mRNA_H-paniculata_contig12400.1514.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12400.1514.1
Unique NamemRNA_H-paniculata_contig12400.1514.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12400.1514.1 vs. uniprot
Match: D8LQU4_ECTSI (rRNA adenine N(6)-methyltransferase (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQU4_ECTSI)

HSP 1 Score: 304 bits (779), Expect = 2.780e-100
Identity = 154/174 (88.51%), Postives = 165/174 (94.83%), Query Frame = 1 
Query:    1 QLLGKSLPTLTVVESDVLQVDYTKLAELRGGPLSVIGNLPYHITSQILFTLCDHYLSVRRAVVTMQLEVAQRIVAKPSSKQYGILSVVFQLYARPQILFHIPPTVFYPQPSVTSALISLDFTGKGPGVNQAALKSVLSAAFQQRRKMLRQSLKPLLRAGQTLPDEFATKRPEQV 522
            +LLG ++P+L  V SDVLQ+DYTKLAELRGGPLSVIGNLPYHITSQILFTLCDHY SVRRAVVTMQLEVAQRIVAK S+KQYGILSVVFQLYARPQ+LF IPPTVFYPQPSVTSALISLDFTGKGPGVNQA LKSVLS+AFQQRRKMLRQSLKPLLRAGQ LP+EFAT+RPEQ+
Sbjct:  200 ELLGSNMPSLNAVMSDVLQLDYTKLAELRGGPLSVIGNLPYHITSQILFTLCDHYQSVRRAVVTMQLEVAQRIVAKSSTKQYGILSVVFQLYARPQVLFQIPPTVFYPQPSVTSALISLDFTGKGPGVNQACLKSVLSSAFQQRRKMLRQSLKPLLRAGQKLPEEFATRRPEQL 373
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BLAST of mRNA_H-paniculata_contig12400.1514.1 vs. uniprot
Match: A0A835Z0Q3_9STRA (rRNA adenine N(6)-methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0Q3_9STRA)

HSP 1 Score: 256 bits (655), Expect = 4.110e-83
Identity = 128/174 (73.56%), Postives = 149/174 (85.63%), Query Frame = 1 
Query:    1 QLLGKSLPTLTVVESDVLQVDYTKLAELRGGPLSVIGNLPYHITSQILFTLCDHYLSVRRAVVTMQLEVAQRIVAKPSSKQYGILSVVFQLYARPQILFHIPPTVFYPQPSVTSALISLDFTGKGPGVNQAALKSVLSAAFQQRRKMLRQSLKPLLRAGQTLPDEFATKRPEQV 522
            Q L ++LP LTV++SDVLQ+DYT+LAE RGG LS+IGNLPYHITSQILF LCDHY S+ RAVV +QLEVAQRIVA P+ K+YGILSVVFQLY RP+ILF IP TVFYPQP VTSAL+SLDFTG+GP V++  LK VLS AFQQRRKMLRQSL+PLL  G TLP++F+  RPEQ+
Sbjct:  109 QFLAETLPGLTVLQSDVLQIDYTQLAEARGGQLSIIGNLPYHITSQILFMLCDHYRSIARAVVLLQLEVAQRIVAPPNCKEYGILSVVFQLYTRPRILFKIPATVFYPQPKVTSALLSLDFTGRGPDVDRGDLKKVLSTAFQQRRKMLRQSLRPLLTEGVTLPEKFSALRPEQL 282
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BLAST of mRNA_H-paniculata_contig12400.1514.1 vs. uniprot
Match: W7U2X3_9STRA (rRNA adenine N(6)-methyltransferase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2X3_9STRA)

HSP 1 Score: 224 bits (571), Expect = 1.050e-68
Identity = 123/179 (68.72%), Postives = 144/179 (80.45%), Query Frame = 1 
Query:    4 LLGKSLPTLTVVESDVLQVDYTKLAELRGGPLSVIGNLPYHITSQILFTLCDHYLSVRRAVVTMQLEVAQRIVAKPSSKQYGILSVVFQLYARPQILFHIPPTVFYPQPSVTSALISLDFTGKGPG-----VNQAALKSVLSAAFQQRRKMLRQSLKPLLRA-GQTLPDEFATKRPEQV 522
            LL ++LP+L VV+SDVLQVD+T LAELRGGPLSVIGNLPYHITSQILF L D++ +VR+AVVTMQLEVAQRIVA    K YGILSV+FQLY RP+I F +PPTVFYPQP VTSAL++LDF     G     V   ALK VL+ +FQQRRKMLRQSLK LL + G TL +E+ATKRPE++
Sbjct:  214 LLNEALPSLNVVQSDVLQVDWTALAELRGGPLSVIGNLPYHITSQILFCLLDNHRTVRQAVVTMQLEVAQRIVAPTRCKDYGILSVLFQLYTRPRINFKLPPTVFYPQPKVTSALVTLDFLQPVHGQPIFDVEPGALKQVLNLSFQQRRKMLRQSLKGLLASRGLTLDEEWATKRPEEL 392
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BLAST of mRNA_H-paniculata_contig12400.1514.1 vs. uniprot
Match: F0Y6X2_AURAN (rRNA adenine N(6)-methyltransferase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6X2_AURAN)

HSP 1 Score: 214 bits (546), Expect = 2.240e-67
Identity = 117/177 (66.10%), Postives = 140/177 (79.10%), Query Frame = 1 
Query:    1 QLLGKSLPT-LTVVESDVLQVDYTKLAELRGGPLSVIGNLPYHITSQILFTLCDHYLSVRRAVVTMQLEVAQRIVAKPSSKQYGILSVVFQLYARPQILFHIPPTVFYPQPSVTSALISLDFTGKGPG--VNQAALKSVLSAAFQQRRKMLRQSLKPLLRAGQTLPDEFATKRPEQV 522
            +LL ++ P   TV+ SDVL VDYTKLA  RGG LSVIGNLPY+ITSQILF LCDH+ SV RAVVTMQ EVA R+VAKP +K YGILSVVFQLYA+P+I F IP T FYPQP VTSAL+++DF   G    V+   L++V++ AF+QRRKMLRQSLK +L  G TLPD+FATKRPE++
Sbjct:   67 ELLEQTYPAPFTVLHSDVLAVDYTKLAAARGGRLSVIGNLPYYITSQILFCLCDHHASVSRAVVTMQHEVALRLVAKPRTKDYGILSVVFQLYAQPKIAFKIPHTAFYPQPKVTSALVAIDFPEGGVDLPVDPRKLRTVVTTAFRQRRKMLRQSLKGILN-GATLPDQFATKRPEEL 242
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BLAST of mRNA_H-paniculata_contig12400.1514.1 vs. uniprot
Match: A0A7S3K3Y0_9STRA (rRNA adenine N(6)-methyltransferase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3Y0_9STRA)

HSP 1 Score: 218 bits (554), Expect = 4.570e-67
Identity = 111/176 (63.07%), Postives = 145/176 (82.39%), Query Frame = 1 
Query:    4 LLGKSLPTLTVVESDVLQVDYTKLAELRGGPLSVIGNLPYHITSQILFTLCDHYLSVRRAVVTMQLEVAQRIVAKPSSKQYGILSVVFQLYARPQILFHIPPTVFYPQPSVTSALISLDFTGKGPG--VNQAALKSVLSAAFQQRRKMLRQSLKPLLRA-GQTLPDEFATKRPEQV 522
            LL +  P+L V+ SDVL++DYTKLA+L+GG L+VIGNLPY+ITSQILF LCDH+ ++RRA VTMQ EVAQR+VA+P +K YGILSVVFQLYARPQILF IP T FYPQP V+SAL++++F    P   V+   L+ V++ +F+QRRKMLRQSLK +L++  +TLPD++ATKRPE++
Sbjct:  152 LLNERYPSLKVLHSDVLEIDYTKLAQLQGGRLNVIGNLPYYITSQILFALCDHHAAIRRACVTMQWEVAQRLVAQPRTKPYGILSVVFQLYARPQILFKIPNTAFYPQPKVSSALVAIEFLHPRPPLPVDPKKLRLVINTSFRQRRKMLRQSLKGILKSVAKTLPDDWATKRPEEL 327
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BLAST of mRNA_H-paniculata_contig12400.1514.1 vs. uniprot
Match: A0A6V1RUH5_HETAK (rRNA adenine N(6)-methyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RUH5_HETAK)

