prot_H-paniculata_contig69847.14927.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig69847.14927.1
Unique Name	prot_H-paniculata_contig69847.14927.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	71

Homology

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BLAST of mRNA_H-paniculata_contig69847.14927.1 vs. uniprot
Match: A0A7T8G5I0_SCYLO (30S ribosomal protein S18, chloroplastic n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8G5I0_SCYLO)

HSP 1 Score: 135 bits (340), Expect = 7.430e-40
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0

Query:    1 KVRRQPFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN 70
            KVRRQPFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN
Sbjct:   38 KVRRQPFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN 107

[Close]

BLAST of mRNA_H-paniculata_contig69847.14927.1 vs. uniprot
Match: D1J7B6_ECTSI (30S ribosomal protein S18, chloroplastic n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J7B6_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 2.130e-39
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 0

Query:    1 KVRRQPFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN 70
            KVRRQPFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLSK+IKRARYLHLLPFVTSVEN
Sbjct:   38 KVRRQPFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLSKSIKRARYLHLLPFVTSVEN 107

[Close]

BLAST of mRNA_H-paniculata_contig69847.14927.1 vs. uniprot
Match: A0A6B7EYX7_9PHAE (30S ribosomal protein S18 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EYX7_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 3.810e-39
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 0

Query:    1 KVRRQPFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN 70
            KVRRQPFKLKPTATIDYKQVDILLAF TEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN
Sbjct:   34 KVRRQPFKLKPTATIDYKQVDILLAFCTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN 103

[Close]

BLAST of mRNA_H-paniculata_contig69847.14927.1 vs. uniprot
Match: A0A7D3QC30_SACLA (30S ribosomal protein S18, chloroplastic n=26 Tax=Laminariales TaxID=2886 RepID=A0A7D3QC30_SACLA)

HSP 1 Score: 129 bits (323), Expect = 1.470e-37
Identity = 66/70 (94.29%), Postives = 67/70 (95.71%), Query Frame = 0

Query:    1 KVRRQPFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN 70
            K RRQPFKLKP  TIDYKQVDILL+FSTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN
Sbjct:   15 KTRRQPFKLKPNETIDYKQVDILLSFSTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN 84

[Close]

BLAST of mRNA_H-paniculata_contig69847.14927.1 vs. uniprot
Match: A0A1I9LVI1_9PHAE (30S ribosomal protein S18, chloroplastic n=2 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVI1_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 4.470e-35
Identity = 64/70 (91.43%), Postives = 66/70 (94.29%), Query Frame = 0

Query:    1 KVRRQPFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN 70
            KVRR+P KLKPTA IDYKQVDILLAFSTEHGKIKSRR T LTLKQQRQLSK+IKRARYLHLLPFVTSVEN
Sbjct:   54 KVRREPLKLKPTARIDYKQVDILLAFSTEHGKIKSRRLTKLTLKQQRQLSKSIKRARYLHLLPFVTSVEN 123

[Close]

BLAST of mRNA_H-paniculata_contig69847.14927.1 vs. uniprot
Match: A0A8F0JZ14_9PHAE (Ribosomal protein S18 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZ14_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.070e-34
Identity = 62/70 (88.57%), Postives = 66/70 (94.29%), Query Frame = 0

Query:    1 KVRRQPFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN 70
            K +RQPFKLKP+ TIDYKQVDILL+FSTEHGKIKSRRSTNLTLKQQRQLSK+IKRARYL LLPFV SVEN
Sbjct:   12 KTKRQPFKLKPSETIDYKQVDILLSFSTEHGKIKSRRSTNLTLKQQRQLSKSIKRARYLRLLPFVISVEN 81

[Close]

BLAST of mRNA_H-paniculata_contig69847.14927.1 vs. uniprot
Match: A0A8F0F760_9PHAE (Ribosomal protein S18 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F760_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 7.090e-27
Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 0

Query:    1 KVRRQPFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN 70
            K +RQ FKLK   TIDYKQVDILL+F T++GKI+SRRSTNLTLKQQRQLSK+IKRARYL LLP V S EN
Sbjct:    3 KNKRQTFKLKSKDTIDYKQVDILLSFLTDYGKIRSRRSTNLTLKQQRQLSKSIKRARYLRLLPLVLSPEN 72

[Close]

BLAST of mRNA_H-paniculata_contig69847.14927.1 vs. uniprot
Match: A0A2R4QPW6_9PHAE (30S ribosomal protein S18 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPW6_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 7.290e-27
Identity = 53/70 (75.71%), Postives = 60/70 (85.71%), Query Frame = 0

Query:    1 KVRRQPFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN 70
            K +RQ +K+K    IDYKQVDILL+F TEHGKIK RRSTNLTLKQQRQLSKAIK AR L+LLPFVTS+E+
Sbjct:    4 KAKRQTYKIKSNERIDYKQVDILLSFLTEHGKIKPRRSTNLTLKQQRQLSKAIKTARSLNLLPFVTSLED 73

[Close]

BLAST of mRNA_H-paniculata_contig69847.14927.1 vs. uniprot
Match: A0A141BSF9_9PHAE (30S ribosomal protein S18, chloroplastic n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSF9_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 9.500e-26
Identity = 51/70 (72.86%), Postives = 60/70 (85.71%), Query Frame = 0

Query:    1 KVRRQPFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN 70
            K +R  +KLKP   IDYKQVDIL++F TEHGKIKSRRST LTL+QQRQLS+AIK AR L+LLPFVTS+E+
Sbjct:    8 KTKRNNYKLKPNEKIDYKQVDILVSFLTEHGKIKSRRSTELTLQQQRQLSRAIKTARSLNLLPFVTSLED 77

[Close]

BLAST of mRNA_H-paniculata_contig69847.14927.1 vs. uniprot
Match: A0A8E6D6A7_9PHAE (30S ribosomal protein S18, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D6A7_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.020e-18
Identity = 42/65 (64.62%), Postives = 48/65 (73.85%), Query Frame = 0

Query:    6 PFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN 70
            P K+    TIDYKQ+D+LL+  TE GKIK R+ T  TLKQQRQLSKA+KRAR L LLPFVT  E 
Sbjct:   14 PIKITAKHTIDYKQIDLLLSCLTEQGKIKPRKITEFTLKQQRQLSKAVKRARILSLLPFVTVTEK 78

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig69847.14927.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig69847.14927.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A7T8G5I0_SCYLO	7.430e-40	100.00	30S ribosomal protein S18, chloroplastic n=4 Tax=S...	[more]
D1J7B6_ECTSI	2.130e-39	98.57	30S ribosomal protein S18, chloroplastic n=2 Tax=E...	[more]
A0A6B7EYX7_9PHAE	3.810e-39	98.57	30S ribosomal protein S18 n=1 Tax=Cladosiphon okam...	[more]
A0A7D3QC30_SACLA	1.470e-37	94.29	30S ribosomal protein S18, chloroplastic n=26 Tax=...	[more]
A0A1I9LVI1_9PHAE	4.470e-35	91.43	30S ribosomal protein S18, chloroplastic n=2 Tax=P...	[more]
A0A8F0JZ14_9PHAE	1.070e-34	88.57	Ribosomal protein S18 n=1 Tax=Desmarestia aculeata...	[more]
A0A8F0F760_9PHAE	7.090e-27	77.14	Ribosomal protein S18 n=1 Tax=Protohalopteris sp. ...	[more]
A0A2R4QPW6_9PHAE	7.290e-27	75.71	30S ribosomal protein S18 n=3 Tax=Fucaceae TaxID=3...	[more]
A0A141BSF9_9PHAE	9.500e-26	72.86	30S ribosomal protein S18, chloroplastic n=13 Tax=...	[more]
A0A8E6D6A7_9PHAE	2.020e-18	64.62	30S ribosomal protein S18, chloroplastic n=1 Tax=I...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001648	Ribosomal protein S18	PRINTS	PR00974	RIBOSOMALS18	coord: 22..32 score: 41.05 coord: 54..64 score: 70.25 coord: 40..54 score: 50.3 coord: 32..39 score: 59.85
IPR001648	Ribosomal protein S18	TIGRFAM	TIGR00165	TIGR00165	coord: 7..66 e-value: 1.6E-19 score: 67.8
IPR001648	Ribosomal protein S18	PFAM	PF01084	Ribosomal_S18	coord: 13..62 e-value: 2.7E-20 score: 72.3
IPR001648	Ribosomal protein S18	HAMAP	MF_00270	Ribosomal_S18	coord: 4..67 score: 17.243
IPR036870	Ribosomal protein S18 superfamily	GENE3D	4.10.640.10		coord: 1..69 e-value: 7.9E-24 score: 85.4
IPR036870	Ribosomal protein S18 superfamily	SUPERFAMILY	46911	Ribosomal protein S18	coord: 5..66
None	No IPR available	PANTHER	PTHR13479:SF40	28S RIBOSOMAL PROTEIN S18C, MITOCHONDRIAL	coord: 3..66
None	No IPR available	PANTHER	PTHR13479	30S RIBOSOMAL PROTEIN S18	coord: 3..66
None	No IPR available	PRODOM	PD002239		coord: 15..65 e-value: 1.0E-12 score: 170.0

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig69847	contig	H-paniculata_contig69847:394..606 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig69847.14927.1	mRNA_H-paniculata_contig69847.14927.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig69847 394..606 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig69847.14927.1 ID=prot_H-paniculata_contig69847.14927.1|Name=mRNA_H-paniculata_contig69847.14927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
KVRRQPFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLS
KAIKRARYLHLLPFVTSVEN*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001648	Ribosomal_S18
IPR036870	Ribosomal_S18_sf