mRNA_H-paniculata_contig6980.14920.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6980.14920.1
Unique NamemRNA_H-paniculata_contig6980.14920.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6980.14920.1 vs. uniprot
Match: D7G640_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G640_ECTSI)

HSP 1 Score: 553 bits (1426), Expect = 5.810e-188
Identity = 301/478 (62.97%), Postives = 349/478 (73.01%), Query Frame = 3
Query:  102 SRYGEVEDVEAILSSGVGADHQDKHGNTALHLSCANGHPDVVRALIKAGATHLPNAAGNRPLQWAVQNKHEACVKVLLELFPTSSQMNVLDKNGFGKSALTDAFMTGDAELVKMILNHKSAEEDMLLSQSSLGKDKDKDQQQRTTRKDMSENSAAHVSALADDQGDA--KSSVGGAATGEDDNSPSITHELGFG-GARHSEESEEAGAP-----------------RELSFFMRELPIRNPDECFGDDPKEDTTGLCLWGASVVLARWVASAELQKRLGEKSVLELGAGCGAGGISAAVHGRPASVVLTDLNVETMANMAHNVELNRNQYQAGTEVRAETLDWEDESTWSAASPPFDVVLGCDLVYQASVAPKLLHTIFSLLKPGGTFLHVCPVGGERDGLEEFLADLGVVEAGKGEAGKADGTGRRSNDSGFELVSVVDAPAEYAQNPLVSGSEEEYLLHFNELPTTTYRLMECRKR 1475
            +RYGE+EDVEAILSSGV A+HQD HGNTALHLSCANGH DV+RALIKAGA+HLPN AGNRPLQWAVQNKH+ACVK+L+EL+P SSQMNVLD NGFGKSAL+DAF TGDAE+VKM+LNHKSAEED+LL QSSL KDK K +++  + K ++             +GDA  +   GG+  G     PSITHELGFG G   +  S                       R + F +REL IRNPDECFGDD +EDTTGL LW A+VVLARWVAS  +  RL  K+VLELGAGCGAGGISAAVHG PAS+++TDLN ETMAN+ HN+ELNR++Y AGTEVRA  LDW DESTW  A PP DVVL  D+VYQAS    LLH I SLLKPGG+F HV PV  ERDGLE FLA L     G+G A    G      DSGFELVS  DAP E+ QNPL+SGS++EY++HFNELP++T+RL E RKR
Sbjct:   13 ARYGELEDVEAILSSGVDANHQDAHGNTALHLSCANGHADVIRALIKAGASHLPNGAGNRPLQWAVQNKHDACVKLLMELYPESSQMNVLDTNGFGKSALSDAFKTGDAEMVKMVLNHKSAEEDILLQQSSLSKDKSKMKKEGISSKPVNSK-----------KGDAGHEEDDGGSGDG-----PSITHELGFGIGEGEAVTSXXXXXXXXXXXXXXXXXXXXXXXRGVRFLLRELAIRNPDECFGDDAREDTTGLNLWAAAVVLARWVASPAIVSRLDGKTVLELGAGCGAGGISAAVHGSPASMLITDLNAETMANLGHNIELNRHRYPAGTEVRAVKLDWGDESTWEEAKPPVDVVLAADVVYQASETSPLLHAILSLLKPGGSFFHVAPVS-ERDGLEGFLARLCGTAGGEGAAAGGGG------DSGFELVSATDAPPEFCQNPLLSGSQDEYMVHFNELPSSTFRLHEFRKR 467          
BLAST of mRNA_H-paniculata_contig6980.14920.1 vs. uniprot
Match: A0A7S4SA78_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SA78_9STRA)

HSP 1 Score: 284 bits (726), Expect = 1.910e-83
Identity = 191/474 (40.30%), Postives = 255/474 (53.80%), Query Frame = 3
