mRNA_H-paniculata_contig12404.1516.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12404.1516.1
Unique NamemRNA_H-paniculata_contig12404.1516.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12404.1516.1 vs. uniprot
Match: D8LG80_ECTSI (40S ribosomal protein S30 n=2 Tax=PX clade TaxID=569578 RepID=D8LG80_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 2.830e-37
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 195
            MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV
Sbjct:    1 MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 65
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BLAST of mRNA_H-paniculata_contig12404.1516.1 vs. uniprot
Match: K0R2S3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R2S3_THAOC)

HSP 1 Score: 112 bits (280), Expect = 1.340e-30
Identity = 55/65 (84.62%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    1 MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 195
            MGKVHGSLARAGKVKGQTPK++  EKKKQPRGRAKKRMQYNRR+VNVVTG+GGK++GPNSNA K+
Sbjct:   58 MGKVHGSLARAGKVKGQTPKVEAQEKKKQPRGRAKKRMQYNRRYVNVVTGMGGKKVGPNSNADKM 122
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BLAST of mRNA_H-paniculata_contig12404.1516.1 vs. uniprot
Match: A0A7S2V4V4_9STRA (Hypothetical protein n=3 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S2V4V4_9STRA)

HSP 1 Score: 108 bits (270), Expect = 7.210e-29
Identity = 55/64 (85.94%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:    4 GKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 195
            GKVHGSLARAGKVKGQTPK++  EKKK+  GRAKKRMQYNRRFVNVVTGVGGK+LGPNSNA+KV
Sbjct:   77 GKVHGSLARAGKVKGQTPKVEAQEKKKKLTGRAKKRMQYNRRFVNVVTGVGGKKLGPNSNASKV 140
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BLAST of mRNA_H-paniculata_contig12404.1516.1 vs. uniprot
Match: A0A1E7F7Q1_9STRA (40S ribosomal protein S30 n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A1E7F7Q1_9STRA)

HSP 1 Score: 106 bits (264), Expect = 7.430e-29
Identity = 54/66 (81.82%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:    1 MGKVHGSLARAGKVKGQTPKIDKIEK-KKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 195
            MGKVHGSLARAGKVK QTPK++K E+ KKQPRGRAKKR+QYNRR+VNVVTG+GGKR+GPNSNA K+
Sbjct:    1 MGKVHGSLARAGKVKNQTPKVEKQEEGKKQPRGRAKKRLQYNRRYVNVVTGMGGKRVGPNSNADKM 66
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BLAST of mRNA_H-paniculata_contig12404.1516.1 vs. uniprot
Match: A0A4D9D2L7_9STRA (Ubiquitin-like domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2L7_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.770e-27
Identity = 52/64 (81.25%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:    4 GKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 195
            GKVHGSLARAGKVKGQTPK++K EK+K PRGRAKKR+ Y+RRF+NV TGVGGKRLGPNSNA K+
Sbjct:   77 GKVHGSLARAGKVKGQTPKVEKQEKRKTPRGRAKKRVLYSRRFLNVATGVGGKRLGPNSNADKM 140
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BLAST of mRNA_H-paniculata_contig12404.1516.1 vs. uniprot
Match: A0A8J2X0V5_9STRA (Hypothetical protein n=3 Tax=Pelagomonadales TaxID=54409 RepID=A0A8J2X0V5_9STRA)

HSP 1 Score: 104 bits (260), Expect = 8.320e-27
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    4 GKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNA 186
            GKVHGSLARAGKVKGQTPK++K EKKK P GRAKKRM YNRRFVNVV GVGGKR GPNSNA
Sbjct:   91 GKVHGSLARAGKVKGQTPKVEKQEKKKLPTGRAKKRMLYNRRFVNVVAGVGGKRFGPNSNA 151
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BLAST of mRNA_H-paniculata_contig12404.1516.1 vs. uniprot
Match: A0A2P6VFJ9_9CHLO (40S ribosomal protein S30 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VFJ9_9CHLO)

HSP 1 Score: 98.6 bits (244), Expect = 7.150e-26
Identity = 48/60 (80.00%), Postives = 54/60 (90.00%), Query Frame = 1 
Query:    1 MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNS 180
            MGKVHGSLARAGKV+GQTPK+ K EKKK P+GRA+KR+QYNRRFVNVV G GGK+ GPNS
Sbjct:    1 MGKVHGSLARAGKVRGQTPKVPKQEKKKTPKGRARKRLQYNRRFVNVVVGFGGKKKGPNS 60
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BLAST of mRNA_H-paniculata_contig12404.1516.1 vs. uniprot
Match: A0A7S3LSY6_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LSY6_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 4.040e-25
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:    4 GKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 195
            GKVHGSLARAGKVKGQTPK+ K +KK+ P GRAKKRMQYNRRFVNVV G  GKR+GPN+NAA++
Sbjct:   77 GKVHGSLARAGKVKGQTPKVAKQDKKRVPTGRAKKRMQYNRRFVNVVNGGMGKRVGPNNNAARL 140
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BLAST of mRNA_H-paniculata_contig12404.1516.1 vs. uniprot
Match: A0A484DSZ2_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DSZ2_BRELC)

HSP 1 Score: 97.1 bits (240), Expect = 5.580e-25
Identity = 53/65 (81.54%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    4 GKVHGSLARAGKVKGQTPKIDKIE-KKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 195
            GKVHGSLARAGKVKGQTPK+ K E  KK   GRAKKR QYNRRFVNVV G GGK+LGPNSNAAKV
Sbjct:   21 GKVHGSLARAGKVKGQTPKVPKQEDSKKALTGRAKKRWQYNRRFVNVVAGSGGKKLGPNSNAAKV 85
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BLAST of mRNA_H-paniculata_contig12404.1516.1 vs. uniprot
Match: A8JF66_CHLRE (40S ribosomal protein S30 n=7 Tax=cellular organisms TaxID=131567 RepID=A8JF66_CHLRE)

HSP 1 Score: 96.3 bits (238), Expect = 6.040e-25
Identity = 51/63 (80.95%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAA 189
            MGKVHGSLARAGKV+GQTPK+ K EKKK+PRGRA KRM+YNRRFVNVV G G KR GPNSN A
Sbjct:    1 MGKVHGSLARAGKVRGQTPKVPKQEKKKRPRGRAMKRMKYNRRFVNVVVGFGKKR-GPNSNPA 62
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12404.1516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG80_ECTSI2.830e-37100.0040S ribosomal protein S30 n=2 Tax=PX clade TaxID=5... [more]
K0R2S3_THAOC1.340e-3084.62Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2V4V4_9STRA7.210e-2985.94Hypothetical protein n=3 Tax=Ochrophyta TaxID=2696... [more]
A0A1E7F7Q1_9STRA7.430e-2981.8240S ribosomal protein S30 n=4 Tax=Bacillariophyta ... [more]
A0A4D9D2L7_9STRA1.770e-2781.25Ubiquitin-like domain-containing protein n=2 Tax=M... [more]
A0A8J2X0V5_9STRA8.320e-2786.89Hypothetical protein n=3 Tax=Pelagomonadales TaxID... [more]
A0A2P6VFJ9_9CHLO7.150e-2680.0040S ribosomal protein S30 n=1 Tax=Micractinium con... [more]
A0A7S3LSY6_9STRA4.040e-2578.13Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A484DSZ2_BRELC5.580e-2581.54Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A8JF66_CHLRE6.040e-2580.9540S ribosomal protein S30 n=7 Tax=cellular organis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12404contigH-paniculata_contig12404:3230..5784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue3.6e-28
Seed eggNOG ortholog2880.D8LG80
Preferred nameRPS30
KEGG koko:K02983
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsKOG0009@1,KOG0009@2759
Ec32 ortholog descriptionRibosomal protein S30
Ec32 orthologEc-17_004070.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121
Exons2
Model size198
Cds size198
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928960.9624207-CDS-H-paniculata_contig12404:3229..33271622928960.9624207-CDS-H-paniculata_contig12404:3229..3327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12404 3230..3327 +
1691480682.9580486-CDS-H-paniculata_contig12404:3229..33271691480682.9580486-CDS-H-paniculata_contig12404:3229..3327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12404 3230..3327 +
1622928960.975932-CDS-H-paniculata_contig12404:5684..57841622928960.975932-CDS-H-paniculata_contig12404:5684..5784Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12404 5685..5784 +
1691480682.9709842-CDS-H-paniculata_contig12404:5684..57841691480682.9709842-CDS-H-paniculata_contig12404:5684..5784Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12404 5685..5784 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12404.1516.1prot_H-paniculata_contig12404.1516.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12404 3230..5784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12404.1516.1

>prot_H-paniculata_contig12404.1516.1 ID=prot_H-paniculata_contig12404.1516.1|Name=mRNA_H-paniculata_contig12404.1516.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRAKKRMQYNRRFVNVVTG
VGGKRLGPNSNAAKV*
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mRNA from alignment at H-paniculata_contig12404:3230..5784+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12404.1516.1 ID=mRNA_H-paniculata_contig12404.1516.1|Name=mRNA_H-paniculata_contig12404.1516.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2555bp|location=Sequence derived from alignment at H-paniculata_contig12404:3230..5784+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGAAGGTTCACGGCTCGCTGGCTCGTGCTGGTAAGGTGAAGGGACA
AACGCCCAAGATCGACAAGATCGAGAAGAAGAAGCAGCCTCGTGGAAGGT
GTGTTGTTATTTCGTCTTGGATGTGATATTGTGAACTCGAGGCTTTTTGG
GGTTCGATATAGTATGGGGATGGAAGAGCAACTTTCGTGATATTAACCAG
AGCCCAACCAGGAGTGAAGTTTTTCTTGGCCTCCGTTACTCTAGAGTTTG
ATGCCAACTGACTCGTGGCATCTCCTGCTAGCTAGTTTTTTATTGGTCTA
GCAGCCGATGCTGGCTGATTTGTCTCATAAGCATTTGTGTCGTGCGCTCT
TACGCAGACCTTTTGCCCCTTAATTACTCATCACATGAACACACAGCATC
ATACCCTCCACTAATTCTGTGGAAACGTTTGTTTGGCGCAGCAGCACGTG
GTCTGTTCCCTTGCTGCAAACATTCGAAAAATATCGCAGTGTTGAACACA
CAGTTGCGATAATGTTTGCGAGTGCCACTAGCTACCCGAAACTATCAACC
CACCTTTCCCTGTTTTGGTCCTGATTTGTTTGTAGATGATCTTGATGGCA
CATATCACTGCATGTGAACGCAGAACAACTTACCACACTTACAGGAGTAG
CGATGTTGAACGATTGAAGCCCTACATTTCGCAGCTCCAAATACCCAGGT
CCCGATCAAGGCGTTAAGTTGATGTGTATTTTCCGTCAGCCTGCTAGATG
AGTTCTTCAGATAAGACAACAGTTTCTGTAGCCGACAGTTTCCATTTTGT
GTAGTGAATGCCGTCATACTCAGCTCAACGGAGACCGATTCCTCTAATCC
TGTCAAAATGGAAATAGGGAGGCTTTTCCGTGAAACAAGTCCCCTGCTGA
GGTAACATGATGTTTGCGGTATACCCAACGCGACTTGTTGCGTGTGAGGA
GCAATTTGTCAACGGTAAAGAACTTGCAATATGTCGACTTACTCCCAGAT
GATGATTTGGAGTGTGGGGTAGATGGATGCATCGTGAGGTACGCCTGGGA
GGGTGTAGGGCGGTTTGTTTCGAACACGGGACAAGTTGGGGAGCCGGAAT
GTGTAACACGTGTTGTATCTGTGTCAAGTACTCAGCGAAAAGGGTATCGA
GATCATCCCCGTCATGGACAAAGTCAACGACAAACAGCAAGCAACCGTGA
TTGGATGCAAAATTTGGCTTTGTTGAGCGCACTACGGTGCTCTTACAGGG
CAGCTTTGACTGTCGCGCGGTAACTGCCTCCCTATATTGAGGTCTGAAAC
GTCGAACTTGAAACGGGTGTCCCAACGACCTAAAGCAAGATTCCCAGGAT
TAGCACTGAAACCCCCTAATATATCGAACGAAAATGCCATGAAATTGTGC
ACACGGAATTTGTCATGACAGAAGTACTTCATTTTCCTCAAAAAGGCACC
AACGATGATGCATCTTGTTTGATGGAATTGTATATGCACCAATGACGGTT
ACATAATGGCTGAAGTTCGGCGAGACTACTAAACAGTTTGTATAAACTAC
TGTTTTTATAAAAGTTATCACTGTCAGTCTGTAGCAAAAACGTCACACAA
TAGAAACGCGGAGCTATGAATAGCGATTAATACGGCCCGCCACGGTTTCA
AGGACGTTCACTCCGTTCATGAGTCAGTTGGGATTGGAGCAGTTGCACAT
ATCTCAAGTGGCATGCCGTCTGTCCACGCTGTTTTTTCTCATATACCACT
ATTGAGCATTGTGATGCGATTTTACTCTGAGAAGTAATCCACAGTCAATG
AGGTGATCGCACAAGTCGTAAGTCTAGATATGCCGGGACTACGAGGACTA
AGAAGTGAAGTATGGGAGTGGTACCCTTGCTGAAGGGAATATATGACATC
ATAGATTGAGATTTTTCAAATTGGCTATTGTCCATTCCGCCCTAGAATGG
ACTTTTGAGTGCTTCGCCTTATGAAGTACTCAATGAGTTTTGAGCGACAA
GTGCCGTTTTGTATCGAGTTAGAACTTGATGTTTTTACCCAGTATTGCGT
TCCCTAATCTTTACGGAGGACGGCTGAACGAAGGAGTGGGGTCCCTACTG
ACTATCCCGAGATGTTGTTGCCTTCATTTCCAAATCTGATGTACTCATGT
ACCGCTGTTGAGGATATAGACGCCCTTAACGTATTCCCACTGGAGCAATC
CGGAATCGGCCCATCTCTGACCCACGATGGTGATTGTCTGGAACCCTACT
CCTTGTCGGGAGCCGCAGCAAGTCTGTTTTTTTTTCTGGAGATACCCTTA
ACCTGTTTGTCGAAGTCGTGATGAATTATGATCCGTTTTTGTCTAGTAGT
GGCATTTTCACAAAATGTAGTCTAGTTGTATCTTCATGTCAATACTGTAG
GTTGTTATTGACTCATTCAATCGCTGTCCCTCCGTGCTCGCCGTTCTTTT
CCCAGGGCGAAGAAGCGCATGCAGTACAACCGACGCTTCGTGAACGTCGT
CACTGGGGTGGGGGGCAAGAGGCTGGGTCCCAACTCCAACGCCGCTAAGG
TCTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig12404:3230..5784+

>mRNA_H-paniculata_contig12404.1516.1 ID=mRNA_H-paniculata_contig12404.1516.1|Name=mRNA_H-paniculata_contig12404.1516.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig12404:3230..5784+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGAAGGTTCACGGCTCGCTGGCTCGTGCTGGTAAGGTGAAGGGACA
AACGCCCAAGATCGACAAGATCGAGAAGAAGAAGCAGCCTCGTGGAAGAT
GGGGAAGGTTCACGGCTCGCTGGCTCGTGCTGGTAAGGTGAAGGGACAAA
CGCCCAAGATCGACAAGATCGAGAAGAAGAAGCAGCCTCGTGGAAGGGCG
AAGAAGCGCATGCAGTACAACCGACGCTTCGTGAACGTCGTCACTGGGGT
GGGGGGCAAGAGGCTGGGTCCCAACTCCAACGCCGCTAAGGTCTAAGGCG
AAGAAGCGCATGCAGTACAACCGACGCTTCGTGAACGTCGTCACTGGGGT
GGGGGGCAAGAGGCTGGGTCCCAACTCCAACGCCGCTAAGGTCTAA
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