mRNA_H-paniculata_contig12404.1515.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12404.1515.1
Unique NamemRNA_H-paniculata_contig12404.1515.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12404.1515.1 vs. uniprot
Match: A0A7S4D9T4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9T4_HETAK)

HSP 1 Score: 58.9 bits (141), Expect = 4.560e-8
Identity = 36/102 (35.29%), Postives = 55/102 (53.92%), Query Frame = 1 
Query:    1 TQACISSAGKIGRAEGVPAELISWTCADATRPDLFEEL--GLDNVSVVFLYAYPTLLAQLQGLLERLKATGARVVTIQYHLVGTGWEPCKESDQPVSMRLYA 300
            T+ CI  A  I + EGV ++ + + C DAT  D    L   L  ++V++LY YPTLL +L+G++    A   RV+T  YHL    +   K  D+   + LY+
Sbjct:  172 TKECIELAKSIAKIEGVESQ-VQFLCVDATTNDFQNALEENLGEITVLYLYVYPTLLKRLEGVVSYFLARNVRVITQTYHLDCCSFSQSKV-DESSKLVLYS 271
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12404.1515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4D9T4_HETAK4.560e-835.29Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12404contigH-paniculata_contig12404:217..762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-17_004060.1
Exons2
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928960.880737-CDS-H-paniculata_contig12404:216..3931622928960.880737-CDS-H-paniculata_contig12404:216..393Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12404 217..393 +
1691480682.939754-CDS-H-paniculata_contig12404:216..3931691480682.939754-CDS-H-paniculata_contig12404:216..393Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12404 217..393 +
1622928960.8956685-CDS-H-paniculata_contig12404:627..7621622928960.8956685-CDS-H-paniculata_contig12404:627..762Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12404 628..762 +
1691480682.9481993-CDS-H-paniculata_contig12404:627..7621691480682.9481993-CDS-H-paniculata_contig12404:627..762Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12404 628..762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12404.1515.1prot_H-paniculata_contig12404.1515.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12404 217..762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12404.1515.1

>prot_H-paniculata_contig12404.1515.1 ID=prot_H-paniculata_contig12404.1515.1|Name=mRNA_H-paniculata_contig12404.1515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
TQACISSAGKIGRAEGVPAELISWTCADATRPDLFEELGLDNVSVVFLYA
YPTLLAQLQGLLERLKATGARVVTIQYHLVGTGWEPCKESDQPVSMRLYA
PMG*
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mRNA from alignment at H-paniculata_contig12404:217..762+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12404.1515.1 ID=mRNA_H-paniculata_contig12404.1515.1|Name=mRNA_H-paniculata_contig12404.1515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=546bp|location=Sequence derived from alignment at H-paniculata_contig12404:217..762+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCCAGGCGTGTATTAGCTCGGCGGGAAAAATTGGGCGAGCAGAAGGGGT
ACCAGCCGAGTTGATTTCGTGGACTTGTGCAGACGCAACTCGACCTGATC
TTTTCGAGGAGCTGGGACTGGACAACGTGTCGGTGGTATTTTTATATGCT
TACCCTACCCTTTTGGCGCAGCTTCAGGTGAATCCTGAACAGTCGTGCAA
AGGGGTCAATCATTTGCAGTGACACTTGACTGCTGAAATCGATTTGGATG
GCACCCTTTATCGGCACGTGGGTATGGGGGCTTGACTGAAAGAAGAACGT
CATCGCTGATTCGTTATTGCTGCAACTAGTCGTGTTTGATGCTTCGCTTA
TTGGTTGACTACTGCTGCTCGCCCATAAATATGTTGTTCGTGCTCGATAT
GTGTGTTTCAGGGTTTGTTGGAGAGGCTAAAAGCGACTGGAGCACGGGTG
GTCACGATCCAGTACCATTTGGTGGGGACAGGGTGGGAGCCATGCAAGGA
ATCGGACCAGCCGGTCAGCATGCGACTGTATGCGCCAATGGGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig12404:217..762+

>mRNA_H-paniculata_contig12404.1515.1 ID=mRNA_H-paniculata_contig12404.1515.1|Name=mRNA_H-paniculata_contig12404.1515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig12404:217..762+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCCAGGCGTGTATTAGCTCGGCGGGAAAAATTGGGCGAGCAGAAGGGGT
ACCAGCCGAGTTGATTTCGTGGACTTGTGCAGACGCAACTCGACCTGATC
TTTTCGAGGAGCTGGGACTGGACAACGTGTCGGTGGTATTTTTATATGCT
TACCCTACCCTTTTGGCGCAGCTTCAGACCCAGGCGTGTATTAGCTCGGC
GGGAAAAATTGGGCGAGCAGAAGGGGTACCAGCCGAGTTGATTTCGTGGA
CTTGTGCAGACGCAACTCGACCTGATCTTTTCGAGGAGCTGGGACTGGAC
AACGTGTCGGTGGTATTTTTATATGCTTACCCTACCCTTTTGGCGCAGCT
TCAGGGTTTGTTGGAGAGGCTAAAAGCGACTGGAGCACGGGTGGTCACGA
TCCAGTACCATTTGGTGGGGACAGGGTGGGAGCCATGCAAGGAATCGGAC
CAGCCGGTCAGCATGCGACTGTATGCGCCAATGGGGTAAGGTTTGTTGGA
GAGGCTAAAAGCGACTGGAGCACGGGTGGTCACGATCCAGTACCATTTGG
TGGGGACAGGGTGGGAGCCATGCAAGGAATCGGACCAGCCGGTCAGCATG
CGACTGTATGCGCCAATGGGGTAA
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