mRNA_H-paniculata_contig6980.14922.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6980.14922.1
Unique NamemRNA_H-paniculata_contig6980.14922.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6980.14922.1 vs. uniprot
Match: D7G639_ECTSI (S10_plectin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G639_ECTSI)

HSP 1 Score: 271 bits (693), Expect = 2.160e-85
Identity = 146/162 (90.12%), Postives = 150/162 (92.59%), Query Frame = 1 
Query:    4 FIQKKNRVAVYTYLFKEGVLVAKKDFFKAKHDAIEDVPNLEVLCLMKSMKSRGLVRETFNWQYFYWYLTVEGIEYLREYLHLPEEIVPATLKKSAPRAARPGPAPGKWDREGGRG-YGG--DRFGDKKMGPGGDFNPEFQRGGGGQDGYRRGGGFGRGGGGE 480
            FI KKNR+AVY+YLFKEGVLVAKKDFFKAKHD IEDVPNLEVL LMKSMKSRGLVRETFNWQYFYWYLTVEGIEYLREYLHLPEEIVPATLKKSA R ARPGPAPG  DR+GGRG YGG  DRFGDKKMGPGGDFNPEFQRGG  QDGYRRGGGFGRGGGG+
Sbjct:    2 FILKKNRLAVYSYLFKEGVLVAKKDFFKAKHDEIEDVPNLEVLALMKSMKSRGLVRETFNWQYFYWYLTVEGIEYLREYLHLPEEIVPATLKKSASRPARPGPAPGG-DRDGGRGGYGGXGDRFGDKKMGPGGDFNPEFQRGG--QDGYRRGGGFGRGGGGD 160
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BLAST of mRNA_H-paniculata_contig6980.14922.1 vs. uniprot
Match: A0A835YL06_9STRA (Plectin/S10 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL06_9STRA)

HSP 1 Score: 201 bits (512), Expect = 1.150e-58
Identity = 109/157 (69.43%), Postives = 122/157 (77.71%), Query Frame = 1 
Query:    4 FIQKKNRVAVYTYLFKEGVLVAKKDFFKAKHDAIEDVPNLEVLCLMKSMKSRGLVRETFNWQYFYWYLTVEGIEYLREYLHLPEEIVPATLKKSAPRAARPGPAPGKWDREGGRGYGGDRFGDKKMGPGGDFNPEFQRGGGGQDGYRRGGGFGRGGG 474
            FI KKNR+ VY YLF+EGVLVAKKDF++  H+ I DVPNLEVLCLMKSM+SR LVRETFNWQ++Y+YLT  GIEYLREYLHLPEE +PATLKK A R AR GP PG+          G R+GDKKMGPGGDF PEFQ+     DGYRR G FGRGGG
Sbjct:    2 FILKKNRILVYQYLFQEGVLVAKKDFYQPAHEDIPDVPNLEVLCLMKSMRSRQLVRETFNWQHYYYYLTAAGIEYLREYLHLPEETIPATLKKPAARPARAGPVPGE--------SAGGRYGDKKMGPGGDFQPEFQQSR--DDGYRRSG-FGRGGG 147
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BLAST of mRNA_H-paniculata_contig6980.14922.1 vs. uniprot
Match: A0A8D1CTJ2_PIG (S10_plectin domain-containing protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D1CTJ2_PIG)

HSP 1 Score: 199 bits (507), Expect = 7.830e-58
Identity = 103/121 (85.12%), Postives = 107/121 (88.43%), Query Frame = 1 
Query:    4 FIQKKNRVAVYTYLFKEGVLVAKKDFFKAKHDAIEDVPNLEVLCLMKSMKSRGLVRETFNWQYFYWYLTVEGIEYLREYLHLPEEIVPATLKKSAPRAARPGPAPG-KWDREGGRGYGGDR 363
            FIQKKNR+AVY+YLFKEGVLVAKKDFFK KHD IEDVPNLEVL LMKSMKSRGLVRETFNWQYFYWYLT EGIEYLREYLHLPEEIVPATLKKSA R ARPGPAPG + +      YGGDR
Sbjct:    2 FIQKKNRLAVYSYLFKEGVLVAKKDFFKPKHDKIEDVPNLEVLALMKSMKSRGLVRETFNWQYFYWYLTAEGIEYLREYLHLPEEIVPATLKKSASRPARPGPAPGGEREXXXXXXYGGDR 122
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BLAST of mRNA_H-paniculata_contig6980.14922.1 vs. uniprot
Match: A0A7S2XYZ3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYZ3_9STRA)