HSP 1 Score: 215 bits (548), Expect = 2.100e-66
Identity = 114/179 (63.69%), Postives = 139/179 (77.65%), Query Frame = 1 
Query:    1 QLLGKSLPTLTVVESDVLQVDYTKLAELRGGPLSVIGNLPYHITSQILFTLCDHYLSVRRAVVTMQLEVAQRIVAKPSSKQYGILSVVFQLYARPQILFHIPPTVFYPQPSVTSALISLDFTGKGP--GVNQAALKSVLSAAFQQRRKMLRQSLKPLLR---AGQTLPDEFATKRPEQV 522
            +LL + LP   VV SD LQV++   A L+GG LSVIGNLPYHITSQILFTL D +  +R+A VTMQ EVA+R+ A+P SK YGILSVVFQLY++P+ILF IPPTVFYPQP V SAL+ +DF  K    GV +A L+ VL+ +FQQRRKMLRQSLKPLL+    G TLP+E+ATKRP+Q+
Sbjct:  144 ELLKERLPGTRVVHSDCLQVNWPAFAALKGGRLSVIGNLPYHITSQILFTLADSHQFIRQAAVTMQWEVAERVCARPGSKDYGILSVVFQLYSKPKILFKIPPTVFYPQPKVASALLMVDFASKQAPKGVRRATLRKVLNTSFQQRRKMLRQSLKPLLKEIGGGFTLPEEWATKRPQQL 322
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BLAST of mRNA_H-paniculata_contig12400.1514.1 vs. uniprot
Match: A0A4D9CR67_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CR67_9STRA)

HSP 1 Score: 225 bits (573), Expect = 6.220e-65
Identity = 123/179 (68.72%), Postives = 144/179 (80.45%), Query Frame = 1 
Query:    4 LLGKSLPTLTVVESDVLQVDYTKLAELRGGPLSVIGNLPYHITSQILFTLCDHYLSVRRAVVTMQLEVAQRIVAKPSSKQYGILSVVFQLYARPQILFHIPPTVFYPQPSVTSALISLDFTGKGPG-----VNQAALKSVLSAAFQQRRKMLRQSLKPLLRA-GQTLPDEFATKRPEQV 522
            LL ++LP+L VV+SDVLQVD+T LAELRGGPLSVIGNLPYHITSQILF L D++ +VR+AVVTMQLEVAQRIVA    K YGILSV+FQLY RP+I F +PPTVFYPQP VTSAL++LDF     G     V   ALK VL+ +FQQRRKMLRQSLK LL + G TL +E+ATKRPE++
Sbjct:  165 LLNEALPSLKVVQSDVLQVDWTALAELRGGPLSVIGNLPYHITSQILFCLLDNHRTVRQAVVTMQLEVAQRIVAPTRCKDYGILSVLFQLYTRPRINFKLPPTVFYPQPKVTSALVTLDFLQPAHGQPLFDVEPGALKQVLNLSFQQRRKMLRQSLKGLLSSRGLTLDEEWATKRPEEL 343
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BLAST of mRNA_H-paniculata_contig12400.1514.1 vs. uniprot
Match: A0A7S2V1T1_9STRA (rRNA adenine N(6)-methyltransferase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1T1_9STRA)

HSP 1 Score: 209 bits (533), Expect = 2.180e-64
Identity = 114/174 (65.52%), Postives = 139/174 (79.89%), Query Frame = 1 
Query:    7 LGKSLPTLTVVESDVLQVDYTKLAELRGGPLSVIGNLPYHITSQILFTLCDHYLSVRRAVVTMQLEVAQRIVAKPSSKQYGILSVVFQLYARPQILFHIPPTVFYPQPSVTSALISLDFTGK-GP-GVNQAALKSVLSAAFQQRRKMLRQSLKPLLRAGQTLPDEFATKRPEQV 522
            L ++LP LTV+ SDVLQV++  L++L+GGPLSV+GNLPYHITSQILF L D+  +VR AVVT Q EVAQRI + P+SK YGILSVVFQL+ RP+ILF IP TVFYP P V SALI LDF+ K GP  V+   LK V+SAAFQQRRKMLR+SL+P L+ G+ LP++F  KRPEQ+
Sbjct:  126 LNEALPDLTVIHSDVLQVNWPALSKLKGGPLSVVGNLPYHITSQILFGLADNPQAVRSAVVTTQWEVAQRICSGPNSKDYGILSVVFQLFTRPRILFKIPNTVFYPAPKVASALIELDFSAKEGPKDVDLMKLKKVISAAFQQRRKMLRRSLQPFLQ-GRKLPEQFEDKRPEQL 298
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BLAST of mRNA_H-paniculata_contig12400.1514.1 vs. uniprot
Match: A0A7S2RVG1_9STRA (rRNA adenine N(6)-methyltransferase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVG1_9STRA)

HSP 1 Score: 206 bits (524), Expect = 4.680e-64
Identity = 113/169 (66.86%), Postives = 133/169 (78.70%), Query Frame = 1 
Query:    1 QLLGKSLPTLTVVESDVLQVDYTKLAELRGGPLSVIGNLPYHITSQILFTLCDHYLSVRRAVVTMQLEVAQRIVAKPSSKQYGILSVVFQLYARPQILFHIPPTVFYPQPSVTSALISLDF--TGKGPGVNQAALKSVLSAAFQQRRKMLRQSLKPLLR--AGQTLPDE 495
            +LL  SLP LTV+ESDVLQVDY  +A+LRGGPL V+GNLPY+ITSQILF+  D   +VRRAVVTMQ EVAQRIVAKP +K YGILSVVFQLY++P++ F IPPTVFYPQP V SAL+++DF  T +   V  A L+ V++ AFQQRRKMLRQSLK LL    G  LPDE
Sbjct:   86 ELLADSLPQLTVLESDVLQVDYQAIADLRGGPLVVVGNLPYYITSQILFSFVDCAPAVRRAVVTMQWEVAQRIVAKPGTKDYGILSVVFQLYSQPRLNFKIPPTVFYPQPKVDSALVTIDFPATREPFPVRAADLRKVITTAFQQRRKMLRQSLKKLLAESGGAPLPDE 254
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BLAST of mRNA_H-paniculata_contig12400.1514.1 vs. uniprot
Match: A0A7S4ECJ3_9STRA (rRNA adenine N(6)-methyltransferase n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ECJ3_9STRA)

HSP 1 Score: 200 bits (508), Expect = 1.870e-60
Identity = 105/167 (62.87%), Postives = 131/167 (78.44%), Query Frame = 1 
Query:   28 LTVVESDVLQVDYTKLAELRGGPLSVIGNLPYHITSQILFTLCDHYLSVRRAVVTMQLEVAQRIVAKPSSKQYGILSVVFQLYARPQILFHIPPTVFYPQPSVTSALISLDFTGKGP--GVNQAALKSVLSAAFQQRRKMLRQSLKPLLRAGQTLPDEFATKRPEQV 522
            +T++E DVL VDY+ L+  RGG LS+IGNLPY+ITSQILF LCDH+ SV++AVVTMQ EVAQR+VAKP ++ YGILSVVFQLYA P+I   IP T FYP P VTSAL+++DF        V  A L++VL+ AF+QRRKMLRQSLK +L  G+  P+EFATKRPE++
Sbjct:  148 ITILEGDVLAVDYSALSAARGGKLSIIGNLPYYITSQILFCLCDHHASVKKAVVTMQWEVAQRLVAKPRTRDYGILSVVFQLYASPKITCKIPNTAFYPVPKVTSALVTVDFPEDRELFPVQPAKLRTVLNTAFRQRRKMLRQSLKSILN-GKPCPEEFATKRPEEL 313
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12400.1514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQU4_ECTSI2.780e-10088.51rRNA adenine N(6)-methyltransferase (Fragment) n=2... [more]
A0A835Z0Q3_9STRA4.110e-8373.56rRNA adenine N(6)-methyltransferase n=1 Tax=Tribon... [more]
W7U2X3_9STRA1.050e-6868.72rRNA adenine N(6)-methyltransferase n=1 Tax=Nannoc... [more]
F0Y6X2_AURAN2.240e-6766.10rRNA adenine N(6)-methyltransferase (Fragment) n=1... [more]
A0A7S3K3Y0_9STRA4.570e-6763.07rRNA adenine N(6)-methyltransferase n=1 Tax=Aureou... [more]