Query:   69 SKDMGADLLDCSRYGEVEDVEAILS--------SGVGADHQDKHGNTALHLSCANGHPDVVRALIKAGATHLPNAAGNRPLQWAVQNKHEACVKVLLELFPTSSQMNVLDKNGFGKSALTDAFMTGDAELVKMILNHKSAEEDMLLSQSSLGKDKDKDQQQRTTRKDMSENSAAHVSALADDQGDAKSSVGGAATGEDDNSPSITHELGFGGARHSEE-SEEAGAPRELSFFMRELPIRNPDECFGDDPKEDTTGLCLWGASVVLARWVASAELQKRLGEKSVLELGAGCGAGGISAAVHGRPASVVLTDLNVETMANMAHNVELNRNQ--YQAGTEVRAETLDWEDESTWSAASPPFDVVLGCDLVYQASVAPKLLHTIFSLLKPGGTFLHVCPVGGERDGLEEFLADLGVVEAGKGEAGKADGTGRRSNDSGFELVSVVDAPAEYAQNPLVSGSEEEYLLHFNELPTTTYRL 1457
            S +   +L DC+RYGEV+ V AIL         +    D  D    TALH  CANGH    + LI  GA+HLPN +GN              V++LL+       M+VL KN FG+SALT+ F + + +LV ++L H SAEE+ LLS      D D        R     N  A++   +D      SSVG ++T        + HE  F  +   E+  ++     E S  +RELPI + D+ FGD   +DTTGL +W AS+V++RWVAS  + K+L +KSV+ELGAGCG  G++AA +    SV LTDLN  TM+N+ HN+++N  Q      T V A ++DW DESTW A     DVV+G DL+YQ+S+ P L   +  LL   GTFL+V P  G RDGL EF+A +      KGE              GF     + AP  Y  NPL SG EE+  LHF+EL +TTY L
Sbjct:   51 SDEAQTELRDCARYGEVDAVRAILDVWQEKFDKAAAFVDCTDSSHTTALHKCCANGHFSTAKLLILRGASHLPNDSGNXXXXXXXXXXXXXVVEILLKEPRFQKDMDVLAKNNFGRSALTEGFSSSNTKLVGLLLEHDSAEEEKLLSGGKPIDDVD-------NRDGDKINGDANLKIGSD----GTSSVGSSST------TCVVHEFDFLNSSEKEDFQQQIQENNERSVLIRELPIAHADDPFGDKAIDDTTGLGIWCASLVMSRWVASPAVSKQLKDKSVVELGAGCGVPGLAAAAYSDAKSVSLTDLNPATMSNLRHNIDINGKQGGENWSTRVTAASIDWGDESTWPADK--VDVVIGSDLIYQSSIVPLLRKVVTGLLGKQGTFLYVAPDTG-RDGLPEFIAVM------KGE--------------GFHCEEEIIAPPSYCANPLKSGDEEDCFLHFHELASTTYIL 484          
BLAST of mRNA_H-paniculata_contig6980.14920.1 vs. uniprot
Match: A0A7S0PT27_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PT27_9STRA)

HSP 1 Score: 280 bits (715), Expect = 3.950e-82
Identity = 173/475 (36.42%), Postives = 250/475 (52.63%), Query Frame = 3
Query:   87 DLLDCSRYGEVEDVEAILSSGVGA-DHQDKHGNTALHLSCANGHPDVVRALIKAGATHLPNAAGNRPLQWAVQNKHEACVKVLLELFPTSSQMNVLDKNGFGKSALTDAFMTGDAELVKMILNHKSAEEDMLLSQSSLGKDKDKDQQQRTTRKDMSENSAAHVSALADDQGDAKSSVGGAATGEDDNSPSITHELGFGGARHSEESE-EAGAPRELSFFMRELPIRNPDECFGDDPKEDTTGLCLWGASVVLARWVASAELQKRLGEKSVLELGAGCGAGGISAAVHGRPASVVLTDLNVETMANMAHNVELNRNQ-------------YQAGTEVRAETLDWEDESTWSAASPPFDVVLGCDLVYQASVAPKLLHTIFSLLKP-GGTFLHVCPVGGERDGLEEFLADLGVVEAGKGEAGKADGTGRRSNDSGFELVSVVDAPAEYAQNPLVSGSEEEYLLHFNELPTTTYRLME 1463
            +LLDC+RYG+++ V A+L       D  D   +TALH  CANGH    + L++ GA H  N +GN PL WA    H   V++LLE       M+VL KN FG+S+LT+ F + + E+ +++L H SA E+ LL                             +    D++G         + G+    PSI HE  F    + E+ E +     E +  +RELPI + D  FGD   EDTTG  +W AS+ +ARW+A+ ++ +R   K+VLELGAGCG  G++AA + R   V +TDLN  T+ NM HN++LN+ Q              Q    V A ++DW+DE+TW       D V+G DL+YQ+++ P L   +  LLKP GG FL+VCP  G RDGL++F+  +           K+DG           LV+   AP  Y  NPL+S ++++  LHF+EL ++TY L E
