mRNA_H-paniculata_contig69847.14927.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig69847.14927.1
Unique NamemRNA_H-paniculata_contig69847.14927.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig69847.14927.1 vs. uniprot
Match: A0A7T8G5I0_SCYLO (30S ribosomal protein S18, chloroplastic n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8G5I0_SCYLO)

HSP 1 Score: 135 bits (340), Expect = 7.430e-40
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:    1 KVRRQPFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN 210
            KVRRQPFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN
Sbjct:   38 KVRRQPFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN 107
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BLAST of mRNA_H-paniculata_contig69847.14927.1 vs. uniprot
Match: D1J7B6_ECTSI (30S ribosomal protein S18, chloroplastic n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J7B6_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 2.130e-39
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:    1 KVRRQPFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN 210
            KVRRQPFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLSK+IKRARYLHLLPFVTSVEN
Sbjct:   38 KVRRQPFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLSKSIKRARYLHLLPFVTSVEN 107
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BLAST of mRNA_H-paniculata_contig69847.14927.1 vs. uniprot
Match: A0A6B7EYX7_9PHAE (30S ribosomal protein S18 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EYX7_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 3.810e-39
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:    1 KVRRQPFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN 210
            KVRRQPFKLKPTATIDYKQVDILLAF TEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN
Sbjct:   34 KVRRQPFKLKPTATIDYKQVDILLAFCTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN 103
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BLAST of mRNA_H-paniculata_contig69847.14927.1 vs. uniprot
Match: A0A7D3QC30_SACLA (30S ribosomal protein S18, chloroplastic n=26 Tax=Laminariales TaxID=2886 RepID=A0A7D3QC30_SACLA)

HSP 1 Score: 129 bits (323), Expect = 1.470e-37
Identity = 66/70 (94.29%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:    1 KVRRQPFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN 210
            K RRQPFKLKP  TIDYKQVDILL+FSTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN
Sbjct:   15 KTRRQPFKLKPNETIDYKQVDILLSFSTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN 84
[Close]
BLAST of mRNA_H-paniculata_contig69847.14927.1 vs. uniprot
Match: A0A1I9LVI1_9PHAE (30S ribosomal protein S18, chloroplastic n=2 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVI1_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 4.470e-35
Identity = 64/70 (91.43%), Postives = 66/70 (94.29%), Query Frame = 1 
Query:    1 KVRRQPFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN 210
            KVRR+P KLKPTA IDYKQVDILLAFSTEHGKIKSRR T LTLKQQRQLSK+IKRARYLHLLPFVTSVEN
Sbjct:   54 KVRREPLKLKPTARIDYKQVDILLAFSTEHGKIKSRRLTKLTLKQQRQLSKSIKRARYLHLLPFVTSVEN 123
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BLAST of mRNA_H-paniculata_contig69847.14927.1 vs. uniprot
Match: A0A8F0JZ14_9PHAE (Ribosomal protein S18 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZ14_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.070e-34
Identity = 62/70 (88.57%), Postives = 66/70 (94.29%), Query Frame = 1 
Query:    1 KVRRQPFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN 210
            K +RQPFKLKP+ TIDYKQVDILL+FSTEHGKIKSRRSTNLTLKQQRQLSK+IKRARYL LLPFV SVEN
Sbjct:   12 KTKRQPFKLKPSETIDYKQVDILLSFSTEHGKIKSRRSTNLTLKQQRQLSKSIKRARYLRLLPFVISVEN 81
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BLAST of mRNA_H-paniculata_contig69847.14927.1 vs. uniprot
Match: A0A8F0F760_9PHAE (Ribosomal protein S18 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F760_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 7.090e-27
Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    1 KVRRQPFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN 210
            K +RQ FKLK   TIDYKQVDILL+F T++GKI+SRRSTNLTLKQQRQLSK+IKRARYL LLP V S EN
Sbjct:    3 KNKRQTFKLKSKDTIDYKQVDILLSFLTDYGKIRSRRSTNLTLKQQRQLSKSIKRARYLRLLPLVLSPEN 72
[Close]
BLAST of mRNA_H-paniculata_contig69847.14927.1 vs. uniprot
Match: A0A2R4QPW6_9PHAE (30S ribosomal protein S18 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPW6_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 7.290e-27
Identity = 53/70 (75.71%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    1 KVRRQPFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN 210
            K +RQ +K+K    IDYKQVDILL+F TEHGKIK RRSTNLTLKQQRQLSKAIK AR L+LLPFVTS+E+
Sbjct:    4 KAKRQTYKIKSNERIDYKQVDILLSFLTEHGKIKPRRSTNLTLKQQRQLSKAIKTARSLNLLPFVTSLED 73
[Close]
BLAST of mRNA_H-paniculata_contig69847.14927.1 vs. uniprot
Match: A0A141BSF9_9PHAE (30S ribosomal protein S18, chloroplastic n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSF9_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 9.500e-26
Identity = 51/70 (72.86%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    1 KVRRQPFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN 210
            K +R  +KLKP   IDYKQVDIL++F TEHGKIKSRRST LTL+QQRQLS+AIK AR L+LLPFVTS+E+
Sbjct:    8 KTKRNNYKLKPNEKIDYKQVDILVSFLTEHGKIKSRRSTELTLQQQRQLSRAIKTARSLNLLPFVTSLED 77
[Close]
BLAST of mRNA_H-paniculata_contig69847.14927.1 vs. uniprot
Match: A0A8E6D6A7_9PHAE (30S ribosomal protein S18, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D6A7_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.020e-18
Identity = 42/65 (64.62%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:   16 PFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLSKAIKRARYLHLLPFVTSVEN 210
            P K+    TIDYKQ+D+LL+  TE GKIK R+ T  TLKQQRQLSKA+KRAR L LLPFVT  E 
Sbjct:   14 PIKITAKHTIDYKQIDLLLSCLTEQGKIKPRKITEFTLKQQRQLSKAVKRARILSLLPFVTVTEK 78
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig69847.14927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7T8G5I0_SCYLO7.430e-40100.0030S ribosomal protein S18, chloroplastic n=4 Tax=S... [more]
D1J7B6_ECTSI2.130e-3998.5730S ribosomal protein S18, chloroplastic n=2 Tax=E... [more]
A0A6B7EYX7_9PHAE3.810e-3998.5730S ribosomal protein S18 n=1 Tax=Cladosiphon okam... [more]
A0A7D3QC30_SACLA1.470e-3794.2930S ribosomal protein S18, chloroplastic n=26 Tax=... [more]
A0A1I9LVI1_9PHAE4.470e-3591.4330S ribosomal protein S18, chloroplastic n=2 Tax=P... [more]
A0A8F0JZ14_9PHAE1.070e-3488.57Ribosomal protein S18 n=1 Tax=Desmarestia aculeata... [more]
A0A8F0F760_9PHAE7.090e-2777.14Ribosomal protein S18 n=1 Tax=Protohalopteris sp. ... [more]
A0A2R4QPW6_9PHAE7.290e-2775.7130S ribosomal protein S18 n=3 Tax=Fucaceae TaxID=3... [more]
A0A141BSF9_9PHAE9.500e-2672.8630S ribosomal protein S18, chloroplastic n=13 Tax=... [more]
A0A8E6D6A7_9PHAE2.020e-1864.6230S ribosomal protein S18, chloroplastic n=1 Tax=I... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig69847contigH-paniculata_contig69847:394..606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score71.2
Seed ortholog evalue2.1e-10
Seed eggNOG ortholog395961.Cyan7425_0902
Preferred namerpsR
KEGG koko:K02963,ko:K03111,ko:K15125
KEGG Pathwayko03010,ko03030,ko03430,ko03440,ko05133,map03010,map03030,map03430,map03440,map05133
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0022626,GO:0022627,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
EggNOG OGs1G7NE@1117,3KII5@43988,COG0238@1,COG0238@2
COG Functional cat.J
Best tax levelCyanothece
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko00536,ko03011,ko03029,ko03032,ko03400
Exons1
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930839.9312441-CDS-H-paniculata_contig69847:393..6061622930839.9312441-CDS-H-paniculata_contig69847:393..606Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig69847 394..606 -
1691481475.950615-CDS-H-paniculata_contig69847:393..6061691481475.950615-CDS-H-paniculata_contig69847:393..606Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig69847 394..606 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig69847.14927.1prot_H-paniculata_contig69847.14927.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig69847 394..606 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig69847.14927.1

>prot_H-paniculata_contig69847.14927.1 ID=prot_H-paniculata_contig69847.14927.1|Name=mRNA_H-paniculata_contig69847.14927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
KVRRQPFKLKPTATIDYKQVDILLAFSTEHGKIKSRRSTNLTLKQQRQLS
KAIKRARYLHLLPFVTSVEN*
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mRNA from alignment at H-paniculata_contig69847:394..606-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig69847.14927.1 ID=mRNA_H-paniculata_contig69847.14927.1|Name=mRNA_H-paniculata_contig69847.14927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=213bp|location=Sequence derived from alignment at H-paniculata_contig69847:394..606- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGTTAGAAGACAACCATTTAAACTTAAGCCAACGGCAACAATTGATTA
TAAGCAAGTCGATATATTATTAGCTTTTTCCACAGAGCATGGGAAAATAA
AATCCCGACGATCAACTAATCTAACCTTAAAACAGCAAAGACAACTTTCA
AAAGCTATTAAAAGAGCTCGATATTTACATTTATTACCTTTCGTAACATC
AGTAGAGAACTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig69847:394..606-

>mRNA_H-paniculata_contig69847.14927.1 ID=mRNA_H-paniculata_contig69847.14927.1|Name=mRNA_H-paniculata_contig69847.14927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig69847:394..606- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGTTAGAAGACAACCATTTAAACTTAAGCCAACGGCAACAATTGATTA
TAAGCAAGTCGATATATTATTAGCTTTTTCCACAGAGCATGGGAAAATAA
AATCCCGACGATCAACTAATCTAACCTTAAAACAGCAAAGACAACTTTCA
AAAGCTATTAAAAGAGCTCGATATTTACATTTATTACCTTTCGTAACATC
AGTAGAGAACTAAAAAGTTAGAAGACAACCATTTAAACTTAAGCCAACGG
CAACAATTGATTATAAGCAAGTCGATATATTATTAGCTTTTTCCACAGAG
CATGGGAAAATAAAATCCCGACGATCAACTAATCTAACCTTAAAACAGCA
AAGACAACTTTCAAAAGCTATTAAAAGAGCTCGATATTTACATTTATTAC
CTTTCGTAACATCAGTAGAGAACTAA
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