mRNA_H-paniculata_contig124.1510.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig124.1510.1 vs. uniprot
Match: A0A6H5L3B9_9PHAE (GRIP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L3B9_9PHAE) HSP 1 Score: 637 bits (1642), Expect = 1.270e-207 Identity = 476/1078 (44.16%), Postives = 642/1078 (59.55%), Query Frame = 3
Query: 54 MFSSITSFTEGFKLLSLDALQDEEEDEKKVLDTGDGAPIASTRHRSQSQQPLSTLSALSEERAVTAPXXXXXXXXXXXXVAAEAKTIKEVND-EWDWDDDGSETATKPGRRVRVGVHEQPAEQIVSKQRGDVLDRRETSANMNP--IDSSNALGENPLPGNDFAGMKCVGADPQQRIDKAGSLA------EFRDAS-YAVLRNAGLNDRVRKDCGACGAPFSDASNHITNPSAVLTSPGEASWCIRCREASASGTDNNDTRNATMPASEASNGKVDVSSCTSTSAEVSEHSDKAVEVPVD--IATEVT-----------------RISHDCMAQELK-----------GTAELSSRGIVEPS-GASPVDASELVGVLNELAAARKQASALEGALGGSQAEVHALREQVLMGKDVEEQQTRNATLLRDDIEAARMAYRESSEAHRRSAERVAELERELIVTREAVDNLKAEKSVLLEQMNMAMEGRLELEAQLRQLHTGLTEGQEAARQEGRKEVERLEVRVKELLKDRDRKQTELELQNARRKETRDMARDLESQLTTVQRTAEEHEAELNQMKEEMISLKREATEAKGNEATWATKYEALDRNFKQVRVQGRNVDNEVDQLRQTIAXXXXXXXWLETEGAALAHKVEEEGAERVTVVSSISHERDFLLRQ---VDRLEKEISELRRKQDAEAAEAGARAQTTVVLEEYRARAQQALKRANEITSQTAAENKRLQVELAKLSAEVAKERPMWSKSKDMEEVRQEEVVELKRKLANVDTDRDAAVVSIASLQDRLTEDEEERRNTNASVMRLEAQGKSLKQELQRQQKALAAGQERESMLSAKLSEKDAALRALEEGPRQEPVTMPRETKSDTTSHTPSPRHADVSPRSALDDDKQEAG----AEGIGAEAREIGWKDDGLQMTNQRFRSLSSEGESVDVSGGNVASQLVYVHQLQERMSKDQAEMRLLISELEASRAARDSQANIQTQLEKHLEAALLANKRLEELDKGRNAAINLEYLKNCVVGCLRTSEPSEHARLLPVITTILKLSKEEAEIIAKNITTRAQTEGSFGGSVPPPG 3143
MFS +F EGFK SLDALQD++E+ K D P + Q P+ + ++E + EV D EWDWD G AT R G+ ++ + + + A ++P + S + L ++ ++ AG V A+ R + AG+ A E R+ + N+G + R + S++ P+A+ G + CI + GT++ NA P +S D + +A KA+ + +D +AT T R+ H A+ ++ TA + +V+P+ + D +V + EL+ + AS LEGAL S++EV LRE + +D TR L D++ A RM ++ES+ AH+R+AE+ LE EL R V++L+AE + L +++ +E R LE +LR L G+TEGQEAARQEGR+EVERLE R+++LLKDRDRKQ EL+LQNARRKETR+MARDLESQL V+R A+E E EL++ +++M++LK+ EA + TWATKYEAL+RNFKQVR Q +++E+++ R+ +E E A L +VE EGAERVTVV+S+S ERDFLLRQ VDRLE+E+ ELRR Q+A+A A ARAQTT VLEEYR RAQQALKRANEITSQTA+ENKRL+ E+ KLS EVA++RP+W +SK +EEV + EV ELK K+AN T+ + A+L+ ++ E EEERR+ + SVMRLEAQGKSLKQELQRQQKALAA QE E L +L++++AAL+A E R++ + +D + SP A S D++K + G+G EA W + + + S+ SE +S DV+ G+V QL YVHQL+ERMSK+Q EMR LISELEASRAA D+QA Q QLEK LEAALL KRL++LD GRNAAINLEYLKNCVVG LRTSEPSEHARLLPVITTILKLS++EA +IAKNI+TRAQ +GSFGGS+PP G
Sbjct: 1 MFSGFDNFAEGFKRFSLDALQDQDENTSK--DEQQRLPALP-----EQQHPMEHTESPTKEPP---------------------PQLAEVEDNEWDWDH-GHAGATNAQRDGVGGLRQKHGAHVRNSPHATSV----APAGISPAAVASPSELDQSTF--DEQAGGVVVEAEEALR-ENAGTQAAKEGMEERREGQMFGGETNSGPSTLARDSSAPSSSVEEGFSDNTDTPAAL----GRSEPCIGTIQ---DGTEDIHLGNAPTPDPSSSGKLQDFLEGSKPAAA------KAIGLAIDEGVATNTTNDSSAEGPTDTNWGGERRVDHQENAERIQDGSSPQKSPEAATAGAAGTAVVKPAEDTTTADPLTVVAMRQELSLVKNAASGLEGALRESRSEVQLLRELLATEQDT----TRK---LSDEVNATRMGFQESNAAHQRTAEQSHALEEELYNARTLVESLRAESAALKAKVDEGVEDRHALEGKLRHLQAGVTEGQEAARQEGRQEVERLEARIRDLLKDRDRKQAELDLQNARRKETREMARDLESQLAAVERIAQEREVELSKQRDDMVALKKNTGEATDQKKTWATKYEALERNFKQVRAQSIRIESELEEAREHATR-------IEAEKAVLEERVEVEGAERVTVVASVSQERDFLLRQAIAVDRLEQEVVELRRSQEAQATAAAARAQTTGVLEEYRTRAQQALKRANEITSQTASENKRLKAEMRKLSDEVAQQRPLWEQSKQLEEVHRAEVAELKEKIANQATELGNMAAAAAALEAQVLEKEEERRDAHTSVMRLEAQGKSLKQELQRQQKALAAAQENEVTLQTRLADQEAALQAAENRQRRKHSPEKVDVNADMGKNLSSPTPAVSSLSMGWDEEKHGSRNGTPRRGMGTEATGAAWPE--RRSLGESVSSMPSEADSADVAQGSVGEQLFYVHQLRERMSKEQIEMRSLISELEASRAAADAQAAKQAQLEKQLEAALLDKKRLQDLDSGRNAAINLEYLKNCVVGALRTSEPSEHARLLPVITTILKLSEDEAAVIAKNISTRAQHQGSFGGSLPPGG 1013
