mRNA_H-paniculata_contig6983.14925.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig6983.14925.1 vs. uniprot
Match: D7G086_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G086_ECTSI) HSP 1 Score: 261 bits (666), Expect = 2.330e-67 Identity = 241/719 (33.52%), Postives = 310/719 (43.12%), Query Frame = 1
Query: 1 QASDPRDHLPPVIVLDGLLGRVRDGKEVPAAVEAVLRWCWTITGGRRLAHVVLTAPHSMTVDGSLVRVKAFLNDGRLAPGMMHVVGLRAPDRGVAEARFKARLAPSATSWTMGEARDRGSQNDRGVRLAMELVHGEEFGVAEEANEVIRR----------LSAKRVSSLDEALEGIAYESWRRAAAAV-------------TAATVATPP--SDTPLISS-------------IMGRKRGSRVQQASQAKEHQNSNRI-----------PAGK-----VNVVSDTPDTLSQQSTGENGGSVSAIEQRPGFV--VDDYLPLDPTDYLPEEGSQSTTTRGEDRARSTVGSRHRGNTVSHAAVVDGNNDGXXXXXXXDYVVLSPMTPLEQ----------------------------------------------------------LLRLMNVLADGGKVTVADAVAGFGGDAARLGRLLELGVLRLRPRTVCA--------KSTADGGFGAGVTGGL---LHGTGYGT------RLLGLSAVLPEADVTFEVGPATPIVEGVFAILRGCKGFEEQALVRSTAFMS--GTYGVSG---------------------RTEELRQPREAFMTTLLERAFAVDSDGEKGVEGEPV----------------------------GLNGLSTRRLQSAMAAAGCMLTRLEIEYEIHAAESQEGEL 1611
QA DPR+HLPPVIV+DGLLGR+R+G++VPAAVEAVLRWCWTITGGRRLAHVVL AP S+ VDGSLVRVK FLNDGRLAPGMM V+ L APD V E RF++R A + T G A G + +R V L MELVH E VA+EANE++ R LSA R++ L+E+L+G A E+WRR AAV T A V TP S L S+ G R Q +A+ R PAG V + D + + G G A + PG +P D + +++ TR E + + S AA + + LSP E+ L+ L+ LADGGKV+V AVA GD L RLL+LGVLRL P+T + +ST G A + L L G+ R + VL EA F+VG ATP++ GVF+IL+GC+G EEQA+ + F+S G + +EE + REA M L+ RA + + TRRLQ+A+AA GCM T +EI E+ AA+S G L
Sbjct: 139 QADDPRNHLPPVIVMDGLLGRIREGEDVPAAVEAVLRWCWTITGGRRLAHVVLIAPQSLAVDGSLVRVKGFLNDGRLAPGMMRVIALNAPDSSVIERRFRSRFAAAPQQPTQGGA---GEEGERAVTLCMELVHREGCSVADEANEILTRTDFSDDSPDKLSAARLA-LEESLDGFALEAWRRVGAAVESTAAIAPRGFAGTDAVVGTPGAVSSAALASNQRAPVPPSTSAGGSSGATSAKRNTQEGRAESGVTRTRTSXXXXXXXXXXPAGGGEEGGVQTANHDVDDGAAVAAGAGPGDDKAESEVPGLSSPAAAVVPKDGKRGHADSSAEAEATREELQQQKQQESLQDEGKEPPAADITPDEPASLEASELSSF-LSPRARGEEEAVYWEEAESLSAPVVAEEPSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGRLVELLGELADGGKVSVHHAVAALDGDGKALARLLDLGVLRLCPQTRSSSVGAGRIDRSTVRAGGTASILSSLSLSLPGSSLDASHSRPGRGSTSADVLAEAGAAFQVGAATPLMAGVFSILKGCQGVEEQAIAGAIHFLSRGGNENAAXXXXXXXXXXXXXXXXXXXFEEESEEWQAHREASMAMLVHRAMTSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSRRSSTSAYRTRRLQTALAAVGCMTTWMEIFKELSAADSPGGML 852
BLAST of mRNA_H-paniculata_contig6983.14925.1 vs. uniprot
Match: A0A6H5JKL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKL7_9PHAE) HSP 1 Score: 258 bits (659), Expect = 1.780e-66 Identity = 219/576 (38.02%), Postives = 275/576 (47.74%), Query Frame = 1
Query: 1 QASDPRDHLPPVIVLDGLLGRVRDGKEVPAAVEAVLRWCWTITGGRRLAHVVLTAPHSMTVDGSLVRVKAFLNDGRLAPGMMHVVGLRAPDRGVAEARFKARLAPSATSWTMGEARDRGSQNDRGVRLAMELVHGEEFGVAEEANEVIRR----------LSAKRVSSLDEALEGIAYESWRRAAAAV-------------TAATVATPP--SDTPLISSIMG-----RKRGSRVQQASQAKEHQNSNRIPAGKV-----------------------------------------------NVVSDTPDTLSQQST-----GENGGSVSAIE----------------QRPGF-------VVDDYLPLDPTDYLPEEGSQSTTTRGEDRARSTVGSRHRGNTVSHAAVVDGNNDGXXXXXXXDYVVLSPMTPLEQLLRLMNVLADGGKVTVADAVAGFGGDAARLGRLLELGVLRLRPRT----VCAKSTADGGFGAGVTGGLLHGTGYGTRLLGLSA-------------VLPEADVTFEVGPATPIVEGVFAILRGCKGFEEQALVRSTAFMS 1362
QA DPR+HLPPVIV+DGLLG +R+G++VPAAVEAVLRWCWTITGGRRLAHVVL AP S+ VDGSLVRVK FLNDGRLAPGMM V+ L APD V E RF++R + + G G + +R V L MELVH E VAEEANE++ R LSA R++ L+E+LEG A E+WRR AAV AA V TP S L S+ G R A+ AK + R +G S+ P S + G++G + S++E QR G D+ L+ T+ P G T E +A S + S + XXXXXXX P TP+ +L+ L+ LADGGKV+V AVA GD L RLL+LGVLRL P+T V A AG T +L + L A VL EA F+VG ATP++ GVF+IL+GC+G EEQA+ + F+S
Sbjct: 153 QAEDPRNHLPPVIVMDGLLGHIREGEDVPAAVEAVLRWCWTITGGRRLAHVVLIAPQSLAVDGSLVRVKGFLNDGRLAPGMMRVIALNAPDSSVIERRFRSRFVVAPQQRSQGGG---GEEGERAVTLCMELVHREGCAVAEEANEILTRTDFSDDSPSKLSAARLA-LEESLEGFALEAWRRVGAAVESTAAIAPRGFAGAAAVVGTPGAVSSAALASNQRAPVPPSMSTGGRTG-ATYAKRNTQEGRAESGATWTRTSPGSGSEGDGDPAGGGEEGGVQSANHGFDDGAAVAAGAGPGDDKAESEVPGLSSPAAAVGPNDGKSGHADSSVEVEATPQELQQKQQESLQREGKEPPAADDTADEPAILEATELSPSSGGGEGTVYSE-KAESLSAPVVAEESSSSYSAXXXXXXXXXXXXXXXXNPGDPATPVGRLVELLGELADGGKVSVHHAVAALDGDGKALARLLDLGVLRLCPQTRSSSVGAGRIDRSTVRAGGTSSILSSLALSLPVSSLDASHSHPRTGSTSPDVLAEAGAAFQVGAATPLMAGVFSILKGCQGAEEQAIACAIHFLS 722 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6983.14925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6983.14925.1 >prot_H-paniculata_contig6983.14925.1 ID=prot_H-paniculata_contig6983.14925.1|Name=mRNA_H-paniculata_contig6983.14925.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=818bp MTVDGSLVRVKAFLNDGRLAPGMMHVVGLRAPDRGVAEARFKARLAPSATback to top mRNA from alignment at H-paniculata_contig6983:624..10223+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig6983.14925.1 ID=mRNA_H-paniculata_contig6983.14925.1|Name=mRNA_H-paniculata_contig6983.14925.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9600bp|location=Sequence derived from alignment at H-paniculata_contig6983:624..10223+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig6983:624..10223+ >mRNA_H-paniculata_contig6983.14925.1 ID=mRNA_H-paniculata_contig6983.14925.1|Name=mRNA_H-paniculata_contig6983.14925.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4908bp|location=Sequence derived from alignment at H-paniculata_contig6983:624..10223+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |