mRNA_H-paniculata_contig12379.1495.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig12379	contig	H-paniculata_contig12379:3718..5944 +

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928957.2852726-UTR-H-paniculata_contig12379:3717..3729	1622928957.2852726-UTR-H-paniculata_contig12379:3717..3729	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig12379 3718..3729 +
1691480681.5004168-UTR-H-paniculata_contig12379:3717..3729	1691480681.5004168-UTR-H-paniculata_contig12379:3717..3729	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig12379 3718..3729 +
1622928957.4060779-UTR-H-paniculata_contig12379:5711..5944	1622928957.4060779-UTR-H-paniculata_contig12379:5711..5944	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig12379 5712..5944 +
1691480681.557306-UTR-H-paniculata_contig12379:5711..5944	1691480681.557306-UTR-H-paniculata_contig12379:5711..5944	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig12379 5712..5944 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928957.2985914-CDS-H-paniculata_contig12379:3729..3777	1622928957.2985914-CDS-H-paniculata_contig12379:3729..3777	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig12379 3730..3777 +
1691480681.5092072-CDS-H-paniculata_contig12379:3729..3777	1691480681.5092072-CDS-H-paniculata_contig12379:3729..3777	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig12379 3730..3777 +
1622928957.3205106-CDS-H-paniculata_contig12379:4156..4234	1622928957.3205106-CDS-H-paniculata_contig12379:4156..4234	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig12379 4157..4234 +
1691480681.5175736-CDS-H-paniculata_contig12379:4156..4234	1691480681.5175736-CDS-H-paniculata_contig12379:4156..4234	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig12379 4157..4234 +
1622928957.335207-CDS-H-paniculata_contig12379:4553..4817	1622928957.335207-CDS-H-paniculata_contig12379:4553..4817	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig12379 4554..4817 +
1691480681.5283363-CDS-H-paniculata_contig12379:4553..4817	1691480681.5283363-CDS-H-paniculata_contig12379:4553..4817	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig12379 4554..4817 +
1622928957.3549795-CDS-H-paniculata_contig12379:5098..5215	1622928957.3549795-CDS-H-paniculata_contig12379:5098..5215	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig12379 5099..5215 +
1691480681.5410118-CDS-H-paniculata_contig12379:5098..5215	1691480681.5410118-CDS-H-paniculata_contig12379:5098..5215	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig12379 5099..5215 +
1622928957.3892603-CDS-H-paniculata_contig12379:5510..5711	1622928957.3892603-CDS-H-paniculata_contig12379:5510..5711	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig12379 5511..5711 +
1691480681.5490851-CDS-H-paniculata_contig12379:5510..5711	1691480681.5490851-CDS-H-paniculata_contig12379:5510..5711	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig12379 5511..5711 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig12379.1495.1	prot_H-paniculata_contig12379.1495.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig12379 3730..5711 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig12379:3718..5944+
coding sequence from alignment at H-paniculata_contig12379:3718..5944+

protein sequence of mRNA_H-paniculata_contig12379.1495.1

>prot_H-paniculata_contig12379.1495.1 ID=prot_H-paniculata_contig12379.1495.1|Name=mRNA_H-paniculata_contig12379.1495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=236bp
MYNRALAFLSNIDHTQPVAFARVDGLNPTASPCTFRKCFSPEQKQNKSDS
AASEGCCSDFTNPCHVTVYPEHPEVNRTYQYKDYGPGGLFWPYGGSGAFV
SAGLAMDVVGGMEGWDRCTHLFNSMNTDVQFAQCIKTHGYSMGSYREGFF
NLETAIPDKIQEALSSDCQVMGVHLGLKHLGNYTTESFGAAISAVRDEDE
AWTGRGDGIKNACPKAWDAISRWQNESESYVMSHS*

mRNA from alignment at H-paniculata_contig12379:3718..5944+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig12379.1495.1 ID=mRNA_H-paniculata_contig12379.1495.1|Name=mRNA_H-paniculata_contig12379.1495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2227bp|location=Sequence derived from alignment at H-paniculata_contig12379:3718..5944+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATACTGTGTTCATGTACAACAGAGCTCTTGCTTTCCTCAGCAATATCGA
CCATACTCAGGTGGCACACCGGTCAACTATTCATCGCCAGACGTGGCGAT
GTTGGGTTCTACGGAGTAGCCTAAATATGAGCGACAGTGGTGGTGTTTTG
TGGTCTGCTGAGCAACAAAACAAAGCATGTTGGCGCTGCCATTGAAAATA
GTGCGTACGACAGACAGTCATCTGAATTGCATCATAGTGTGTACAGCAGT
GAATCTGACGCGATGTACGTGTCGAAGTTTACTCTCCAAGCGGGAAGAAT
TGCATCAGAGCCACTTCAGCGGGAGATATCGCTTGGTTCTTCAATCGGGT
ACGGAATAGATGTACTGCGTTTACGATAGCTTGACGAAACACTGACGGCC
CGAAACGTGCTGATTGCCCTTACGGTATGCCGTGTGCAGCCCGTGGCATT
CGCCAGGGTTGATGGTCTGAATCCAACGGCATCTCCCTGTACGTTCAGGA
AGTGCTTCTCACCAGAGGTGAGCAAGAGTAGGCGTTGCCGCGAAAATGTG
TCTTGATATTCAATCATTTTCTTCTTGGTGTGTCAAGTACCACACCCTCA
TGGTAGGAAAACGTGAGCATGATATAAGATACTTCGCGAGTTACAGGTAC
CCACCTTGCAACACAAAGCACACAACTGTGCTAGCTCGACATCCTGTCTC
ATATGCTGTTCGTTGGTCGTTCTCCCCAACGACAGTCATACCAAGCGCTG
ATACATCACCCTAGCGGCATGGTTCCCTATAAATTTTCATGTTGACAGCT
TTTCATCACCGCTCAATCGCCCTATATACCCCTCAGCAAAAACAAAACAA
GTCGGACTCGGCGGCGTCCGAAGGCTGCTGTTCGGACTTCACCAATCCGT
GCCACGTGACCGTCTATCCGGAGCACCCAGAAGTCAACAGAACCTACCAA
TACAAGGACTATGGTCCCGGGGGGCTTTTTTGGCCTTACGGTGGATCGGG
AGCATTCGTGAGCGCGGGATTGGCGATGGATGTCGTCGGGGGCATGGAGG
GCTGGGATCGATGCACTCACCTGTTTAACAGCATGAACACTGATGTGCAG
GTATATATCGCAACTCTACCATCCAATCCTTAGTTCGTGTATGTGTTCAC
ACAAGTTTATCCTGAGTTAGAATTGCATTCGTGTCTCAAATAAAGCACAC
ATAAATGAAGTTCGTGCTTCTACGCCATACGTATCTGCCGAAGTGTACAT
TCAGTTAAAATGAGTAACATCATCCTGATCGACACAGAGCTGGACCTCTG
GTTCAGGGGGTACTGTGCATGCGATGTCAACAGAGAATATCATCGATGCT
CCTGTTTCGCCGCTCTAAAACTTAACCACAGTTCGCGCAATGCATCAAGA
CACATGGATACTCGATGGGAAGCTACCGCGAGGGATTTTTCAACCTGGAA
ACAGCAATTCCCGACAAGATTCAAGAAGCTCTGTCCTCAGATTGTCAGGT
GCGCGGCCACCGGCCTGCATGCCCCCAAGTTTTATCCGTTCTAGAGGACA
AGAGATCTAGTTTGAGAGAAGCTTGTCCTTCACGGCACTTGTCGAAAGAA
AACGTTTAGCGTTTCCACCTTTTCTCTGCGGTTTAGAAGTAGTAGTTAGA
TACTCATGGTCACCACTTACCAGTTCAACAGATCACCTTCCTTGGGATAA
ATCTATTTCCGACAAGTAAAGCTTTGTGCTTGGTAGTCCGGAGAACCTAG
GCGCACGTGTTTCTTGTCACTGAACGAATATGCCCGCAAGCAGGTAATGG
GGGTACACCTTGGGCTGAAGCATTTGGGAAACTACACGACTGAATCATTC
GGAGCTGCTATATCCGCGGTTCGAGACGAAGATGAGGCCTGGACAGGGCG
TGGAGATGGGATCAAAAATGCGTGCCCGAAGGCATGGGATGCCATCTCGC
GATGGCAAAACGAGAGCGAGAGCTATGTTATGTCGCACTCGTGATACCGG
ACACTGCAGTGGCTTTAGATGGCTATAAACTGCGGCTTGCGCATAGAATT
TATCCATGCGTACTCCACATTTTGCGAATGTTGTGTTCATTATTGCGTGT
CGGTTCTTGTTGATCGAGTGAGTGACCATCATTCCCTGGTGCCAATATAT
GGATCATTCATAGCGACTGATTATGAACTTTTAGATCGATGAACATACAT
CCATATCGAATATGTAATGACTCGTAT