BLAST of mRNA_H-paniculata_contig124.1510.1 vs. uniprot
Match: A0A0A1XCD8_ZEUCU (GRIP and coiled-coil domain-containing protein 2 n=3 Tax=Zeugodacus cucurbitae TaxID=28588 RepID=A0A0A1XCD8_ZEUCU) HSP 1 Score: 60.1 bits (144), Expect = 3.130e-5 Identity = 52/157 (33.12%), Postives = 84/157 (53.50%), Query Frame = 3
Query: 2703 SEGESVDVSGGNVASQLVYV--HQLQERMSKDQAEMRLLISELEASRAARDSQANIQTQLEKHLEAALLANKRLEELDKGRNAAINLEYLKNCVVGCLRTSEPSEHARLLPVITTILKLSKEEAEI---IAKNITTRAQTEGSFGGSVPPPGFGGGG 3158
++ + D++ GN +++ ++V H +E ++K ++ +R L + L A + TQ+ L+ L +R E ++ + N EYLKN V+ L S E RL+PV+ TILKLS+EE +I +AK +T+G GS P FGGGG
Sbjct: 1142 NDSNTFDLNTGNSSAESLHVELHATRELLTKQESRVRHLTALL----AENEQDLAKLTQMNDMLKEELRRQERAVEREQHMH---NAEYLKNVVLKFLTLSNGDERIRLVPVLHTILKLSREEKDILNCVAKGQKLPTETQGRGWGSFLPL-FGGGG 1290
BLAST of mRNA_H-paniculata_contig124.1510.1 vs. uniprot
Match: A0A8K0KI64_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0KI64_LADFU) HSP 1 Score: 54.3 bits (129), Expect = 7.730e-5 Identity = 53/136 (38.97%), Postives = 66/136 (48.53%), Query Frame = 3
Query: 2775 ERMSKDQAEMRLLISELEASRAARDSQANIQTQLEKHLEAALLAN--KRLEELDKGRNAAINLEYLKNCVVGCLRTSEPSEHARLLPVITTILKLSKEEAEIIAKNITTRAQTEGSFGGSVPPPGFGGGGTRGWWS 3176
ER SK + LL+SE E S AR +Q N ALL +RLE + A N EYLKN ++ + E RL+PV+TTILKLS EE T++ T S G V G G G +RGW S
Sbjct: 23 ERRSKH---LSLLLSEAE-SEGARLAQQN-----------ALLKEEVRRLERSAERTEHAHNAEYLKNVLIKFITLQGGDERCRLVPVLTTILKLSPEE--------TSQLNTVAS--GGVLDSGHGAGASRGWGS 133 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig124.1510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig124.1510.1 >prot_H-paniculata_contig124.1510.1 ID=prot_H-paniculata_contig124.1510.1|Name=mRNA_H-paniculata_contig124.1510.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1048bp MFSSITSFTEGFKLLSLDALQDEEEDEKKVLDTGDGAPIASTRHRSQSQQback to top mRNA from alignment at H-paniculata_contig124:39665..51496+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig124.1510.1 ID=mRNA_H-paniculata_contig124.1510.1|Name=mRNA_H-paniculata_contig124.1510.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11832bp|location=Sequence derived from alignment at H-paniculata_contig124:39665..51496+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig124:39665..51496+ >mRNA_H-paniculata_contig124.1510.1 ID=mRNA_H-paniculata_contig124.1510.1|Name=mRNA_H-paniculata_contig124.1510.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6288bp|location=Sequence derived from alignment at H-paniculata_contig124:39665..51496+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |