mRNA_H-paniculata_contig12424.1521.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12424.1521.1
Unique NamemRNA_H-paniculata_contig12424.1521.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12424.1521.1 vs. uniprot
Match: D7G1V1_ECTSI (HSPC140 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1V1_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 1.120e-28
Identity = 55/71 (77.46%), Postives = 60/71 (84.51%), Query Frame = 1
Query:    1 YDRQIRLWGVEAQQRMSGSRVLFSGMTGVTAEGCKNLLLAGLSATLRDDGLVDVRDIGANFLLEEEDIGKN 213
            YDRQIRLWGVEAQQRMSGSRVLFSG+ GVT EGCKNLLLAG+SATL+D       DIGANFLL  +D+GKN
Sbjct:   31 YDRQIRLWGVEAQQRMSGSRVLFSGINGVTVEGCKNLLLAGVSATLQDQASAQPSDIGANFLLSGQDVGKN 101          
BLAST of mRNA_H-paniculata_contig12424.1521.1 vs. uniprot
Match: A0A836CJW8_9STRA (ThiF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJW8_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 4.710e-21
Identity = 43/71 (60.56%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    1 YDRQIRLWGVEAQQRMSGSRVLFSGMTGVTAEGCKNLLLAGLSATLRDDGLVDVRDIGANFLLEEEDIGKN 213
            YDRQIRLWGV+AQ+RMS S+VL++G TGV AE  KNL+LAG+ AT++D       D+G NF L  ED+GKN
Sbjct:   19 YDRQIRLWGVQAQKRMSSSKVLYAGFTGVCAEAAKNLVLAGIHATIQDHRAATYADLGTNFFLTAEDVGKN 89          
BLAST of mRNA_H-paniculata_contig12424.1521.1 vs. uniprot
Match: A0A7S3UXC5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXC5_HETAK)

HSP 1 Score: 85.1 bits (209), Expect = 7.430e-20
Identity = 39/70 (55.71%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    1 YDRQIRLWGVEAQQRMSGSRVLFSGMTGVTAEGCKNLLLAGLSATLRDDGLVDVRDIGANFLLEEEDIGK 210
            YDRQIRLWG+EAQ+RM  S+V F+G+  ++ E CKNL+LAG+S TL+D   V   D  ++FL  E+DIGK
Sbjct:   10 YDRQIRLWGLEAQKRMRSSKVFFAGINALSLEVCKNLVLAGVSVTLQDSRTVTAEDTASHFLFSEQDIGK 79          
BLAST of mRNA_H-paniculata_contig12424.1521.1 vs. uniprot
Match: A0A7R9YA67_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YA67_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 9.610e-20
Identity = 44/71 (61.97%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    1 YDRQIRLWGVEAQQRMSGSRVLFSGMTGVTAEGCKNLLLAGLSATLRDDGLVDVRDIGANFLLEEEDIGKN 213
            YDRQIRLWGV AQ+RM  +RVLF G+T ++AE  KNL+LAG+S TL+D   V  RD+GANF L  ED+G N
Sbjct:   17 YDRQIRLWGVAAQKRMQQARVLFLGVTALSAEVAKNLVLAGISVTLQDGNAVRGRDLGANFFLAAEDVGAN 87          
BLAST of mRNA_H-paniculata_contig12424.1521.1 vs. uniprot
Match: U9T828_RHIID (ThiF domain-containing protein n=7 Tax=Rhizophagus TaxID=1129544 RepID=U9T828_RHIID)

HSP 1 Score: 87.0 bits (214), Expect = 1.070e-18
Identity = 42/72 (58.33%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    1 YDRQIRLWGVEAQQRMSGSRVLFSGMTGVTAEGCKNLLLAGL-SATLRDDGLVDVRDIGANFLLEEEDIGKN 213
            YDRQIRLWG+EAQQRM  S +L SG+ G++ E CKNL+LAG+ S T+ D  +V   D+GA FL+ E+D+GKN
Sbjct:   16 YDRQIRLWGLEAQQRMRNSSILISGIRGLSNEVCKNLVLAGVGSVTIIDHNIVTEEDLGAQFLITEQDLGKN 87          
BLAST of mRNA_H-paniculata_contig12424.1521.1 vs. uniprot
Match: A0A5A8D1D0_CAFRO (ThiF domain-containing protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8D1D0_CAFRO)

HSP 1 Score: 87.0 bits (214), Expect = 1.250e-18
Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    1 YDRQIRLWGVEAQQRMSGSRVLFSGMTGVTAEGCKNLLLAGLSATLRDDGLVDVRDIGANFLLEEEDIGK 210
            YDR IRLWG EAQ R+  +++L  G++G+TAE CKNL+L+GLS TL DD      D+ ANF L E+DIGK
Sbjct:   15 YDRAIRLWGAEAQARLMAAKLLVVGLSGLTAELCKNLVLSGLSLTLHDDAAATAEDLSANFFLSEDDIGK 84          
BLAST of mRNA_H-paniculata_contig12424.1521.1 vs. uniprot
Match: A0A397T657_9GLOM (SUMO activating enzyme n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397T657_9GLOM)

HSP 1 Score: 86.7 bits (213), Expect = 1.410e-18
Identity = 43/72 (59.72%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    1 YDRQIRLWGVEAQQRMSGSRVLFSGMTGVTAEGCKNLLLAGL-SATLRDDGLVDVRDIGANFLLEEEDIGKN 213
            YDRQIRLWG+EAQQR+  S +L SGM G++ E CKNL+LAG+ S TL D  +V   D+GA FL+ E+D+GKN
Sbjct:   16 YDRQIRLWGLEAQQRIRNSSILISGMRGLSNEVCKNLVLAGVASVTLIDHNVVMEEDLGAQFLITEQDLGKN 87          
BLAST of mRNA_H-paniculata_contig12424.1521.1 vs. uniprot
Match: A0A507CCY1_9FUNG (ThiF domain-containing protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507CCY1_9FUNG)

HSP 1 Score: 86.7 bits (213), Expect = 2.160e-18
Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 1
Query:    1 YDRQIRLWGVEAQQRMSGSRVLFSGMTGVTAEGCKNLLLAGLSA-TLRDDGLVDVRDIGANFLLEEEDIGKN 213
            YDRQIRLWG+EAQ RM  S +L  G+TG+T E CKNL+LAG+ A T+ D   V V D+GA F + E DIGKN
Sbjct:   47 YDRQIRLWGMEAQTRMRNSSILVGGLTGLTNEVCKNLVLAGIGALTVADGAKVSVDDLGAQFFIAESDIGKN 118          
BLAST of mRNA_H-paniculata_contig12424.1521.1 vs. uniprot
Match: A0A507E6S6_9FUNG (ThiF domain-containing protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E6S6_9FUNG)

HSP 1 Score: 86.7 bits (213), Expect = 2.410e-18
Identity = 41/72 (56.94%), Postives = 57/72 (79.17%), Query Frame = 1
Query:    1 YDRQIRLWGVEAQQRMSGSRVLFSGMTGVTAEGCKNLLLAGLSA-TLRDDGLVDVRDIGANFLLEEEDIGKN 213
            YDRQIRLWG+EAQQRM  +++L +G++G++ E CKNL+L+G+ A T+  DG V++ D+GA F L E DIGKN
Sbjct:   56 YDRQIRLWGLEAQQRMRHAKILVAGVSGLSNEICKNLVLSGVGAITIISDGTVEIVDLGAQFFLRETDIGKN 127          
BLAST of mRNA_H-paniculata_contig12424.1521.1 vs. uniprot
Match: A0A1S8VWF9_9FUNG (ThiF domain-containing protein n=2 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VWF9_9FUNG)

HSP 1 Score: 85.9 bits (211), Expect = 4.230e-18
Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    1 YDRQIRLWGVEAQQRMSGSRVLFSGMTGVTAEGCKNLLLAGL-SATLRDDGLVDVRDIGANFLLEEEDIGKN 213
            YDRQIRLWG+EAQQRM  +R+L +G TG+  E  KN++LAG+ S T+ D  LV+ RD+GA F L E DIG N
Sbjct:   61 YDRQIRLWGMEAQQRMRNARILVAGCTGLANEVLKNIVLAGVGSVTIADSQLVEARDLGAQFFLRESDIGNN 132          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12424.1521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1V1_ECTSI1.120e-2877.46HSPC140 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1V1... [more]
A0A836CJW8_9STRA4.710e-2160.56ThiF domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S3UXC5_HETAK7.430e-2055.71Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7R9YA67_9STRA9.610e-2061.97Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
U9T828_RHIID1.070e-1858.33ThiF domain-containing protein n=7 Tax=Rhizophagus... [more]
A0A5A8D1D0_CAFRO1.250e-1857.14ThiF domain-containing protein n=3 Tax=Sar TaxID=2... [more]
A0A397T657_9GLOM1.410e-1859.72SUMO activating enzyme n=1 Tax=Glomus cerebriforme... [more]
A0A507CCY1_9FUNG2.160e-1859.72ThiF domain-containing protein n=1 Tax=Synchytrium... [more]
A0A507E6S6_9FUNG2.410e-1856.94ThiF domain-containing protein n=1 Tax=Powellomyce... [more]
A0A1S8VWF9_9FUNG4.230e-1858.33ThiF domain-containing protein n=2 Tax=Batrachochy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12424contigH-paniculata_contig12424:1461..2046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.8
Seed ortholog evalue1.8e-23
Seed eggNOG ortholog2880.D7G1V1
Preferred nameAOS1
KEGG koko:K03845,ko:K04532,ko:K10684
KEGG ReactionR06258
KEGG Pathwayko00510,ko00513,ko01100,ko04120,ko05010,map00510,map00513,map01100,map04120,map05010
KEGG ModuleM00055
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004839,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008022,GO:0008047,GO:0008150,GO:0008152,GO:0008641,GO:0009987,GO:0016567,GO:0016874,GO:0016877,GO:0016925,GO:0018193,GO:0018205,GO:0019538,GO:0019899,GO:0019948,GO:0030234,GO:0031510,GO:0031974,GO:0031981,GO:0032446,GO:0032991,GO:0036211,GO:0043008,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044388,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046982,GO:0046983,GO:0050790,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0071704,GO:0098772,GO:1901564,GO:1902494
EggNOG free text desc.SUMO activating enzyme activity
EggNOG OGsCOG0476@1,KOG2014@2759
EC2.4.1.258,6.2.1.45
COG Functional cat.H
CAZyGT58
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko04121
Exons2
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928962.3277686-CDS-H-paniculata_contig12424:1460..15981622928962.3277686-CDS-H-paniculata_contig12424:1460..1598Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12424 1461..1598 -
1691480683.4652114-CDS-H-paniculata_contig12424:1460..15981691480683.4652114-CDS-H-paniculata_contig12424:1460..1598Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12424 1461..1598 -
1622928962.3478894-CDS-H-paniculata_contig12424:1962..20461622928962.3478894-CDS-H-paniculata_contig12424:1962..2046Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12424 1963..2046 -
1691480683.475692-CDS-H-paniculata_contig12424:1962..20461691480683.475692-CDS-H-paniculata_contig12424:1962..2046Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12424 1963..2046 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12424.1521.1prot_H-paniculata_contig12424.1521.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12424 1461..2046 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12424.1521.1

>prot_H-paniculata_contig12424.1521.1 ID=prot_H-paniculata_contig12424.1521.1|Name=mRNA_H-paniculata_contig12424.1521.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
YDRQIRLWGVEAQQRMSGSRVLFSGMTGVTAEGCKNLLLAGLSATLRDDG
LVDVRDIGANFLLEEEDIGKNVRD
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mRNA from alignment at H-paniculata_contig12424:1461..2046-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12424.1521.1 ID=mRNA_H-paniculata_contig12424.1521.1|Name=mRNA_H-paniculata_contig12424.1521.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=586bp|location=Sequence derived from alignment at H-paniculata_contig12424:1461..2046- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATGACCGTCAGATCCGCCTGTGGGGGGTGGAGGCTCAGCAGCGGATGAG CGGCTCTCGAGTTTTGTTCTCGGGCATGACCGGGGTGTGTGATGTATTGC TTGTATTTTTTCTTTCTCAGTAGTGCATGTTTATAGAGTTAACTACGGCA ACAGACAGCACGGGAAAAAATAGCCTTGCAAAAAACACCTGTTGGGGTAA TATACCTTGGCATATCAATCGAGTGCAGTGTTGAAATATCTGTTCCAGAC GATGATAGCGACTAGTAGTAGAGCCACGGTTATTTTCGTGAGAGTCATAC TCCAGTGTTTTGTCCTCGACGCACTCATCAACGGCTCGCTCCTCTCGCAT GAAGATTCGTCTTCGAGAAGTTACGTGGATACGGTTTTGGAAATATGGAA AAACCCCACAGTATAAAGCCAGTGAGCCAGGGGTTTTGATCTTGACAGGT GACTGCAGAAGGGTGCAAGAATCTCTTGTTGGCGGGGTTGAGTGCCACAC TTCGGGACGACGGGCTGGTCGATGTGCGCGACATTGGAGCGAACTTCCTC TTGGAAGAAGAAGACATCGGGAAGAACGTGCGAGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig12424:1461..2046-

>mRNA_H-paniculata_contig12424.1521.1 ID=mRNA_H-paniculata_contig12424.1521.1|Name=mRNA_H-paniculata_contig12424.1521.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig12424:1461..2046- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATGACCGTCAGATCCGCCTGTGGGGGGTGGAGGCTCAGCAGCGGATGAG
CGGCTCTCGAGTTTTGTTCTCGGGCATGACCGGGTATGACCGTCAGATCC
GCCTGTGGGGGGTGGAGGCTCAGCAGCGGATGAGCGGCTCTCGAGTTTTG
TTCTCGGGCATGACCGGGGTGACTGCAGAAGGGTGCAAGAATCTCTTGTT
GGCGGGGTTGAGTGCCACACTTCGGGACGACGGGCTGGTCGATGTGCGCG
ACATTGGAGCGAACTTCCTCTTGGAAGAAGAAGACATCGGGAAGAACGTG
CGAGATGTGACTGCAGAAGGGTGCAAGAATCTCTTGTTGGCGGGGTTGAG
TGCCACACTTCGGGACGACGGGCTGGTCGATGTGCGCGACATTGGAGCGA
ACTTCCTCTTGGAAGAAGAAGACATCGGGAAGAACGTGCGAGAT
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