prot_H-paniculata_contig12404.1516.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig12404.1516.1
Unique Nameprot_H-paniculata_contig12404.1516.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length66
Homology
BLAST of mRNA_H-paniculata_contig12404.1516.1 vs. uniprot
Match: D8LG80_ECTSI (40S ribosomal protein S30 n=2 Tax=PX clade TaxID=569578 RepID=D8LG80_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 2.830e-37
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0
Query:    1 MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 65
            MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV
Sbjct:    1 MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 65          
BLAST of mRNA_H-paniculata_contig12404.1516.1 vs. uniprot
Match: K0R2S3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R2S3_THAOC)

HSP 1 Score: 112 bits (280), Expect = 1.340e-30
Identity = 55/65 (84.62%), Postives = 62/65 (95.38%), Query Frame = 0
Query:    1 MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 65
            MGKVHGSLARAGKVKGQTPK++  EKKKQPRGRAKKRMQYNRR+VNVVTG+GGK++GPNSNA K+
Sbjct:   58 MGKVHGSLARAGKVKGQTPKVEAQEKKKQPRGRAKKRMQYNRRYVNVVTGMGGKKVGPNSNADKM 122          
BLAST of mRNA_H-paniculata_contig12404.1516.1 vs. uniprot
Match: A0A7S2V4V4_9STRA (Hypothetical protein n=3 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S2V4V4_9STRA)

HSP 1 Score: 108 bits (270), Expect = 7.210e-29
Identity = 55/64 (85.94%), Postives = 60/64 (93.75%), Query Frame = 0
Query:    2 GKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 65
            GKVHGSLARAGKVKGQTPK++  EKKK+  GRAKKRMQYNRRFVNVVTGVGGK+LGPNSNA+KV
Sbjct:   77 GKVHGSLARAGKVKGQTPKVEAQEKKKKLTGRAKKRMQYNRRFVNVVTGVGGKKLGPNSNASKV 140          
BLAST of mRNA_H-paniculata_contig12404.1516.1 vs. uniprot
Match: A0A1E7F7Q1_9STRA (40S ribosomal protein S30 n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A1E7F7Q1_9STRA)

HSP 1 Score: 106 bits (264), Expect = 7.430e-29
Identity = 54/66 (81.82%), Postives = 62/66 (93.94%), Query Frame = 0
Query:    1 MGKVHGSLARAGKVKGQTPKIDKIEK-KKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 65
            MGKVHGSLARAGKVK QTPK++K E+ KKQPRGRAKKR+QYNRR+VNVVTG+GGKR+GPNSNA K+
Sbjct:    1 MGKVHGSLARAGKVKNQTPKVEKQEEGKKQPRGRAKKRLQYNRRYVNVVTGMGGKRVGPNSNADKM 66          
BLAST of mRNA_H-paniculata_contig12404.1516.1 vs. uniprot
Match: A0A4D9D2L7_9STRA (Ubiquitin-like domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2L7_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.770e-27
Identity = 52/64 (81.25%), Postives = 59/64 (92.19%), Query Frame = 0
Query:    2 GKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 65
            GKVHGSLARAGKVKGQTPK++K EK+K PRGRAKKR+ Y+RRF+NV TGVGGKRLGPNSNA K+
Sbjct:   77 GKVHGSLARAGKVKGQTPKVEKQEKRKTPRGRAKKRVLYSRRFLNVATGVGGKRLGPNSNADKM 140          
BLAST of mRNA_H-paniculata_contig12404.1516.1 vs. uniprot
Match: A0A8J2X0V5_9STRA (Hypothetical protein n=3 Tax=Pelagomonadales TaxID=54409 RepID=A0A8J2X0V5_9STRA)

HSP 1 Score: 104 bits (260), Expect = 8.320e-27
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0
Query:    2 GKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNA 62
            GKVHGSLARAGKVKGQTPK++K EKKK P GRAKKRM YNRRFVNVV GVGGKR GPNSNA
Sbjct:   91 GKVHGSLARAGKVKGQTPKVEKQEKKKLPTGRAKKRMLYNRRFVNVVAGVGGKRFGPNSNA 151          
BLAST of mRNA_H-paniculata_contig12404.1516.1 vs. uniprot
Match: A0A2P6VFJ9_9CHLO (40S ribosomal protein S30 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VFJ9_9CHLO)

