prot_H-paniculata_contig72343.15209.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig72343.15209.1
Unique Name	prot_H-paniculata_contig72343.15209.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	178

Homology

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BLAST of mRNA_H-paniculata_contig72343.15209.1 vs. uniprot
Match: A0A6H5J7U9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7U9_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 1.190e-47
Identity = 87/188 (46.28%), Postives = 122/188 (64.89%), Query Frame = 0

Query:    1 LRKPISTSTNTRAVERLNRVFMDVSGPKSVESTGGMRYSFLIRDDFSRKIWIYFGRHKSDTTRIFEQFLADS----TPSVVGTVRSDGGGEF-TGPFSDICRTRGARQEYTPADSPKYNGVAERAIALVEQAA------------GVDVPDRIWAESYRWAADALNRSATTANPKKKSPDEMFYGEIP 171
            L KPI   T+TRAV++L RVF+D+SG   V+S GG  Y+ +++DD++R   +YF +HKSD    FE++LA++     PS V  VRSD GGEF  G F  +CR    +QE+TPA SP+Y+GVAERA+ L+E AA            G      +WAE+  W+ +ALN ++TT+NP+KKSP EM++G  P
Sbjct:   18 LSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYDGVAERALGLIEDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP 205

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BLAST of mRNA_H-paniculata_contig72343.15209.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 5.680e-45
Identity = 88/197 (44.67%), Postives = 123/197 (62.44%), Query Frame = 0

Query:    1 LRKPISTSTNTRAVERLNRVFMDVSGPKSVESTGGMRYSFLIRDDFSRKIWIYFGRHKSDTTRIFEQFLA----DSTPSVVGTVRSDGGGEFTG-PFSDICRTRGARQEYTPADSPKYNGVAERAIALVEQAA------------GVDVP--DRIWAESYRWAADALNRSATTANPKKKSPDEMFYGEIPTIKLLPF 178
            ++K I+  T +R+ ++L RVF+D+ G K V S GG  Y  +++DDF+R+ W+YF +HKSD    F  FLA    D  PS+V  VRSD GGEF G  F+ +C     +QE+TPA SP+YNGVAER + L+E+AA             V +P  D++WAE+  WA +A+N +A +ANP  KSP EM+YGE    +  PF
Sbjct:  708 VKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRPARPYPF 904

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BLAST of mRNA_H-paniculata_contig72343.15209.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 5.720e-45
Identity = 88/197 (44.67%), Postives = 123/197 (62.44%), Query Frame = 0

Query:    1 LRKPISTSTNTRAVERLNRVFMDVSGPKSVESTGGMRYSFLIRDDFSRKIWIYFGRHKSDTTRIFEQFLA----DSTPSVVGTVRSDGGGEFTG-PFSDICRTRGARQEYTPADSPKYNGVAERAIALVEQAA------------GVDVP--DRIWAESYRWAADALNRSATTANPKKKSPDEMFYGEIPTIKLLPF 178
            ++K I+  T +R+ ++L RVF+D+ G K V S GG  Y  +++DDF+R+ W+YF +HKSD    F  FLA    D  PS+V  VRSD GGEF G  F+ +C     +QE+TPA SP+YNGVAER + L+E+AA             V +P  D++WAE+  WA +A+N +A +ANP  KSP EM+YGE    +  PF
Sbjct:  415 VKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGEPRPARPYPF 611

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BLAST of mRNA_H-paniculata_contig72343.15209.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 5.050e-44
Identity = 87/182 (47.80%), Postives = 115/182 (63.19%), Query Frame = 0

Query:   16 RLNRVFMDVSGPKSVESTGGMRYSFLIRDDFSRKIWIYFGRHKSDTTRIFEQFLA----DSTPSVVGTVRSDGGGEFTG-PFSDICRTRGARQEYTPADSPKYNGVAERAIALVEQAA------------GVDVP--DRIWAESYRWAADALNRSATTANPKKKSPDEMFYGEIPTIKLLPF 178
            R+ RVF+D+ G K+V S GG  Y  +++DDF+R+ WIYF R+KSD    F  FLA    D  PS+V TVRSD GGEF G  F+ +C     +QE+TPA SP+YNGVAER + L+E+AA             V +P  D++WAE+  WA +ALN +A +ANP  KSP EM+YGE    +  PF
Sbjct:  327 RIGRVFVDLGGKKAVVSVGGKYYPMIVKDDFTRRAWIYFLRNKSDAASAFRSFLASVRADGIPSLVETVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPYPF 508