Coding sequence (CDS) from alignment at H-paniculata_contig12379:3718..5944+

>mRNA_H-paniculata_contig12379.1495.1 ID=mRNA_H-paniculata_contig12379.1495.1|Name=mRNA_H-paniculata_contig12379.1495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1416bp|location=Sequence derived from alignment at H-paniculata_contig12379:3718..5944+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACAACAGAGCTCTTGCTTTCCTCAGCAATATCGACCATACTCAGAT
GTACAACAGAGCTCTTGCTTTCCTCAGCAATATCGACCATACTCAGCCCG
TGGCATTCGCCAGGGTTGATGGTCTGAATCCAACGGCATCTCCCTGTACG
TTCAGGAAGTGCTTCTCACCAGAGCCCGTGGCATTCGCCAGGGTTGATGG
TCTGAATCCAACGGCATCTCCCTGTACGTTCAGGAAGTGCTTCTCACCAG
AGCAAAAACAAAACAAGTCGGACTCGGCGGCGTCCGAAGGCTGCTGTTCG
GACTTCACCAATCCGTGCCACGTGACCGTCTATCCGGAGCACCCAGAAGT
CAACAGAACCTACCAATACAAGGACTATGGTCCCGGGGGGCTTTTTTGGC
CTTACGGTGGATCGGGAGCATTCGTGAGCGCGGGATTGGCGATGGATGTC
GTCGGGGGCATGGAGGGCTGGGATCGATGCACTCACCTGTTTAACAGCAT
GAACACTGATGTGCAGCAAAAACAAAACAAGTCGGACTCGGCGGCGTCCG
AAGGCTGCTGTTCGGACTTCACCAATCCGTGCCACGTGACCGTCTATCCG
GAGCACCCAGAAGTCAACAGAACCTACCAATACAAGGACTATGGTCCCGG
GGGGCTTTTTTGGCCTTACGGTGGATCGGGAGCATTCGTGAGCGCGGGAT
TGGCGATGGATGTCGTCGGGGGCATGGAGGGCTGGGATCGATGCACTCAC
CTGTTTAACAGCATGAACACTGATGTGCAGTTCGCGCAATGCATCAAGAC
ACATGGATACTCGATGGGAAGCTACCGCGAGGGATTTTTCAACCTGGAAA
CAGCAATTCCCGACAAGATTCAAGAAGCTCTGTCCTCAGATTGTCAGTTC
GCGCAATGCATCAAGACACATGGATACTCGATGGGAAGCTACCGCGAGGG
ATTTTTCAACCTGGAAACAGCAATTCCCGACAAGATTCAAGAAGCTCTGT
CCTCAGATTGTCAGGTAATGGGGGTACACCTTGGGCTGAAGCATTTGGGA
AACTACACGACTGAATCATTCGGAGCTGCTATATCCGCGGTTCGAGACGA
AGATGAGGCCTGGACAGGGCGTGGAGATGGGATCAAAAATGCGTGCCCGA
AGGCATGGGATGCCATCTCGCGATGGCAAAACGAGAGCGAGAGCTATGTT
ATGTCGCACTCGTGAGTAATGGGGGTACACCTTGGGCTGAAGCATTTGGG
AAACTACACGACTGAATCATTCGGAGCTGCTATATCCGCGGTTCGAGACG
AAGATGAGGCCTGGACAGGGCGTGGAGATGGGATCAAAAATGCGTGCCCG
AAGGCATGGGATGCCATCTCGCGATGGCAAAACGAGAGCGAGAGCTATGT
TATGTCGCACTCGTGA

mRNA_H-paniculata_contig12379.1495.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

ZOOM

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POSITION

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