mRNA_H-paniculata_contig69847.14926.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig69847.14926.1
Unique Name	mRNA_H-paniculata_contig69847.14926.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig69847.14926.1 vs. uniprot
Match: A0A1L2F1V5_9PHAE (Photosystem I assembly protein Ycf3 n=58 Tax=Phaeophyceae TaxID=2870 RepID=A0A1L2F1V5_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 3.950e-40
Identity = 69/72 (95.83%), Postives = 72/72 (100.00%), Query Frame = 1

Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS 216
            MSRSQRNDNFIDKTFTI+ADIILKVFPASKEEK+AFFYY+DGMSAQSEGEYAEALENYYEALQLEEDPYDRS
Sbjct:    1 MSRSQRNDNFIDKTFTIVADIILKVFPASKEEKEAFFYYKDGMSAQSEGEYAEALENYYEALQLEEDPYDRS 72

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BLAST of mRNA_H-paniculata_contig69847.14926.1 vs. uniprot
Match: B2XT84_HETAK (Photosystem I assembly protein Ycf3 n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XT84_HETAK)

HSP 1 Score: 137 bits (345), Expect = 3.410e-39
Identity = 66/71 (92.96%), Postives = 70/71 (98.59%), Query Frame = 1

Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDR 213
            M RSQRNDNFIDKTFT+MADI+LKVFPASKEEK+AFFYYRDGMSAQSEGEYAEALENYYEALQ+EEDPYDR
Sbjct:    1 MGRSQRNDNFIDKTFTVMADILLKVFPASKEEKEAFFYYRDGMSAQSEGEYAEALENYYEALQIEEDPYDR 71

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BLAST of mRNA_H-paniculata_contig69847.14926.1 vs. uniprot
Match: A0A023HBL3_9STRA (Photosystem I assembly protein Ycf3 n=10 Tax=Ochrophyta TaxID=2696291 RepID=A0A023HBL3_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.460e-38
Identity = 66/72 (91.67%), Postives = 70/72 (97.22%), Query Frame = 1

Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS 216
            M RSQRNDNFIDKTFTI+ADI+LK+ PASK+EKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS
Sbjct:    1 MGRSQRNDNFIDKTFTIVADILLKILPASKQEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS 72

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BLAST of mRNA_H-paniculata_contig69847.14926.1 vs. uniprot
Match: J9QSV9_9STRA (Photosystem I assembly protein Ycf3 n=3 Tax=Pelagomonadales TaxID=54409 RepID=J9QSV9_9STRA)

HSP 1 Score: 135 bits (339), Expect = 2.860e-38
Identity = 64/72 (88.89%), Postives = 71/72 (98.61%), Query Frame = 1

Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS 216
            M RSQRNDNFIDKTFT++ADI+LKVFPASK+EKQAFFYYRDGMSAQ+EG+YAEALENYYEALQ+EEDPYDRS
Sbjct:    1 MGRSQRNDNFIDKTFTLLADILLKVFPASKQEKQAFFYYRDGMSAQAEGDYAEALENYYEALQIEEDPYDRS 72

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BLAST of mRNA_H-paniculata_contig69847.14926.1 vs. uniprot
Match: A0A7S6U9V8_9STRA (Photosystem I assembly protein Ycf3 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9V8_9STRA)

HSP 1 Score: 134 bits (338), Expect = 3.500e-38
Identity = 65/72 (90.28%), Postives = 71/72 (98.61%), Query Frame = 1

Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS 216
            M+RSQ+NDNFIDKTFT+MADI+LKVFPASKEEK+AFFYYRDGMSAQSEGEYAEALENYYEALQ+EEDP DRS
Sbjct:    1 MARSQKNDNFIDKTFTVMADILLKVFPASKEEKEAFFYYRDGMSAQSEGEYAEALENYYEALQIEEDPKDRS 72

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BLAST of mRNA_H-paniculata_contig69847.14926.1 vs. uniprot
Match: A0A1Z1M4W4_OSMFI (Photosystem I assembly protein Ycf3 n=1 Tax=Osmundaria fimbriata TaxID=228265 RepID=A0A1Z1M4W4_OSMFI)

HSP 1 Score: 133 bits (335), Expect = 1.120e-37
Identity = 64/72 (88.89%), Postives = 69/72 (95.83%), Query Frame = 1

Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS 216
            M RSQ+NDNFIDKTFT++ADIILK+ P SKEEKQAF+YYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS
Sbjct:    1 MPRSQKNDNFIDKTFTVLADIILKILPTSKEEKQAFYYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS 72

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BLAST of mRNA_H-paniculata_contig69847.14926.1 vs. uniprot
Match: A0A516ZA68_9STRA (Photosystem I assembly protein Ycf3 n=3 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZA68_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.320e-37
Identity = 64/72 (88.89%), Postives = 70/72 (97.22%), Query Frame = 1

Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS 216
            M R Q+NDNFIDKTFTI+ADI+LKVFPASK+EKQAFFYYR+GMSAQSEGEYAEALENYYEALQ+EEDPYDRS
Sbjct:    1 MGRIQKNDNFIDKTFTIIADILLKVFPASKQEKQAFFYYREGMSAQSEGEYAEALENYYEALQIEEDPYDRS 72

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BLAST of mRNA_H-paniculata_contig69847.14926.1 vs. uniprot
Match: B7T1Q9_VAULI (Photosystem I assembly protein Ycf3 n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1Q9_VAULI)

HSP 1 Score: 132 bits (331), Expect = 4.810e-37
Identity = 64/72 (88.89%), Postives = 70/72 (97.22%), Query Frame = 1

Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS 216
            M + QRNDNFIDKTFTIMADI+LKVFPASKEEKQAFFYY+DGMSAQS+GEYAEALE+YYEALQ+EEDPYDRS
Sbjct:    1 MVKIQRNDNFIDKTFTIMADILLKVFPASKEEKQAFFYYKDGMSAQSDGEYAEALEDYYEALQMEEDPYDRS 72

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BLAST of mRNA_H-paniculata_contig69847.14926.1 vs. uniprot
Match: A0A1Z1MJD8_9FLOR (Photosystem I assembly protein Ycf3 n=3 Tax=Rhodomelaceae TaxID=2803 RepID=A0A1Z1MJD8_9FLOR)

HSP 1 Score: 130 bits (328), Expect = 1.290e-36
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = 1

Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS 216
            M R Q+NDNFIDKTFT++ADI+LK+ P SKEEKQAF+YYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS
Sbjct:    1 MPRLQKNDNFIDKTFTVLADIVLKILPTSKEEKQAFYYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS 72

[Close]

BLAST of mRNA_H-paniculata_contig69847.14926.1 vs. uniprot
Match: A0A1Z1MSQ8_9FLOR (Photosystem I assembly protein Ycf3 n=5 Tax=Rhodomelaceae TaxID=2803 RepID=A0A1Z1MSQ8_9FLOR)

HSP 1 Score: 130 bits (327), Expect = 1.830e-36
Identity = 63/72 (87.50%), Postives = 68/72 (94.44%), Query Frame = 1

Query:    1 MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS 216
            M R Q+NDNFIDKTFTI+ADI+LKV P SKEEK+AF+YYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS
Sbjct:    1 MPRIQKNDNFIDKTFTILADIVLKVLPTSKEEKEAFYYYRDGMSAQSEGEYAEALENYYEALQLEEDPYDRS 72

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig69847.14926.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig69847.14926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A1L2F1V5_9PHAE	3.950e-40	95.83	Photosystem I assembly protein Ycf3 n=58 Tax=Phaeo...	[more]
B2XT84_HETAK	3.410e-39	92.96	Photosystem I assembly protein Ycf3 n=2 Tax=Hetero...	[more]
A0A023HBL3_9STRA	1.460e-38	91.67	Photosystem I assembly protein Ycf3 n=10 Tax=Ochro...	[more]
J9QSV9_9STRA	2.860e-38	88.89	Photosystem I assembly protein Ycf3 n=3 Tax=Pelago...	[more]
A0A7S6U9V8_9STRA	3.500e-38	90.28	Photosystem I assembly protein Ycf3 n=1 Tax=Schizo...	[more]
A0A1Z1M4W4_OSMFI	1.120e-37	88.89	Photosystem I assembly protein Ycf3 n=1 Tax=Osmund...	[more]
A0A516ZA68_9STRA	2.320e-37	88.89	Photosystem I assembly protein Ycf3 n=3 Tax=Dictyo...	[more]
B7T1Q9_VAULI	4.810e-37	88.89	Photosystem I assembly protein Ycf3 n=1 Tax=Vauche...	[more]
A0A1Z1MJD8_9FLOR	1.290e-36	86.11	Photosystem I assembly protein Ycf3 n=3 Tax=Rhodom...	[more]
A0A1Z1MSQ8_9FLOR	1.830e-36	87.50	Photosystem I assembly protein Ycf3 n=5 Tax=Rhodom...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig69847	contig	H-paniculata_contig69847:1..312 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	143.3
Seed ortholog evalue	6.5e-32
Seed eggNOG ortholog	2880.D1J7B5
Preferred name	FKBPL
KEGG ko	ko:K20097
Hectar predicted targeting category	other localisation
GOs	GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006091,GO:0008150,GO:0008152,GO:0009314,GO:0009579,GO:0009628,GO:0009987,GO:0015979,GO:0016043,GO:0019684,GO:0022603,GO:0022607,GO:0031647,GO:0034622,GO:0043933,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0045765,GO:0048564,GO:0050789,GO:0050793,GO:0050821,GO:0050896,GO:0051239,GO:0060688,GO:0065003,GO:0065007,GO:0065008,GO:0071840,GO:1901342,GO:1905330,GO:1905553,GO:2000026
EggNOG free text desc.	cellular component assembly
EggNOG OGs	COG0457@1,KOG1124@2759
COG Functional cat.	O
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03110
Exons	1
Model size	312
Cds size	312
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930839.8840504-CDS-H-paniculata_contig69847:0..312	1622930839.8840504-CDS-H-paniculata_contig69847:0..312	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig69847 1..312 -
1691481475.9394636-CDS-H-paniculata_contig69847:0..312	1691481475.9394636-CDS-H-paniculata_contig69847:0..312	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig69847 1..312 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig69847.14926.1	prot_H-paniculata_contig69847.14926.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig69847 1..312 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig69847:1..312-
coding sequence from alignment at H-paniculata_contig69847:1..312-

protein sequence of mRNA_H-paniculata_contig69847.14926.1

>prot_H-paniculata_contig69847.14926.1 ID=prot_H-paniculata_contig69847.14926.1|Name=mRNA_H-paniculata_contig69847.14926.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MSRSQRNDNFIDKTFTIMADIILKVFPASKEEKQAFFYYRDGMSAQSEGE
YAEALENYYEALQLEEDPYDRSFILYNIGLIYSSNGEYLKALEYYHQALE
LNPN

mRNA from alignment at H-paniculata_contig69847:1..312-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig69847.14926.1 ID=mRNA_H-paniculata_contig69847.14926.1|Name=mRNA_H-paniculata_contig69847.14926.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=312bp|location=Sequence derived from alignment at H-paniculata_contig69847:1..312- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTCGTTCACAAAGAAATGATAATTTCATTGATAAAACCTTTACAAT
TATGGCCGACATTATTTTAAAGGTTTTTCCAGCAAGTAAAGAAGAAAAAC
AAGCATTCTTCTATTACAGGGATGGTATGTCAGCACAATCTGAAGGTGAG
TATGCAGAAGCGTTAGAAAATTACTATGAAGCTTTACAGCTTGAAGAAGA
CCCTTATGACCGGAGTTTTATTTTATATAATATTGGTTTAATTTATTCCA
GCAACGGTGAATATTTAAAAGCCCTAGAATACTATCACCAAGCATTAGAA
TTAAACCCAAAC

Coding sequence (CDS) from alignment at H-paniculata_contig69847:1..312-

>mRNA_H-paniculata_contig69847.14926.1 ID=mRNA_H-paniculata_contig69847.14926.1|Name=mRNA_H-paniculata_contig69847.14926.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig69847:1..312- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTCGTTCACAAAGAAATGATAATTTCATTGATAAAACCTTTACAAT
TATGGCCGACATTATTTTAAAGGTTTTTCCAGCAAGTAAAGAAGAAAAAC
AAGCATTCTTCTATTACAGGGATGGTATGTCAGCACAATCTGAAGGTGAG
TATGCAGAAGCGTTAGAAAATTACTATGAAGCTTTACAGCTTGAAGAAGA
CCCTTATGACCGGAGTTTTATTTTATATAATATTGGTTTAATTTATTCCA
GCAACGGTGAATATTTAAAAGCCCTAGAATACTATCACCAAGCATTAGAA
TTAAACCCAAACATGAGTCGTTCACAAAGAAATGATAATTTCATTGATAA
AACCTTTACAATTATGGCCGACATTATTTTAAAGGTTTTTCCAGCAAGTA
AAGAAGAAAAACAAGCATTCTTCTATTACAGGGATGGTATGTCAGCACAA
TCTGAAGGTGAGTATGCAGAAGCGTTAGAAAATTACTATGAAGCTTTACA
GCTTGAAGAAGACCCTTATGACCGGAGTTTTATTTTATATAATATTGGTT
TAATTTATTCCAGCAACGGTGAATATTTAAAAGCCCTAGAATACTATCAC
CAAGCATTAGAATTAAACCCAAAC