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BLAST of mRNA_H-paniculata_contig72343.15209.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 1.270e-43
Identity = 87/188 (46.28%), Postives = 122/188 (64.89%), Query Frame = 0

Query:    1 LRKPISTSTNTRAVERLNRVFMDVSGPKSVESTGGMRYSFLIRDDFSRKIWIYFGRHKSDTTRIFEQFLADS----TPSVVGTVRSDGGGEF-TGPFSDICRTRGARQEYTPADSPKYNGVAERAIALVEQAA------------GVDVPDRIWAESYRWAADALNRSATTANPKKKSPDEMFYGEIP 171
            L KPI   T+TRAV++L RVF+D+SG   V+S GG  Y+ +++DD++R   +YF +HKSD    FE++LA++     PS V  VRSD GGEF  G F  +CR    +QE+TPA SP+YNGVAERA+ L++ AA            G      +WAE+  W+ +ALN ++TT+NP+KKSP EM++G  P
Sbjct:  717 LSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP 904

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BLAST of mRNA_H-paniculata_contig72343.15209.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 1.280e-43
Identity = 87/188 (46.28%), Postives = 122/188 (64.89%), Query Frame = 0

Query:    1 LRKPISTSTNTRAVERLNRVFMDVSGPKSVESTGGMRYSFLIRDDFSRKIWIYFGRHKSDTTRIFEQFLADS----TPSVVGTVRSDGGGEF-TGPFSDICRTRGARQEYTPADSPKYNGVAERAIALVEQAA------------GVDVPDRIWAESYRWAADALNRSATTANPKKKSPDEMFYGEIP 171
            L KPI   T+TRAV++L RVF+D+SG   V+S GG  Y+ +++DD++R   +YF +HKSD    FE++LA++     PS V  VRSD GGEF  G F  +CR    +QE+TPA SP+YNGVAERA+ L++ AA            G      +WAE+  W+ +ALN ++TT+NP+KKSP EM++G  P
Sbjct:  552 LSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP 739

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BLAST of mRNA_H-paniculata_contig72343.15209.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 1.280e-43
Identity = 87/188 (46.28%), Postives = 122/188 (64.89%), Query Frame = 0

Query:    1 LRKPISTSTNTRAVERLNRVFMDVSGPKSVESTGGMRYSFLIRDDFSRKIWIYFGRHKSDTTRIFEQFLADS----TPSVVGTVRSDGGGEF-TGPFSDICRTRGARQEYTPADSPKYNGVAERAIALVEQAA------------GVDVPDRIWAESYRWAADALNRSATTANPKKKSPDEMFYGEIP 171
            L KPI   T+TRAV++L RVF+D+SG   V+S GG  Y+ +++DD++R   +YF +HKSD    FE++LA++     PS V  VRSD GGEF  G F  +CR    +QE+TPA SP+YNGVAERA+ L++ AA            G      +WAE+  W+ +ALN ++TT+NP+KKSP EM++G  P
Sbjct:  565 LSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP 752

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BLAST of mRNA_H-paniculata_contig72343.15209.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 1.290e-43
Identity = 87/188 (46.28%), Postives = 122/188 (64.89%), Query Frame = 0

Query:    1 LRKPISTSTNTRAVERLNRVFMDVSGPKSVESTGGMRYSFLIRDDFSRKIWIYFGRHKSDTTRIFEQFLADS----TPSVVGTVRSDGGGEF-TGPFSDICRTRGARQEYTPADSPKYNGVAERAIALVEQAA------------GVDVPDRIWAESYRWAADALNRSATTANPKKKSPDEMFYGEIP 171
            L KPI   T+TRAV++L RVF+D+SG   V+S GG  Y+ +++DD++R   +YF +HKSD    FE++LA++     PS V  VRSD GGEF  G F  +CR    +QE+TPA SP+YNGVAERA+ L++ AA            G      +WAE+  W+ +ALN ++TT+NP+KKSP EM++G  P
Sbjct:  708 LSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP 895

[Close]

BLAST of mRNA_H-paniculata_contig72343.15209.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 1.310e-43
Identity = 85/197 (43.15%), Postives = 117/197 (59.39%), Query Frame = 0

Query:    1 LRKPISTSTNTRAVERLNRVFMDVSGPKSVESTGGMRYSFLIRDDFSRKIWIYFGRHKSDTTRIFEQFLA----DSTPSVVGTVRSDGGGEFTG-PFSDICRTRGARQEYTPADSPKYNGVAERAIALVEQAA------------GVDVP--DRIWAESYRWAADALNRSATTANPKKKSPDEMFYGEIPTIKLLPF 178
            +RK I   T  R+ ++L RVF D+ G K + S GG  Y  +++DDF+R  W+YF R+KSD    F  FLA    +  PS V  VRSD GG+F G  F+ +C     +QE+TPA SP+YNGVAER + L+E+AA             V +P  D++WAE+  WA +A+N +A +ANP   SP EM+YGE    +  PF
Sbjct:   76 IRKGIVRETKRRSDKKLGRVFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGEPRPARPYPF 272

[Close]

BLAST of mRNA_H-paniculata_contig72343.15209.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 4.350e-43
Identity = 87/197 (44.16%), Postives = 120/197 (60.91%), Query Frame = 0

Query:    1 LRKPISTSTNTRAVERLNRVFMDVSGPKSVESTGGMRYSFLIRDDFSRKIWIYFGRHKSDTTRIFEQFLA----DSTPSVVGTVRSDGGGEFTG-PFSDICRTRGARQEYTPADSPKYNGVAERAIALVEQAA------------GVDVP--DRIWAESYRWAADALNRSATTANPKKKSPDEMFYGEIPTIKLLPF 178
            +RK I+  T   + ++L RVF+++ G K V S GG  Y  +++DDF+R+ W+YF R KSD    F  FLA    D  PS++  VRSD GGEF G  F+ +C     +QE+TPA SP++NGVAER + L+E+AA             V +P  DR+WAE+  WA +ALN +A +ANP  KSP EM+YGE    +  PF
Sbjct:  435 IRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARPYPF 631

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig72343.15209.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig72343.15209.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5J7U9_9PHAE	1.190e-47	46.28	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JBA7_9PHAE	5.680e-45	44.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KZH7_9PHAE	5.720e-45	44.67	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JB16_9PHAE	5.050e-44	47.80	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JTI6_9PHAE	1.270e-43	46.28	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JZQ8_9PHAE	1.280e-43	46.28	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JN00_9PHAE	1.280e-43	46.28	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KF60_9PHAE	1.290e-43	46.28	Uncharacterized protein n=12 Tax=Ectocarpus sp. CC...	[more]
A0A6H5KVR5_9PHAE	1.310e-43	43.15	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JH25_9PHAE	4.350e-43	44.16	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 18..126 e-value: 2.0E-12 score: 47.3
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..178 score: 12.869
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 7..177 e-value: 6.1E-19 score: 70.0
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 16..152
None	No IPR available	PANTHER	PTHR11439:SF284		coord: 16..152
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 18..175

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig72343	contig	H-paniculata_contig72343:2..568 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig72343.15209.1	mRNA_H-paniculata_contig72343.15209.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig72343 2..568 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig72343.15209.1 ID=prot_H-paniculata_contig72343.15209.1|Name=mRNA_H-paniculata_contig72343.15209.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=178bp
LRKPISTSTNTRAVERLNRVFMDVSGPKSVESTGGMRYSFLIRDDFSRKI
WIYFGRHKSDTTRIFEQFLADSTPSVVGTVRSDGGGEFTGPFSDICRTRG
ARQEYTPADSPKYNGVAERAIALVEQAAGVDVPDRIWAESYRWAADALNR
SATTANPKKKSPDEMFYGEIPTIKLLPF

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001584	Integrase_cat-core
IPR036397	RNaseH_sf
IPR039537	Retrotran_Ty1/copia-like
IPR012337	RNaseH-like_sf