HSP 1 Score: 192 bits (489), Expect = 4.150e-55
Identity = 110/153 (71.90%), Postives = 120/153 (78.43%), Query Frame = 1 
Query:    4 FIQKKNRVAVYTYLFKEGVLVAKKDFFKAKHDAIEDVPNLEVLCLMKSMKSRGLVRETFNWQYFYWYLTVEGIEYLREYLHLPEEIVPATLKKSAPRAARPGPAPGKWDREGGRGYGGDRFGDK--KMGPGGDFNPEFQRG--GGGQDGYRRG 450
            F+ K NR+AVY+YLFKEGVLV KKD FK KHD I DVPNLEV+ LMKS KSRGLVRETFNWQY+Y+YLT EGIEYLREYLHLP E+VPATLKK AP+ ARPGP PG     G RG    RFGDK  +MGP GDFNPE+  G   GGQDGYR G
Sbjct:    2 FVTKTNRLAVYSYLFKEGVLVCKKDNFKPKHDEI-DVPNLEVMNLMKSFKSRGLVRETFNWQYYYYYLTNEGIEYLREYLHLPAEVVPATLKKPAPKPARPGPGPG-----GERGE--SRFGDKGKRMGPAGDFNPEYAGGFGRGGQDGYRGG 146
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BLAST of mRNA_H-paniculata_contig6980.14922.1 vs. uniprot
Match: A0A2D4BV11_PYTIN (40S ribosomal protein S10 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BV11_PYTIN)

HSP 1 Score: 179 bits (454), Expect = 2.810e-50
Identity = 99/148 (66.89%), Postives = 116/148 (78.38%), Query Frame = 1 
Query:    7 IQKKNRVAVYTYLFKEGVLVAKKDFFKAKHDAIEDVPNLEVLCLMKSMKSRGLVRETFNWQYFYWYLTVEGIEYLREYLHLPEEIVPATLKKSAPRAARPGPAPGKWDREGGRGYGGDRFG-DKKMGPGGDFNPEFQRGGGGQDGYRR 447
            + KKNR+AVY+YLFKEGV+VA+KD+ K KH+A+ DVPNL+V+ L+ S+KSRG V+ETFNWQ++YWYLT EGIEYLR YLHLP EIVPATLKK A R  RP  APG        GYG  RF  DK +GP GDFNPEF+RGG  QDGYRR
Sbjct:    3 VPKKNRIAVYSYLFKEGVMVAQKDYAKPKHEAV-DVPNLQVIKLLTSLKSRGYVKETFNWQWYYWYLTNEGIEYLRAYLHLPAEIVPATLKKQAARPQRP-QAPGA-------GYGRGRFDKDKGVGPAGDFNPEFRRGG--QDGYRR 139
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BLAST of mRNA_H-paniculata_contig6980.14922.1 vs. uniprot
Match: A0A8K1FEH4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FEH4_PYTOL)

HSP 1 Score: 179 bits (453), Expect = 4.060e-50
Identity = 98/149 (65.77%), Postives = 116/149 (77.85%), Query Frame = 1 
Query:    7 IQKKNRVAVYTYLFKEGVLVAKKDFFKAKHDAIEDVPNLEVLCLMKSMKSRGLVRETFNWQYFYWYLTVEGIEYLREYLHLPEEIVPATLKKSAPRAARP-GPAPGKWDREGGRGYGGDRFG-DKKMGPGGDFNPEFQRGGGGQDGYRR 447
            + KKNR+AVY+YLFKEGV+VA+KDF K  H+++ DVPNL+V+ L+ S+KSRG V+ETFNWQ++YWYLT EGIEYLR YLHLP EIVPATLKK A R  RP  PAPG        G+G  RF  DK +GP GDFNPEF+RGG  QDGYRR
Sbjct:    3 VPKKNRIAVYSYLFKEGVMVAQKDFAKPTHESV-DVPNLQVIKLLTSLKSRGYVKETFNWQWYYWYLTNEGIEYLRAYLHLPSEIVPATLKKQAARPTRPQAPAPG--------GFGRGRFDKDKGVGPSGDFNPEFRRGG--QDGYRR 140
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BLAST of mRNA_H-paniculata_contig6980.14922.1 vs. uniprot
Match: H3G850_PHYRM (S10_plectin domain-containing protein n=25 Tax=Oomycota TaxID=4762 RepID=H3G850_PHYRM)

HSP 1 Score: 176 bits (446), Expect = 4.230e-49
Identity = 98/149 (65.77%), Postives = 115/149 (77.18%), Query Frame = 1 
Query:    7 IQKKNRVAVYTYLFKEGVLVAKKDFFKAKHDAIEDVPNLEVLCLMKSMKSRGLVRETFNWQYFYWYLTVEGIEYLREYLHLPEEIVPATLKKSAPRAARP-GPAPGKWDREGGRGYGGDRFGDKK-MGPGGDFNPEFQRGGGGQDGYRR 447
