prot_H-paniculata_contig69847.14926.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig69847.14926.1
Unique Nameprot_H-paniculata_contig69847.14926.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length104
Homology
[Close]
BLAST of mRNA_H-paniculata_contig69847.14926.1 vs. uniprot
Match: A0A1L2F1V5_9PHAE (Photosystem I assembly protein Ycf3 n=58 Tax=Phaeophyceae TaxID=2870 RepID=A0A1L2F1V5_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 3.950e-40
Identity = 69/72 (95.83%), Postives = 72/72 (100.00%), Query Frame = 0 
Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS 72
            MSRSQRNDNFIDKTFTI+ADIILKVFPASKEEK+AFFYY+DGMSAQSEGEYAEALENYYEALQLEEDPYDRS
Sbjct:    1 MSRSQRNDNFIDKTFTIVADIILKVFPASKEEKEAFFYYKDGMSAQSEGEYAEALENYYEALQLEEDPYDRS 72
[Close]
BLAST of mRNA_H-paniculata_contig69847.14926.1 vs. uniprot
Match: B2XT84_HETAK (Photosystem I assembly protein Ycf3 n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XT84_HETAK)

HSP 1 Score: 137 bits (345), Expect = 3.410e-39
Identity = 66/71 (92.96%), Postives = 70/71 (98.59%), Query Frame = 0 
Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDR 71
            M RSQRNDNFIDKTFT+MADI+LKVFPASKEEK+AFFYYRDGMSAQSEGEYAEALENYYEALQ+EEDPYDR
Sbjct:    1 MGRSQRNDNFIDKTFTVMADILLKVFPASKEEKEAFFYYRDGMSAQSEGEYAEALENYYEALQIEEDPYDR 71
[Close]
BLAST of mRNA_H-paniculata_contig69847.14926.1 vs. uniprot
Match: A0A023HBL3_9STRA (Photosystem I assembly protein Ycf3 n=10 Tax=Ochrophyta TaxID=2696291 RepID=A0A023HBL3_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.460e-38
Identity = 66/72 (91.67%), Postives = 70/72 (97.22%), Query Frame = 0 
Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS 72
            M RSQRNDNFIDKTFTI+ADI+LK+ PASK+EKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS
Sbjct:    1 MGRSQRNDNFIDKTFTIVADILLKILPASKQEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS 72
[Close]
BLAST of mRNA_H-paniculata_contig69847.14926.1 vs. uniprot
Match: J9QSV9_9STRA (Photosystem I assembly protein Ycf3 n=3 Tax=Pelagomonadales TaxID=54409 RepID=J9QSV9_9STRA)

HSP 1 Score: 135 bits (339), Expect = 2.860e-38
Identity = 64/72 (88.89%), Postives = 71/72 (98.61%), Query Frame = 0 
Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS 72
            M RSQRNDNFIDKTFT++ADI+LKVFPASK+EKQAFFYYRDGMSAQ+EG+YAEALENYYEALQ+EEDPYDRS
Sbjct:    1 MGRSQRNDNFIDKTFTLLADILLKVFPASKQEKQAFFYYRDGMSAQAEGDYAEALENYYEALQIEEDPYDRS 72
[Close]
BLAST of mRNA_H-paniculata_contig69847.14926.1 vs. uniprot
Match: A0A7S6U9V8_9STRA (Photosystem I assembly protein Ycf3 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9V8_9STRA)

HSP 1 Score: 134 bits (338), Expect = 3.500e-38
Identity = 65/72 (90.28%), Postives = 71/72 (98.61%), Query Frame = 0 
Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS 72
            M+RSQ+NDNFIDKTFT+MADI+LKVFPASKEEK+AFFYYRDGMSAQSEGEYAEALENYYEALQ+EEDP DRS
Sbjct:    1 MARSQKNDNFIDKTFTVMADILLKVFPASKEEKEAFFYYRDGMSAQSEGEYAEALENYYEALQIEEDPKDRS 72
[Close]
BLAST of mRNA_H-paniculata_contig69847.14926.1 vs. uniprot
Match: A0A1Z1M4W4_OSMFI (Photosystem I assembly protein Ycf3 n=1 Tax=Osmundaria fimbriata TaxID=228265 RepID=A0A1Z1M4W4_OSMFI)

HSP 1 Score: 133 bits (335), Expect = 1.120e-37
Identity = 64/72 (88.89%), Postives = 69/72 (95.83%), Query Frame = 0 
Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS 72
            M RSQ+NDNFIDKTFT++ADIILK+ P SKEEKQAF+YYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS
Sbjct:    1 MPRSQKNDNFIDKTFTVLADIILKILPTSKEEKQAFYYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS 72
[Close]
BLAST of mRNA_H-paniculata_contig69847.14926.1 vs. uniprot
Match: A0A516ZA68_9STRA (Photosystem I assembly protein Ycf3 n=3 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZA68_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.320e-37
Identity = 64/72 (88.89%), Postives = 70/72 (97.22%), Query Frame = 0 
Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS 72
            M R Q+NDNFIDKTFTI+ADI+LKVFPASK+EKQAFFYYR+GMSAQSEGEYAEALENYYEALQ+EEDPYDRS
Sbjct:    1 MGRIQKNDNFIDKTFTIIADILLKVFPASKQEKQAFFYYREGMSAQSEGEYAEALENYYEALQIEEDPYDRS 72
[Close]
BLAST of mRNA_H-paniculata_contig69847.14926.1 vs. uniprot
Match: B7T1Q9_VAULI (Photosystem I assembly protein Ycf3 n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1Q9_VAULI)

HSP 1 Score: 132 bits (331), Expect = 4.810e-37
Identity = 64/72 (88.89%), Postives = 70/72 (97.22%), Query Frame = 0 
Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS 72
            M + QRNDNFIDKTFTIMADI+LKVFPASKEEKQAFFYY+DGMSAQS+GEYAEALE+YYEALQ+EEDPYDRS
Sbjct:    1 MVKIQRNDNFIDKTFTIMADILLKVFPASKEEKQAFFYYKDGMSAQSDGEYAEALEDYYEALQMEEDPYDRS 72
[Close]
BLAST of mRNA_H-paniculata_contig69847.14926.1 vs. uniprot
Match: A0A1Z1MJD8_9FLOR (Photosystem I assembly protein Ycf3 n=3 Tax=Rhodomelaceae TaxID=2803 RepID=A0A1Z1MJD8_9FLOR)

HSP 1 Score: 130 bits (328), Expect = 1.290e-36
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = 0 
Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS 72
            M R Q+NDNFIDKTFT++ADI+LK+ P SKEEKQAF+YYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS
Sbjct:    1 MPRLQKNDNFIDKTFTVLADIVLKILPTSKEEKQAFYYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS 72
[Close]
BLAST of mRNA_H-paniculata_contig69847.14926.1 vs. uniprot
Match: A0A1Z1MSQ8_9FLOR (Photosystem I assembly protein Ycf3 n=5 Tax=Rhodomelaceae TaxID=2803 RepID=A0A1Z1MSQ8_9FLOR)

HSP 1 Score: 130 bits (327), Expect = 1.830e-36
Identity = 63/72 (87.50%), Postives = 68/72 (94.44%), Query Frame = 0 
Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS 72
            M R Q+NDNFIDKTFTI+ADI+LKV P SKEEK+AF+YYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS
Sbjct:    1 MPRIQKNDNFIDKTFTILADIVLKVLPTSKEEKEAFYYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS 72
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig69847.14926.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1L2F1V5_9PHAE3.950e-4095.83Photosystem I assembly protein Ycf3 n=58 Tax=Phaeo... [more]
B2XT84_HETAK3.410e-3992.96Photosystem I assembly protein Ycf3 n=2 Tax=Hetero... [more]
A0A023HBL3_9STRA1.460e-3891.67Photosystem I assembly protein Ycf3 n=10 Tax=Ochro... [more]
J9QSV9_9STRA2.860e-3888.89Photosystem I assembly protein Ycf3 n=3 Tax=Pelago... [more]
A0A7S6U9V8_9STRA3.500e-3890.28Photosystem I assembly protein Ycf3 n=1 Tax=Schizo... [more]
A0A1Z1M4W4_OSMFI1.120e-3788.89Photosystem I assembly protein Ycf3 n=1 Tax=Osmund... [more]
A0A516ZA68_9STRA2.320e-3788.89Photosystem I assembly protein Ycf3 n=3 Tax=Dictyo... [more]
B7T1Q9_VAULI4.810e-3788.89Photosystem I assembly protein Ycf3 n=1 Tax=Vauche... [more]
A0A1Z1MJD8_9FLOR1.290e-3686.11Photosystem I assembly protein Ycf3 n=3 Tax=Rhodom... [more]
A0A1Z1MSQ8_9FLOR1.830e-3687.50Photosystem I assembly protein Ycf3 n=5 Tax=Rhodom... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 35..68
e-value: 0.012
score: 24.8
coord: 72..104
e-value: 0.0012
score: 28.2
IPR019734Tetratricopeptide repeatPFAMPF13176TPR_7coord: 46..71
e-value: 0.035
score: 14.2
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 72..104
score: 11.033
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 35..68
score: 9.853
IPR001440Tetratricopeptide repeat 1PFAMPF00515TPR_1coord: 74..104
e-value: 2.6E-11
score: 42.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 16..104
e-value: 2.2E-15
score: 58.7
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 16..104
NoneNo IPR availablePANTHERPTHR26312FAMILY NOT NAMEDcoord: 1..104
NoneNo IPR availablePANTHERPTHR26312:SF145PHOTOSYSTEM I ASSEMBLY PROTEIN YCF3coord: 1..104
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 35..104
score: 21.084

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig69847contigH-paniculata_contig69847:1..312 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig69847.14926.1mRNA_H-paniculata_contig69847.14926.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig69847 1..312 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig69847.14926.1 ID=prot_H-paniculata_contig69847.14926.1|Name=mRNA_H-paniculata_contig69847.14926.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGE
YAEALENYYEALQLEEDPYDRSFILYNIGLIYSSNGEYLKALEYYHQALE
LNPN
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR001440TPR_1
IPR011990TPR-like_helical_dom_sf
IPR013026TPR-contain_dom