A0A6V1RUH5_HETAK2.100e-6663.69rRNA adenine N(6)-methyltransferase n=1 Tax=Hetero... [more]
A0A4D9CR67_9STRA6.220e-6568.72Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2V1T1_9STRA2.180e-6465.52rRNA adenine N(6)-methyltransferase n=1 Tax=Fibroc... [more]
A0A7S2RVG1_9STRA4.680e-6466.86rRNA adenine N(6)-methyltransferase n=1 Tax=Rhizoc... [more]
A0A7S4ECJ3_9STRA1.870e-6062.87rRNA adenine N(6)-methyltransferase n=2 Tax=Pelago... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12400contigH-paniculata_contig12400:2145..4232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score302.4
Seed ortholog evalue1.4e-79
Seed eggNOG ortholog2880.D8LQU4
Preferred nameTFB2M
KEGG rclassRC00003,RC03257
KEGG koko:K14191,ko:K17653
KEGG ReactionR10716
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000179,GO:0000959,GO:0001510,GO:0003674,GO:0003712,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006364,GO:0006390,GO:0006391,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009058,GO:0009059,GO:0009295,GO:0009451,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022613,GO:0031167,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0032259,GO:0032774,GO:0034470,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042254,GO:0042645,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:0140053,GO:0140098,GO:0140102,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.rRNA (adenine-N6,N6-)-dimethyltransferase activity
EggNOG OGsCOG0030@1,KOG0820@2759
EC2.1.1.183
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03029
Exons3
Model size522
Cds size522
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12400.1514.1prot_H-paniculata_contig12400.1514.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12400 2145..4232 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928960.8049464-CDS-H-paniculata_contig12400:2144..22821622928960.8049464-CDS-H-paniculata_contig12400:2144..2282Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12400 2145..2282 +
1691480682.9099002-CDS-H-paniculata_contig12400:2144..22821691480682.9099002-CDS-H-paniculata_contig12400:2144..2282Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12400 2145..2282 +
1622928960.8164232-CDS-H-paniculata_contig12400:3112..33411622928960.8164232-CDS-H-paniculata_contig12400:3112..3341Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12400 3113..3341 +
1691480682.923306-CDS-H-paniculata_contig12400:3112..33411691480682.923306-CDS-H-paniculata_contig12400:3112..3341Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12400 3113..3341 +
1622928960.8292394-CDS-H-paniculata_contig12400:4077..42321622928960.8292394-CDS-H-paniculata_contig12400:4077..4232Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12400 4078..4232 +
1691480682.9315772-CDS-H-paniculata_contig12400:4077..42321691480682.9315772-CDS-H-paniculata_contig12400:4077..4232Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12400 4078..4232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12400.1514.1

>prot_H-paniculata_contig12400.1514.1 ID=prot_H-paniculata_contig12400.1514.1|Name=mRNA_H-paniculata_contig12400.1514.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp
QLLGKSLPTLTVVESDVLQVDYTKLAELRGGPLSVIGNLPYHITSQILFT
LCDHYLSVRRAVVTMQLEVAQRIVAKPSSKQYGILSVVFQLYARPQILFH
IPPTVFYPQPSVTSALISLDFTGKGPGVNQAALKSVLSAAFQQRRKMLRQ
SLKPLLRAGQTLPDEFATKRPEQV
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mRNA from alignment at H-paniculata_contig12400:2145..4232+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12400.1514.1 ID=mRNA_H-paniculata_contig12400.1514.1|Name=mRNA_H-paniculata_contig12400.1514.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2088bp|location=Sequence derived from alignment at H-paniculata_contig12400:2145..4232+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCTGCTTGGCAAGAGCCTGCCAACCCTCACTGTCGTGGAGTCGGATGT
GTTGCAGGTGGACTACACCAAGCTGGCGGAGTTGAGAGGCGGACCATTAT
CCGTAATCGGGAACCTCCCGTATCATATTACCAGTCAGGTGAAGTGCAGG
AGAGCAAACCCACTCGCAGTCGATGGGCAAAGCAGTCGTTTTGATGAATG
AGTCACTCATATTTGTGCAAGCTTTTTCAACACCTCTGGCACATGATCCG
GAAAAATAACTATGAAAGAATCCAATAGTTTCTCTGTGAAAAGGGGGGGG
GAGGGGGTGCCCCAGAGAAACATAAGAGGGGGGATCTCCCGGCCCTGACC
CCTTACCTTTGCGGAGGCGTTATGTGAATGCTTAAAAGTTCGTGCAGGGC
ACCTTTCTTATGCAGGGATTGTTCAGGGATTGTACGGGGGCCGGTACCAC
AGGGGTTGAAGAGGTAATATGCACCAATGTCAATAAAGTGTGTATGCTTA
CACTTGACTGCAATGGGTTAGTCCGTTCTTGTCAGCTACATGAGTTATTC
ACATCTTTCTTTCAACAAATCCCCACTGTAGTAGGCACACAACCTCAGCG
TGTCAAGGAGCTGATAAATTCGCGTACAATTTTTTTTTTTTTTTGCTATT
CCACTTTTACTCTCATCCCGTATGATGTCGTTCGATTTTGCTGATAAACA
TGTAGTTCCTTGATTGCGTACTACATAGCCTAAGCATGATATATGTTTGT
TGACATTTGTGGTAAGTCGTTAGGCGGACTGACCTTGATTTGGATGGGTT
TGTGGATTCAGCTATCCAGCAGAACTGGATTACTGAGTGTATGCTGTACC
TCAATTGGTTTAGTGGATATGACAACGTTTTTTTACGTTTTTTGCTTTCC
CCTCCGTCCACCCGGCACCCCTTATCCTACCCCTCCGCCCCTCCACCCTA
TTCCACCACCCCCGATAGATTCTTTTCACGCTGTGCGATCACTACCTCAG
CGTACGGCGCGCGGTAGTAACGATGCAACTGGAGGTTGCACAGAGGATTG
TCGCAAAGCCTTCGAGCAAGCAGTACGGAATCCTTAGTGTGGTTTTTCAA
CTGTACGCGAGGCCGCAGATCCTGTTTCATATACCGCCGACGGTTTTCTA
TCCGCAACCTTCGGTTACGTCCGCGCTCATCAGCCTAGACTTCACTGGTG
AGACGTGAAATGAAAAAGAAGAAAACGAAGAGGGCACGTGTGGATAATCA
TGATGATGACGATGGGTGATGGTGCTGATGATGAAAAGCTTGTTATCACA
TCATAGCAAGTCATTGAATAGCTCCCAGGTTAACACCACGTGGCGGTTGT
GGTTGTGGTTGTGGTTGTGGTTGCAATTGTCACGCGAGGTATTATCAATC
GATTAGAAATCACTTGACCTAAAAAAAGACACACACGAGTCTTTGCACAT
GACCAGAGTCACCCGTGTCTCGCTCACATGATTCAGGGTTTGGGCCGGTT
CGCGGTTGGTCATGTGAGAACTTGCCGGTCAAGTGGGAAGAGACCTGGGA
AAAATTCGCGTATTTGTGCAAAGAATGTTCCTGACATTCCTGGGGTTCCT
GGGAACCGGTCCCCTACCGGAGTTCTTTGCCTCATATCGGAACAGCTCCA
TAGCTGTCTCTGATCCGCAAGAAATCACACCTTTTCGTGAATTCTTGAAT
TCTCCTTGGAGAGAAAACAATTGTGTGCTCCGCACTAAATCTACGAACCT
AGACCGAAGACCAGAGTCCGAGCTCAGCCTCTGCGTGAGCCAGCTAGTAA
TTCGTTTGCATACAGTGTTCTTTCACTTTGTCTAAAGTTATCTCTCTGTC
CGGCGCACGCTACTGCAAAACGCGAAAACAAGCGCCACCCTGACGCAAAA
CTTGATTTGCTACTTGGGTTTTGCGTTGCTCAGGCAAGGGGCCAGGGGTG
AACCAGGCCGCGCTCAAGTCGGTCCTGTCGGCGGCTTTTCAACAACGCCG
AAAGATGTTACGACAAAGCCTGAAGCCTCTCTTGCGAGCTGGGCAGACGC
TGCCGGACGAGTTCGCTACCAAGCGTCCAGAACAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig12400:2145..4232+

>mRNA_H-paniculata_contig12400.1514.1 ID=mRNA_H-paniculata_contig12400.1514.1|Name=mRNA_H-paniculata_contig12400.1514.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at H-paniculata_contig12400:2145..4232+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCTGCTTGGCAAGAGCCTGCCAACCCTCACTGTCGTGGAGTCGGATGT
GTTGCAGGTGGACTACACCAAGCTGGCGGAGTTGAGAGGCGGACCATTAT
CCGTAATCGGGAACCTCCCGTATCATATTACCAGTCAGCAGCTGCTTGGC
AAGAGCCTGCCAACCCTCACTGTCGTGGAGTCGGATGTGTTGCAGGTGGA
CTACACCAAGCTGGCGGAGTTGAGAGGCGGACCATTATCCGTAATCGGGA
ACCTCCCGTATCATATTACCAGTCAGATTCTTTTCACGCTGTGCGATCAC
TACCTCAGCGTACGGCGCGCGGTAGTAACGATGCAACTGGAGGTTGCACA
GAGGATTGTCGCAAAGCCTTCGAGCAAGCAGTACGGAATCCTTAGTGTGG
TTTTTCAACTGTACGCGAGGCCGCAGATCCTGTTTCATATACCGCCGACG
GTTTTCTATCCGCAACCTTCGGTTACGTCCGCGCTCATCAGCCTAGACTT
CACTGATTCTTTTCACGCTGTGCGATCACTACCTCAGCGTACGGCGCGCG
GTAGTAACGATGCAACTGGAGGTTGCACAGAGGATTGTCGCAAAGCCTTC
GAGCAAGCAGTACGGAATCCTTAGTGTGGTTTTTCAACTGTACGCGAGGC
CGCAGATCCTGTTTCATATACCGCCGACGGTTTTCTATCCGCAACCTTCG
GTTACGTCCGCGCTCATCAGCCTAGACTTCACTGGCAAGGGGCCAGGGGT
GAACCAGGCCGCGCTCAAGTCGGTCCTGTCGGCGGCTTTTCAACAACGCC
GAAAGATGTTACGACAAAGCCTGAAGCCTCTCTTGCGAGCTGGGCAGACG
CTGCCGGACGAGTTCGCTACCAAGCGTCCAGAACAGGTGGCAAGGGGCCA
GGGGTGAACCAGGCCGCGCTCAAGTCGGTCCTGTCGGCGGCTTTTCAACA
ACGCCGAAAGATGTTACGACAAAGCCTGAAGCCTCTCTTGCGAGCTGGGC
AGACGCTGCCGGACGAGTTCGCTACCAAGCGTCCAGAACAGGTG
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