            + K NR+AVY+YLFKEGV+VAKKDF   KH+A+ DVPNL+V+ LM+S+KSRG V+ETFNWQ+FYWYLT EGIEYLR YLHLP EIVPATLKK A R  RP  P+ G        G+G  RF  +K +GP GDFNPEF+RGG  QDGYRR
Sbjct:    3 VPKTNRIAVYSYLFKEGVMVAKKDFSLPKHEAV-DVPNLQVIKLMQSLKSRGYVKETFNWQWFYWYLTNEGIEYLRSYLHLPAEIVPATLKKQAARPTRPQAPSAG--------GFGRGRFDKEKGVGPSGDFNPEFRRGG--QDGYRR 140
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BLAST of mRNA_H-paniculata_contig6980.14922.1 vs. uniprot
Match: A0A7S2RBH2_9STRA (Hypothetical protein n=3 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RBH2_9STRA)

HSP 1 Score: 171 bits (432), Expect = 6.650e-47
Identity = 101/163 (61.96%), Postives = 117/163 (71.78%), Query Frame = 1 
Query:    7 IQKKNRVAVYTYLFKEGVLVAKKDFFKAKHDAIEDVPNLEVLCLMKSMKSRGLVRETFNWQYFYWYLTVEGIEYLREYLHLPEEIVPATLKKSAPRAARPGPAPGKWDREGGRGYGGDRFGD--KKMGPGGDFNPEFQ-------RGGGGQDGYRRGGGFGRG 468
            + KKNRVAVY++LFKEGV+VA KD+ KAKH++I DV NLEV+ LM S+KSRG VRETF+WQ+FYW+LT EG++YLREYLHLPE IVP T KK    AARP          G R YGG+  G   K  G G DFNP+FQ       RG GGQDGYRR GGFGRG
Sbjct:    3 LPKKNRVAVYSHLFKEGVMVAHKDYTKAKHESI-DVSNLEVIHLMTSLKSRGYVRETFSWQWFYWFLTEEGVKYLREYLHLPEGIVPQTHKKQQVTAARP---------SGNRSYGGEGRGGYGKDGGAGRDFNPQFQGERGGFGRGSGGQDGYRREGGFGRG 155
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BLAST of mRNA_H-paniculata_contig6980.14922.1 vs. uniprot
Match: A0A024TKD5_9STRA (S10_plectin domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TKD5_9STRA)

HSP 1 Score: 170 bits (430), Expect = 8.870e-47
Identity = 95/148 (64.19%), Postives = 110/148 (74.32%), Query Frame = 1 
Query:    7 IQKKNRVAVYTYLFKEGVLVAKKDFFKAKHDAIEDVPNLEVLCLMKSMKSRGLVRETFNWQYFYWYLTVEGIEYLREYLHLPEEIVPATLKKSAPRAARP-GPAPGKWDREGGRGYGGDRFGDKKMGPGGDFNPEFQRGGGGQDGYRR 447
            + KKNR+AVY+YLFKEGV+V KKDFF  KH  + DVPNL+V+ LM+S+ SRG V+ETFNWQ++YWYLT EGIEYLR YLHLP EIVPATLKK A R  RP  P+ G        GYG  R  DK +GP GDFNPEF+  G  QDGYRR
Sbjct:    3 VPKKNRIAVYSYLFKEGVMVGKKDFFAPKHGDV-DVPNLQVIKLMQSLHSRGYVKETFNWQWYYWYLTAEGIEYLRAYLHLPTEIVPATLKKQAARPQRPQAPSAG--------GYG--RGKDKNLGPSGDFNPEFR--GRNQDGYRR 137
[Close]
BLAST of mRNA_H-paniculata_contig6980.14922.1 vs. uniprot
Match: A0A7R9Z5E5_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z5E5_9STRA)

HSP 1 Score: 169 bits (427), Expect = 2.410e-46
Identity = 96/154 (62.34%), Postives = 111/154 (72.08%), Query Frame = 1 
Query:    7 IQKKNRVAVYTYLFKEGVLVAKKDFFKAKHDAIEDVPNLEVLCLMKSMKSRGLVRETFNWQYFYWYLTVEGIEYLREYLHLPEEIVPATLKKSAPRAARPGPAPGKWDREGGRGYGGDRFGDKKMGPGGDFNPEFQRGGGGQDGYRRGGGFGRG 468
            I KKNRVA+ ++LFKEGVL AKKDF K KH+A+EDV NLEV+ LM S+KSRG V ETFNWQ++YWYLT EGIEYLR +LHLPEEIVP TLKK+  R AR   APG     GGRG        +K GP G+F P +    GG+ GYRR GG GRG
Sbjct:    3 ISKKNRVAILSFLFKEGVLCAKKDFTKPKHEAVEDVSNLEVIKLMTSLKSRGYVTETFNWQWYYWYLTDEGIEYLRNFLHLPEEIVPLTLKKTVTRTARGLDAPGG---RGGRG--------EKGGPSGEFRPRY----GGEGGYRREGGAGRG 141
