prot_H-paniculata_contig7113.15087.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig7113.15087.1
Unique Nameprot_H-paniculata_contig7113.15087.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length672
Homology
BLAST of mRNA_H-paniculata_contig7113.15087.1 vs. uniprot
Match: A0A6H5JDC5_9PHAE (CS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JDC5_9PHAE)

HSP 1 Score: 301 bits (770), Expect = 2.820e-88
Identity = 246/691 (35.60%), Postives = 316/691 (45.73%), Query Frame = 0
Query:    1 MEEWAPALACCTHVISGLCRHVITPVKVAEHAATPVPVGPGFPRCAQAQSCLFTFPGRSMAQEGGRASAKHRHAESAVACTRSMIHSDVPIDKLTHLGMYTQGVSAMEIHVG--------GRTVTARKPCKRDGEQGKRELLPVDQLNDVAAKALYRRSMARVGKGGEVEVLAARDDLCLALTLKPGDVNLRRELKKVEKMIADAQARENLRSCVALLVHARETEGGRRRIQQRNSSRKAVANSAAESSFPDECKDETAQTAAALRPSAGAVVDIHNSSIKAVKNHKAERETEHKRGEIIDLGPSSPPPSRPLTEAASHHHPQLGAHDANNNQRVISAATEVFGRYEATAGVDDRSGRV--EDSGGGADTKEVTPERRAELGEEELLESGAPSSEEEEPFPTGNGGVCRDGIYAWNQSVHE----------VQVCVRVPDWARARDIRVEIRRSRLSVSVVQLSALRNIAACSAATTTAAAGTPPNSLSDEDGQEDAAKNIGPSPGGSATGSREQCKNKQQTDGTATSSGLSSDDGDASAAIVAVLEGPLSRPVQAGECLWTIETAGRVLLYLQKELPAEGEPGFEWWATVMKGDPEVDVTQCDAGSIASEYPEHARRRGAKALWEHQQKNPEQRRIDEMNEMRMRGARRQIEEEAEQRQRDLDTALRDPKKAEMYRRLQKIMPDTTISLK 671
            ++EW PA+ACCTHV+   C   +  ++ AE   T      G P  AQ      +             SA       A     +   +  P DK        Q       H G         R    R    ++   G+       +  +VAAK LYRR+ A  G G   +V AAR+DL  AL LKP D  + RELKK +K +A+ +ARE+LR         R+TE                                                                             G  +P      + A    H  +G     +            G  EA      R  RV  E+ G G+ + +   E   EL +E+           E+PF T NGG CR+G+YAWNQS+ E          VQV V++P WARA D+RV++ RSRLSVSVV   A ++             GT P       G E +A   GP+    A+ +  +    Q  D      G ++           VL G LSRPVQ  ECLWTIE  GRVLLYLQKELPA+GEPGFEWWA VM+GDPE+DV  CDAGS AS YPEHARRRGAKALWEHQ K+P++R    + E RMR A RQ+EEEAEQRQRDL+ A++DP+KAE+YR+L+KIMPDT+IS+K
Sbjct:  172 LQEWTPAIACCTHVLDECCGDALREIE-AEIGGTGKEARDGVPGVAQGDRRTASAAANDSTDTTRAGSATGTSTGDATDAALAPTGTGAPPDKRQQQQKEGQSGEIYGEHQGTTAPSRGADREAEPRADPPQEESGGRDREAEKTRCREVAAKCLYRRAAALAGGG---DVAAAREDLVRALRLKPRDAAISRELKKADKQLAENEARESLR---------RKTEEX---------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGGGAPTQQLARSPAPGADHAVIGGGKGGHQ-----------GGVEAPENQQQRGPRVSKEEEGKGSCSGD---EESNELSQEQP----------EQPFSTHNGGECRNGLYAWNQSIDEARAHHSNSCRVQVSVKIPPWARASDVRVDLHRSRLSVSVVIPHADKD----------RPRGTRPQF---SHGTETSATTAGPT----ASSNAAKDPAPQGVDPGVVGEGETA---------TPVLAGALSRPVQVDECLWTIERPGRVLLYLQKELPADGEPGFEWWACVMEGDPEIDVLACDAGSDASRYPEHARRRGAKALWEHQNKSPKER----LEEERMRDAYRQMEEEAEQRQRDLEKAMKDPRKAELYRQLKKIMPDTSISIK 750          
BLAST of mRNA_H-paniculata_contig7113.15087.1 vs. uniprot
Match: A0A421GIF5_9STRA (CS domain-containing protein n=5 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GIF5_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 8.640e-5
Identity = 29/85 (34.12%), Postives = 48/85 (56.47%), Query Frame = 0
Query:  525 VLEGPLSRPVQAGECLWTIETAGRVLLYLQKELPAEGEPGFEWWATVMKGDPEVDVTQCDAGSIASEYPEHARRRGAKALWEHQQ 609
            +LEG L   ++A E +W++E+   + + L+K  P        WWA+ +KGDPE+D TQ D+     EY E  +    KA+++ +Q
Sbjct:  166 LLEGELPEKIRADESIWSLESNHTLNISLEKIKPT-------WWASALKGDPEIDTTQVDSRRNIQEYDEATQGAIRKAVFDQRQ 243          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7113.15087.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JDC5_9PHAE2.820e-8835.60CS domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A421GIF5_9STRA8.640e-534.12CS domain-containing protein n=5 Tax=Phytophthora ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 629..649
NoneNo IPR availableCOILSCoilCoilcoord: 180..200
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 132..205
e-value: 2.5E-5
score: 26.2
IPR007052CS domainPFAMPF04969CScoord: 403..440
e-value: 0.015
score: 16.3
coord: 523..555
e-value: 0.7
score: 10.9
IPR007052CS domainPROSITEPS51203CScoord: 398..572
score: 9.907
IPR037898NudC familyPANTHERPTHR12356NUCLEAR MOVEMENT PROTEIN NUDCcoord: 228..625
IPR008978HSP20-like chaperoneSUPERFAMILY49764HSP20-like chaperonescoord: 525..587
IPR008978HSP20-like chaperoneSUPERFAMILY49764HSP20-like chaperonescoord: 403..442

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7113contigH-paniculata_contig7113:1024..5199 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7113.15087.1mRNA_H-paniculata_contig7113.15087.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig7113 643..5645 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig7113.15087.1 ID=prot_H-paniculata_contig7113.15087.1|Name=mRNA_H-paniculata_contig7113.15087.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=672bp
MEEWAPALACCTHVISGLCRHVITPVKVAEHAATPVPVGPGFPRCAQAQS
CLFTFPGRSMAQEGGRASAKHRHAESAVACTRSMIHSDVPIDKLTHLGMY
TQGVSAMEIHVGGRTVTARKPCKRDGEQGKRELLPVDQLNDVAAKALYRR
SMARVGKGGEVEVLAARDDLCLALTLKPGDVNLRRELKKVEKMIADAQAR
ENLRSCVALLVHARETEGGRRRIQQRNSSRKAVANSAAESSFPDECKDET
AQTAAALRPSAGAVVDIHNSSIKAVKNHKAERETEHKRGEIIDLGPSSPP
PSRPLTEAASHHHPQLGAHDANNNQRVISAATEVFGRYEATAGVDDRSGR
VEDSGGGADTKEVTPERRAELGEEELLESGAPSSEEEEPFPTGNGGVCRD
GIYAWNQSVHEVQVCVRVPDWARARDIRVEIRRSRLSVSVVQLSALRNIA
ACSAATTTAAAGTPPNSLSDEDGQEDAAKNIGPSPGGSATGSREQCKNKQ
QTDGTATSSGLSSDDGDASAAIVAVLEGPLSRPVQAGECLWTIETAGRVL
LYLQKELPAEGEPGFEWWATVMKGDPEVDVTQCDAGSIASEYPEHARRRG
AKALWEHQQKNPEQRRIDEMNEMRMRGARRQIEEEAEQRQRDLDTALRDP
KKAEMYRRLQKIMPDTTISLK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR007052CS_dom
IPR037898NudC_fam
IPR008978HSP20-like_chaperone