HSP 1 Score: 98.6 bits (244), Expect = 7.150e-26
Identity = 48/60 (80.00%), Postives = 54/60 (90.00%), Query Frame = 0
Query:    1 MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNS 60
            MGKVHGSLARAGKV+GQTPK+ K EKKK P+GRA+KR+QYNRRFVNVV G GGK+ GPNS
Sbjct:    1 MGKVHGSLARAGKVRGQTPKVPKQEKKKTPKGRARKRLQYNRRFVNVVVGFGGKKKGPNS 60          
BLAST of mRNA_H-paniculata_contig12404.1516.1 vs. uniprot
Match: A0A7S3LSY6_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LSY6_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 4.040e-25
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 0
Query:    2 GKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 65
            GKVHGSLARAGKVKGQTPK+ K +KK+ P GRAKKRMQYNRRFVNVV G  GKR+GPN+NAA++
Sbjct:   77 GKVHGSLARAGKVKGQTPKVAKQDKKRVPTGRAKKRMQYNRRFVNVVNGGMGKRVGPNNNAARL 140          
BLAST of mRNA_H-paniculata_contig12404.1516.1 vs. uniprot
Match: A0A484DSZ2_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DSZ2_BRELC)

HSP 1 Score: 97.1 bits (240), Expect = 5.580e-25
Identity = 53/65 (81.54%), Postives = 55/65 (84.62%), Query Frame = 0
Query:    2 GKVHGSLARAGKVKGQTPKIDKIE-KKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 65
            GKVHGSLARAGKVKGQTPK+ K E  KK   GRAKKR QYNRRFVNVV G GGK+LGPNSNAAKV
Sbjct:   21 GKVHGSLARAGKVKGQTPKVPKQEDSKKALTGRAKKRWQYNRRFVNVVAGSGGKKLGPNSNAAKV 85          
BLAST of mRNA_H-paniculata_contig12404.1516.1 vs. uniprot
Match: A8JF66_CHLRE (40S ribosomal protein S30 n=7 Tax=cellular organisms TaxID=131567 RepID=A8JF66_CHLRE)

HSP 1 Score: 96.3 bits (238), Expect = 6.040e-25
Identity = 51/63 (80.95%), Postives = 55/63 (87.30%), Query Frame = 0
Query:    1 MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAA 63
            MGKVHGSLARAGKV+GQTPK+ K EKKK+PRGRA KRM+YNRRFVNVV G G KR GPNSN A
Sbjct:    1 MGKVHGSLARAGKVRGQTPKVPKQEKKKRPRGRAMKRMKYNRRFVNVVVGFGKKR-GPNSNPA 62          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12404.1516.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG80_ECTSI2.830e-37100.0040S ribosomal protein S30 n=2 Tax=PX clade TaxID=5... [more]
K0R2S3_THAOC1.340e-3084.62Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2V4V4_9STRA7.210e-2985.94Hypothetical protein n=3 Tax=Ochrophyta TaxID=2696... [more]
A0A1E7F7Q1_9STRA7.430e-2981.8240S ribosomal protein S30 n=4 Tax=Bacillariophyta ... [more]
A0A4D9D2L7_9STRA1.770e-2781.25Ubiquitin-like domain-containing protein n=2 Tax=M... [more]
A0A8J2X0V5_9STRA8.320e-2786.89Hypothetical protein n=3 Tax=Pelagomonadales TaxID... [more]
A0A2P6VFJ9_9CHLO7.150e-2680.0040S ribosomal protein S30 n=1 Tax=Micractinium con... [more]
A0A7S3LSY6_9STRA4.040e-2578.13Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A484DSZ2_BRELC5.580e-2581.54Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A8JF66_CHLRE6.040e-2580.9540S ribosomal protein S30 n=7 Tax=cellular organis... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006846Ribosomal protein S30PFAMPF04758Ribosomal_S30coord: 3..61
e-value: 2.0E-29
score: 101.5
NoneNo IPR availablePANTHERPTHR1265040S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBIcoord: 1..63
NoneNo IPR availablePANTHERPTHR12650:SF1540S RIBOSOMAL PROTEIN S30coord: 1..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12404contigH-paniculata_contig12404:3230..5784 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12404.1516.1mRNA_H-paniculata_contig12404.1516.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig12404 3230..5784 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig12404.1516.1 ID=prot_H-paniculata_contig12404.1516.1|Name=mRNA_H-paniculata_contig12404.1516.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRAKKRMQYNRRFVNVVTG
VGGKRLGPNSNAAKV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006846Ribosomal_S30