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6980.14922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G639_ECTSI2.160e-8590.12S10_plectin domain-containing protein n=2 Tax=Ecto... [more]
A0A835YL06_9STRA1.150e-5869.43Plectin/S10 domain-containing protein n=1 Tax=Trib... [more]
A0A8D1CTJ2_PIG7.830e-5885.12S10_plectin domain-containing protein n=1 Tax=Sus ... [more]
A0A7S2XYZ3_9STRA4.150e-5571.90Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A2D4BV11_PYTIN2.810e-5066.8940S ribosomal protein S10 n=1 Tax=Pythium insidios... [more]
A0A8K1FEH4_PYTOL4.060e-5065.77Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
H3G850_PHYRM4.230e-4965.77S10_plectin domain-containing protein n=25 Tax=Oom... [more]
A0A7S2RBH2_9STRA6.650e-4761.96Hypothetical protein n=3 Tax=labyrinthulid quahog ... [more]
A0A024TKD5_9STRA8.870e-4764.19S10_plectin domain-containing protein n=3 Tax=Apha... [more]
A0A7R9Z5E5_9STRA2.410e-4662.34Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6980contigH-paniculata_contig6980:7811..11009 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.4
Seed ortholog evalue2.3e-46
Seed eggNOG ortholog2880.D7G639
Preferred nameRPS10
KEGG koko:K02947,ko:K09422,ko:K10388,ko:K11131
KEGG Pathwayko03008,ko03010,map03008,map03010
KEGG ModuleM00177,M00425
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0000049,GO:0000184,GO:0000956,GO:0001763,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0005856,GO:0005886,GO:0005903,GO:0005912,GO:0005924,GO:0005925,GO:0006139,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006407,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006611,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007044,GO:0007275,GO:0007568,GO:0007584,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008307,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009605,GO:0009653,GO:0009888,GO:0009892,GO:0009925,GO:0009933,GO:0009987,GO:0009991,GO:0010014,GO:0010016,GO:0010223,GO:0010252,GO:0010259,GO:0010346,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016323,GO:0016324,GO:0016528,GO:0019222,GO:0019439,GO:0019538,GO:0022603,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030016,GO:0030054,GO:0030055,GO:0030056,GO:0030312,GO:0030506,GO:0031503,GO:0031581,GO:0031667,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034329,GO:0034330,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0042221,GO:0042254,GO:0042255,GO:0042274,GO:0042383,GO:0042592,GO:0042788,GO:0042886,GO:0043034,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044449,GO:0044459,GO:0044464,GO:0045047,GO:0045111,GO:0045177,GO:0045178,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0047485,GO:0048367,GO:0048471,GO:0048507,GO:0048519,GO:0048532,GO:0048646,GO:0048731,GO:0048831,GO:0048856,GO:0048878,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050896,GO:0051029,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051239,GO:0051641,GO:0051649,GO:0060255,GO:0060688,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070161,GO:0070727,GO:0070925,GO:0070972,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090506,GO:0097064,GO:0097159,GO:0098590,GO:0098862,GO:0099080,GO:0099081,GO:0099512,GO:1900618,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1905393,GO:1905428,GO:1990904,GO:2000026,GO:2000032
EggNOG free text desc.ribosomal small subunit assembly
EggNOG OGsCOG5045@1,KOG3344@2759
Ec32 ortholog descriptionPlectin/S10, N-terminal
Ec32 orthologEc-11_005020.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03000,ko03009,ko03011,ko03032,ko04812
Exons4
Model size1710
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6980.14922.1prot_H-paniculata_contig6980.14922.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6980 7949..9782 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930839.3435419-UTR-H-paniculata_contig6980:7810..79481622930839.3435419-UTR-H-paniculata_contig6980:7810..7948Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6980 7811..7948 +
1691481475.6760547-UTR-H-paniculata_contig6980:7810..79481691481475.6760547-UTR-H-paniculata_contig6980:7810..7948Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6980 7811..7948 +
1622930839.4287846-UTR-H-paniculata_contig6980:9782..110091622930839.4287846-UTR-H-paniculata_contig6980:9782..11009Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6980 9783..11009 +
1691481475.7392359-UTR-H-paniculata_contig6980:9782..110091691481475.7392359-UTR-H-paniculata_contig6980:9782..11009Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6980 9783..11009 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930839.3673995-CDS-H-paniculata_contig6980:7948..79951622930839.3673995-CDS-H-paniculata_contig6980:7948..7995Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6980 7949..7995 +
1691481475.689938-CDS-H-paniculata_contig6980:7948..79951691481475.689938-CDS-H-paniculata_contig6980:7948..7995Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6980 7949..7995 +
1622930839.3835948-CDS-H-paniculata_contig6980:8703..88431622930839.3835948-CDS-H-paniculata_contig6980:8703..8843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6980 8704..8843 +
1691481475.7020817-CDS-H-paniculata_contig6980:8703..88431691481475.7020817-CDS-H-paniculata_contig6980:8703..8843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6980 8704..8843 +
1622930839.4005566-CDS-H-paniculata_contig6980:9166..92581622930839.4005566-CDS-H-paniculata_contig6980:9166..9258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6980 9167..9258 +
1691481475.7172377-CDS-H-paniculata_contig6980:9166..92581691481475.7172377-CDS-H-paniculata_contig6980:9166..9258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6980 9167..9258 +
1622930839.4146674-CDS-H-paniculata_contig6980:9716..97821622930839.4146674-CDS-H-paniculata_contig6980:9716..9782Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6980 9717..9782 +
1691481475.731288-CDS-H-paniculata_contig6980:9716..97821691481475.731288-CDS-H-paniculata_contig6980:9716..9782Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6980 9717..9782 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6980.14922.1

>prot_H-paniculata_contig6980.14922.1 ID=prot_H-paniculata_contig6980.14922.1|Name=mRNA_H-paniculata_contig6980.14922.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MKSMKSRGLVRETFNWQYFYWYLTVEGIEYLREYLHLPEEIVPATLKKSA
PRAARPGPAPGKWDREGGRGYGGDRFGDKKMGPGGDFNPEFQRGGGGQDG
YRRGGGFGRGGGGE*
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mRNA from alignment at H-paniculata_contig6980:7811..11009+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6980.14922.1 ID=mRNA_H-paniculata_contig6980.14922.1|Name=mRNA_H-paniculata_contig6980.14922.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3199bp|location=Sequence derived from alignment at H-paniculata_contig6980:7811..11009+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTTTATTCAAAAGAAGAACCGCGTAGCGGTTTACACATACCTCTTCAA
GGAGGGTGTATTGGTGGCGAAAAAGGACTTCTTCAAGGCTAAGCATGATG
CCATCGAGGATGTACCGAACCTCGAGGTGCTATGCCTCATGAAGTCGATG
AAATCGCGTGGCCTGGTGCGCGAAACCTTCAACTGGTGAGATTCATTGAT
ATTCAAAAAATATTTTGGGGATGTTTCCAAAATTTGAAAGTTGATCTCAA
CCTCGAAACCGTCCAGAGTAGATATGATCGAGTCCAGAGTGGCCTAGAGT
CCACGTACGGTCCTCGACTTGACCGTAATGTAACTATATATGAGGATATC
TCACAAGATGCTTTGATGTGTCATAGGAAAGTCTACGGGTAACGCAGTGA
AAAATTTAGACTAAGATCTATATCCAGCTCAAAGCCGCAGTGGTTCGTTT
CTGATTCGAAATGCCATGGAAAACACGATGAAGGATGTTGCAATCCTATT
CTTGAAAAATAACGTCCCAAAATGCCTCTGCTAACTAACGTATGATATAC
GGAAGAGTTTTTGCACGGACCTACGCCCGAACGGGTAGGGTAGCTCGTGT
ACTGAGCATGACTGGAAGTCTAATCGGAGGTCTTTTAGTGGGTGAAACTC
CAACACTGCCTACCCGGTTCGGCCTAACCGGTGTGGTGCCTACCCTGCGG
AGGAGTTAATAACTATCTTATGTCAAAGGAAATGTAGACGTACTTTAGGG
GAATACCTGAGTGTGGAAGCAGCGGAAAAGGTATTAGCCTCAGCTTTCCA
GGAGTTGAAAAGAATACGGAAGATGTAACCGCGATGGCTTCGCCCGCTCT
ATTTACTCGTGCCGTGTCCTTGGCCGTCGAAAACGGTCAACAGGCAGTAC
TTTTACTGGTACCTTACAGTGGAGGGCATCGAATACCTGAGGGAGTATCT
TCACCTCCCCGAGGAGATCGTACCAGCCACCCTTAAAAAGAGTGCACCTC
GCGCGGCCCGTCCAGGACCCGCCCCCGGTAAGTGTTTCGACGTCAAATAC
CCTGAAGTTCGCAGTTTTTGTCGAAATCCCAAGTATACTTCCATATCTAC
CGTGTAAGTGGATGTCAAAAGCGAAATTGGATTATTTTATAAACCATGTC
ATGCCGTATGTACTGTTGGCCAAAATATTTGAGGTGTAATGTTTGCACAA
TGCATCAAACTATGGAAAAGAATTGGCCATCTGTTCCAAATCTGTACCAA
GTATCCGAAGAGTGATATCTGGTTTTTTTGTCATCGGTGCTCACTGTAAT
TGAGGAAATATGTTCCATGTCTGAACGTTTCAATTGTGACGGTTTCTGGA
TTGCAGGGGACCGCGAGGGCGGGCGTGGCTACGGTGGCGACCGATTCGGC
GACAAAAAGATGGGACCCGGTGGCGACTTTAACCCGGAGTTCCAGAGGGT
GAGTCATGTTTCTTGTTGATGCAATCTTGAGTGATATGTGTGCAGGTCAT
AGCGATTTTCCAGACTTTTCAGTGCGCCAATAGCAAGGGACAACTGCGCG
TCGTCCCAAGGAAATATATATATCCACGAGCCGGTTCTTACGGTTTAATG
TACTAGGTAAAAAAATCTAACCACCTCATTAGGTGGGTATCAACGTTGTA
ACGATCAAGTGAAATAAATGGCATCCGTCGATATAGTTTCGATTGCGAAC
GTTAGACTTTTTTCTGGGACTTCAGACTTTGCTACTCAATAATATAAGTG
TACCTGATCCTGGGTTGTTGAGTAGGTATTGAAAACGTCACGAATCCCTC
ACGATATCTGGAGTGGGGAAAAAACTGGAGGGACGTACGTTTCGAAATAA
ATCTCGCGTTCAACATGCTCAACTCTATCGCCCCGGTGTTGCTGTTTTGG
CGACAGGGTGGAGGTGGGCAGGACGGATACCGTCGCGGAGGTGGCTTCGG
GCGAGGTGGTGGTGGCGAGTAACGTCTTCACCTGCAGGCGAACCCGTCCT
TATAATCCCAGTAACGTGACCGACCACATCATTATCACTCAAATGAATGG
GTGTACGTCCCTTGGCTACGCATCTAGAATTATCAGGAAGAGATTACCGG
TGACGTGGCTAGCTGGACCGATCCACGCATGCAGGGTGAAAACATGAGTT
TCGGCTGGGCCGACTTGGCCAAGGGGGTCATGAGCTTGCCCAGTAGGAAC
TTGGTCATATCTTGACTAAAGGGCATTTGACTTGGACGCCTTATAATAAC
GAGGATTGGGGAAAAATATGCTATGTGTTTGGTGTGCCGCTGTTCTGATG
AGCCTGTGGTCATGTTCACCTGTCGAACACTGGTTACACAGCGTTTACCT
CAGACGAATTGCTGCGATATAGTAGGTTCATGGCGCGTTCAAGCCGTGCG
GGAGTCCTTCTGGGACATAAGGAAAGCTTGTTGTAAGCCTGTTGCAGACT
AATTCTCTGTACTGCTGCTGTCCAAAATTTTACACTGCAGTTTTCAAACA
CAAGACTGGTGATTCTCTCGCATATGTATAGGAATGTGAGTTTATACTAT
CGAATTACCCCAACAATACAATATTCACGCTGTACTCATGTTCATTCATA
TCATGACTAAACTGCGACATGATGAATCACTTCTTCGAGTAATGACACCA
CATGGTGAAATTCAAAAACAATACGGAAAAATACACGGAGAAGAGAGAAA
AGTAATTTCATCGATTAGTACCACCCAGTTTGTTGACAGGACGTACCTGC
ATTCCACGGGATTCTCTCAAAACGAGTGTAGTAGGAAGATGAGTAGAGGA
ACACGTCGATAACTTTACTGCATATACGAGTTAAACTGTACGAGGATAAT
ACCCACCCAGTAAAAGATCGATCAACAGACTTGTTGGAAGAAGAGAAAAG
ACGTAGAAAAAGTAGGAAGACGTTCGTGAAAAATATCACTTCTGCATCCC
AAAGATCAAAATCGTGCTGAAAAGCACAAATTTCGAACGTGACAAGTATG
ATCATCAAGACAAATAGAGCGTACGATAAATGAAATTGTCCATGCACGTT
GTATTATGTTACAAACCTCGAAAGAGGAGAGTAGAGAGTGGAGGTAAACA
ATTTCTACCCAGAGCTTCATACTGTCATACATCTACGGTGCGTTTGACAG
GACAAAAACATGTTTGGTTAATGAATTTTTATTATTTATTTCGATAGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig6980:7811..11009+

>mRNA_H-paniculata_contig6980.14922.1 ID=mRNA_H-paniculata_contig6980.14922.1|Name=mRNA_H-paniculata_contig6980.14922.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig6980:7811..11009+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGTCGATGAAATCGCGTGGCCTGGTGCGCGAAACCTTCAACTGATG
AAGTCGATGAAATCGCGTGGCCTGGTGCGCGAAACCTTCAACTGGCAGTA
CTTTTACTGGTACCTTACAGTGGAGGGCATCGAATACCTGAGGGAGTATC
TTCACCTCCCCGAGGAGATCGTACCAGCCACCCTTAAAAAGAGTGCACCT
CGCGCGGCCCGTCCAGGACCCGCCCCCGGTAAGTGCAGTACTTTTACTGG
TACCTTACAGTGGAGGGCATCGAATACCTGAGGGAGTATCTTCACCTCCC
CGAGGAGATCGTACCAGCCACCCTTAAAAAGAGTGCACCTCGCGCGGCCC
GTCCAGGACCCGCCCCCGGTAAGTGGGACCGCGAGGGCGGGCGTGGCTAC
GGTGGCGACCGATTCGGCGACAAAAAGATGGGACCCGGTGGCGACTTTAA
CCCGGAGTTCCAGAGGGGGACCGCGAGGGCGGGCGTGGCTACGGTGGCGA
CCGATTCGGCGACAAAAAGATGGGACCCGGTGGCGACTTTAACCCGGAGT
TCCAGAGGGGTGGAGGTGGGCAGGACGGATACCGTCGCGGAGGTGGCTTC
GGGCGAGGTGGTGGTGGCGAGTAAGGTGGAGGTGGGCAGGACGGATACCG
TCGCGGAGGTGGCTTCGGGCGAGGTGGTGGTGGCGAGTAA
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