Sbjct:   40 ELLDCARYGDLDPVRAVLDCFPEVIDAADSEESTALHKCCANGHVSTTKLLLQRGAAHTANRSGNTPLHWAAGAGHGEIVQILLENERLKPDMDVLVKNKFGRSSLTEGFASKETEVARLLLEHDSATEERLLK------------------------GGKEIDVSDDEEG---------SNGDGKKKPSIVHEFNFRNQAYEEKEEIDENKMSEEALLIRELPIAHADNPFGDKAIEDTTGYGIWCASLAMARWMATPDMSERFDNKTVLELGAGCGVPGLAAAFYSRAQRVYITDLNPTTIENMQHNIDLNQAQTAPVPSDEDKQPHQQWNERVIASSIDWDDETTWP--DEKLDFVIGSDLIYQSNIVPLLKKVVLGLLKPKGGRFLYVCPDTG-RDGLDDFIKSM-----------KSDGCC---------LVNECVAPQSYHANPLMSQNDDQCFLHFHELASSTYMLYE 458          
BLAST of mRNA_H-paniculata_contig6980.14920.1 vs. uniprot
Match: K0R1V2_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R1V2_THAOC)

HSP 1 Score: 258 bits (660), Expect = 2.670e-73
Identity = 195/535 (36.45%), Postives = 256/535 (47.85%), Query Frame = 3
Query:   36 DGLELADIGEMSKDMGADLLDCSRYGEVEDVEAILS---------------SGVGA---DHQDKHGNTALHLSCANGHPDVVRALIKAGA-THLPNAAGNRPLQWAVQNKHEACVKVLLELFPT------SSQMNVLDKNGFGKSALTDAFMTGDAELVKMILNHKSAEEDMLLSQSSLGKDKDKDQQQRTTRKDMSENSAAHVSALADDQGDAKSSVGGAATGEDDNSPSITHELGFGGARHSEESEEAGAPRELSFFMREL-------------------------------PIRNPDECFGDDPKEDTTGLCLWGASVVLARWVASAELQKRLGEKSVLELGAGCGAGGISAAVHGRPASVVLTDLNVETMANMAHNVELNRNQYQAGTEVRAETLDWEDESTWSAASPPFDVVLGCDLVYQASVAPKLLHTIFSLLKPGGTFLHVCPVGGERDGLEEFLADLGVVEAGKGEAGKADGTGRRSNDSGFELVSVVDAPAEYAQNPLVSGSEEEYLLHFNELPTTTYRLMECRK 1472
            D   LAD GE S    ++L+DC+RYGEV+ V AIL                SG  A   D  D  G+T LH +CAN H    R L+  GA  H  N                                    +++VL KNGFG+SALT+AF +GD   V+ +LNH SAEED L+     G D          RKD SE  A  V+       + KS   G    + D+   I HE  F   R SEE E   +    +  +REL                               PI++ D+ FG  P++DTTGL +W AS+V+ARW+AS  + +R+  + V ELGAGC    ++AAVHG PA V+ TDLN ET+ N+ HNVELN +  +A  ++ A T+DW DEST+     P D VL  D +YQ  + P L   +  +L PGGTFL+V P GG RDGL  F++ +G                     +GFE     +AP  Y  NPL SG  E+  LHF+EL +T Y L E RK
Sbjct:   62 DASGLADYGEAS----SELIDCARYGEVDAVRAILDVWSPGKSKDGDLPLESGQPARIVDAADASGSTPLHKACANKHSSTARLLLSRGADAHALNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGGRLDVLLKNGFGRSALTEAFASGDTATVQHVLNHDSAEEDRLIG----GLD----------RKDASEGEADEVA-------EGKSEGAGE---KSDDEKGIVHEFDF--LRCSEEGEAVDSNERPTVLIRELVSGMKSMRGNDCQGSSASRLYIHLSFSRNPQPIKHADDPFGQAPEDDTTGLGIWCASLVMARWLASPSMVERMAGRRVRELGAGCAIPSLAAAVHGSPAEVIATDLNPETVENIRHNVELNSSTSRAA-KLSAATIDWGDESTYPP--DPVDYVLCSDCIYQRDIVPLLRKVVSGVLAPGGTFLYVAPDGG-RDGLPAFISSMGK--------------------NGFERAGGREAPEGYRSNPLRSGDGEDCFLHFHELASTRYVLYEFRK 542          
BLAST of mRNA_H-paniculata_contig6980.14920.1 vs. uniprot
Match: A0A7S1UBQ5_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UBQ5_9STRA)

HSP 1 Score: 223 bits (567), Expect = 3.080e-61
Identity = 151/467 (32.33%), Postives = 213/467 (45.61%), Query Frame = 3
Query:   87 DLLDCSRYGEVEDVEAILSSGVGADHQDKHGNTALHLSCANGHPDVVRALIKAGATHLPNAAGNRPLQWAVQNKHEACVKVLLELFPTSSQMNVLDKNGFGKSALTDAFMTGDAELVKMILNHKSAEEDMLLSQSSLGKDKDKDQQQRTTRKDMSENSAAHVSALADDQGDAKSSVGGAATGEDDNSPSITHELGFGGARHSEESEEAGAPRELSFFMRE-LPIRNPDECFGDDPKEDTTGLCLWGASVVLARWVASAELQKRLGEKSVLELGAGCGAGGISAAVHGRPASVVLTDLNVETMANMAHNVELNRNQYQAGTEVRAETLDWEDESTWSAASPPFDVVLGCDLVYQASVAPKLLHTIFSLLKPGGTFLHVCPVGGERDGLEEFLADLGVVEAGKGEAGKADGTGRRSNDSGFELVSVV----DAPAEYAQNPLVSGSEEEYLLHFNELPTTTYRLMECRK 1472
            DL++C+RYGE  DV  +L  G+  D +   G+TALH++CANGH  VVR L++ GA   PN AGN P  WA QN    C++ L+        ++VL +NG+GK  LT A   G AE+ +++L H SA E+ L                                                   E D    +TH   FG          AG        +RE + +   +  FG+  +ED TGL +W A+++LARW+           + V+ELGAGCG  G++  V    A V +TDLN  TM N  HNV LN         VR   LDW D +TW A  P    V+G DLVY A + P L+ T+  LL   G+  + C     R GL EFL  +G                    D+GF++  +     D  + + QNPL SG +E + L+F ++ +  Y L +  +
Sbjct:   14 DLVECARYGEAADVVLLLDLGLPVDSRGPDGSTALHMACANGHAGVVRTLLERGAVQTPNDAGNLPAHWAAQNNELDCMRALIA---GCEGLDVLARNGYGKGVLTVAIAGGHAEMAELLLTHPSASEEKLXXXXXXX---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQDQEAEVTHAFNFG----------AG-----DVLIREKVMVHENEHAFGERSEEDRTGLGVWSAALLLARWLTMKRRSFDRAGEFVVELGAGCGVSGVALGVAAPAARVWITDLNPVTMENARHNVGLNFEADADAERVRGVVLDWRDRATWPAERPT--AVIGADLVYTAEIVPMLVSTVSGLLPDVGSAFYYCAPTTGRHGLPEFLQAMG--------------------DAGFKIAEMTEVGHDDLSPFRQNPLKSGDDELFFLYFQDMHSFAYLLYKFER 431          
BLAST of mRNA_H-paniculata_contig6980.14920.1 vs. uniprot
Match: A0A7S2LND3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LND3_9STRA)

HSP 1 Score: 220 bits (561), Expect = 1.470e-60
Identity = 168/461 (36.44%), Postives = 222/461 (48.16%), Query Frame = 3
Query:  159 DHQDKHGNTALHLSCANGHPDVVRALIKAGATHLPNAAGNRPLQWAVQNKHEACVKVLLELFPTSSQMNVLDKNGFGKSALTDAFMTGDAELVKMILNHKSAEEDMLLSQSSLGKDKDKDQQQRTTRKDMSENSAAHVSALADDQGDAKSSVGGAATGEDDNSPSITHELGFGGARHSEESEEAGAPRELSFFMRELPIRNPDECFGDDPKEDTTGLCLWGASVVLARWVASAELQKRLGEKSVLELGAGCGAGGISAAVH---GRPASVVLTDLNVETMANMAHNVELNRNQYQA------GTEVRAETLDWEDESTWSAA----SPPFDVVLGCDLVYQASVAPKLLHTIFSLLKPGGT---------FLHVCPVGGERDGLEEFLADLGVVEAGKGEAGKADGTGRRSNDSGFELVSVVDAPAEYAQNPLVSGSEEEYLLHFNELPTTTYRLMECRKR 1475
            D  D  G+TALH +  NGH +VV  L+  GA+H PN                     LL  F     ++VL KN FGKSALT+ F  G A +      +KS              D D D  +  T   + E+  A    L          +GGA  G DD     T      G  H  + +   + +  +  +RELPI + D  FG +P EDTTGL +W AS+V+ARW+AS E+  R   K++ ELGAGC   G++AA++     P  V LTDLN  TM NM +NVE+N ++ Q        + V+A T+DW D+STW       +   D V+G DL+YQAS+ P L   +  LL  G +         FL+V P  G RDGL EF+  +                    ND GFE V+   AP EY  NPL SG  +E  LHFNEL T+TY L E RK+
Sbjct:   11 DAVDGAGSTALHKAACNGHMEVVELLVLRGASHAPNNNXXXXXXXXXXXXXXXXXXFLLSHF---KDIDVLQKNKFGKSALTEGF-AGAAAVGSSNTKNKS--------------DDDIDTAKTNTVGALLEHDTATEDRL----------IGGAVKGGDDKKDGDTAAAHNDGITHELQLQPESSDKN-TLLIRELPIAHADNPFGANPHEDTTGLGIWCASLVMARWMASPEMGSRFQGKNLCELGAGCAIPGLAAALYCPGNMPNRVYLTDLNEATMKNMKYNVEINCDRCQTCDAEEWRSHVQALTMDWGDKSTWPVVCKDDAGSIDFVIGSDLIYQASIVPLLKQVVVGLLTSGDSNDENSNPKSFLYVAPDTG-RDGLPEFIESM-------------------KND-GFECVTEKVAPDEYRANPLKSGDADECFLHFNELSTSTYILYEFRKK 421          
BLAST of mRNA_H-paniculata_contig6980.14920.1 vs. uniprot
Match: F2U3Z6_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U3Z6_SALR5)

HSP 1 Score: 220 bits (561), Expect = 1.670e-59
Identity = 162/506 (32.02%), Postives = 235/506 (46.44%), Query Frame = 3
Query:   48 LADIGEMSKDMGADLLDCSRYGEVEDVEAILSSGVGADHQDKHGNTALHLSCANGHPDVVRALIKAGATHLPNAAGNRPLQWAVQNKHEACVKVLLELFPTSSQMNVLDKNGFGKSALTDAFMTGDAELVKMILNHKSAEEDMLLSQSSLGKDKDKDQQQRTTRKDMSEN------------------------SAAHVSALADDQGDAKSSVGGAATGEDDNSPSI------THELGFGGARHSEESEEAGAPRELSFFMRELPIRNPDECFGDDPKEDTTGLCLWGASVVLARWVASAELQKRLGEKSVLELGAGCGAGGISAAVHGRPASVVLTDLNVETMANMAHNVELNRNQYQAGTEVRAETLDWEDESTWSAASP----PFDVVLGCDLVYQASVAPKLLHTIFSLLKPGGTFLHVCPVGGERDGLEEFLADLGVVEAGKGEAGKADGTGRRSNDSGFELVSVVDAPAEYAQNPLVSGSEEEYLLHFNELPTTTYRLME 1463
            +A+   ++++   ++L C+RYGEV++++ ++  GV  D +D  GNTALH + ANG  D    L+K    +LPN +GN PL  A+QNK    V++L++ +P   ++NVL  N FGKSA+T+AF   D +++K++L H SA      +    GKD    +                                    + A  S    D             G DD + S       TH++ F             +P      +RE+      + FGD P++DTTG+ LW AS++ ARWV   ++  RL    VLELGAGCG  G++A  +     VV+TD    T+ N+ HN+ +N +            LDW +E+TW   S      FDV+LGCDLVY   +   L + +   L P GTF +V   GG+R G +EF+  L                     D G E   +     EY  NPLVSG E+E  LHFNEL      L E
Sbjct:    1 MAEKRSVTEEDVEEMLLCARYGEVDEMKELIELGVPVDSKDGMGNTALHYAAANGLMDCAEYLVKKKCPYLPNNSGNLPLXXAIQNKAADVVQLLMKSYP---EVNVLQTNEFGKSAVTEAFNAQDQQILKLVLEHPSA-----AALEEEGKDGSSGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATATASTAQQDXXXXXXXXXXXTAGRDDTAESSQVLQTHTHDMRF-------------SPDGPEVHVREIATDWFGKVFGDMPEDDTTGIQLWAASLIAARWVV--DVAARLDGARVLELGAGCGLPGLAALAYTHAKQVVITDYFSHTVDNIKHNLSINAHIPTLTERGHVHALDWNNENTWLHESDGNLCQFDVLLGCDLVYDTPLVAPLCNLVRRCLAPHGTFFYVS--GGKRKGAKEFITAL--------------------RDCGLECK-IAPLKPEYKANPLVSGDEQELELHFNELHENVQVLFE 460          
BLAST of mRNA_H-paniculata_contig6980.14920.1 vs. uniprot
Match: W7TI43_9STRA (Nicotinamide N-methyltransferase, putative n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TI43_9STRA)

HSP 1 Score: 211 bits (537), Expect = 8.830e-57
Identity = 163/484 (33.68%), Postives = 244/484 (50.41%), Query Frame = 3
Query:   72 KDMGADLLDCSRYGEVEDVEAILSSGVGADHQD----KHGNTALHLSCANGHPDVVRALIKAGATHLP-NAAGNRPLQWAVQNKHEACVKVLLELFPTSSQMNVLDKNGFGKSALTDAFMTGDAELVKMILNHKSAEEDMLLSQSSLGKDKDKDQQQRTTRKDMSENSAAHVSALADDQGDAKSSVGGAATGEDDNSPSITHELGFGGARHSEESEEAGAPRELSFFMRELPIRNPDECFGDDPKEDTTGLCLWGASVVLARWVASAELQKRLGEKSVLELGAGCGAGGISAAVHGRPASVVLTDLNVETMANMAHNVELNRNQY---QAGTEVRAETLDWEDESTWS-AASPPFDVVLGCDLVYQASVAPKLLHTIFSLLKPGGTFLHVCPVGGERDGLEEFLADL----GVVEAGKGEAGKADGTGRRSNDSGFELVSVVDAPAEYAQNPLVSGSEEE-YLLHFNELPT--TTYRLMECRKR 1475
            +++G  +LD +RYG+VED++ + S+  G +H        GNTALH +CANGH D V  LI  G      N +             EA V++LLE       ++VL +N FGKS LT+ F      ++K++L H SA+ED L+     G+ ++        +  +     A+ +          S  GG AT        + H L            E    R L   +REL I + D+ FG    +DTTGL +W A++VLA+W+   E ++ L   +++ELG GC   G++AA+HGRP +V LTDLN ET+ N   N+ +NR  +   +    V    +DW DE ++  +A    D+VLG DLVYQ S+AP L   +  L++PGG FL+V P  G RDGLE+F+  L    G+ +  + EAG       +   +  E   +V+      Q    + S ++ + LHFNEL T    Y+L E  K+
Sbjct:   15 EEVGQAVLDAARYGDVEDLQELTST-YGGNHLGFRGGNGGNTALHFACANGHVDCVAWLIDQGVEGCAANESXXXXXXXXXXXXXEAVVRLLLEKL---ENVDVLARNAFGKSVLTEGFAGKSQGILKLLLEHPSADEDALMGGEGQGQCQEGSDGGEVLKAGLQSAKEANEA----------SGGGGEAT--------VIHRLVL--------DRENDPDRVLQ--IRELAIEHADDPFGKAAADDTTGLGVWPAALVLAQWLVQ-ERKELLDASTIVELGCGCAVPGLAAALHGRPRAVHLTDLNSETLMNARANLAMNRENFLVPETAACVHVSAMDWGDEQSYPPSAVGAVDLVLGSDLVYQKSLAPLLAQVLCRLMRPGGRFLYVAPATG-RDGLEDFVKGLSDRAGLFQVSEKEAGP------KLLGNPLEGGGMVEGSTGSPQEEEAADSADQMFFLHFNELATQEVVYKLYEYVKQ 458          
BLAST of mRNA_H-paniculata_contig6980.14920.1 vs. uniprot
Match: A0A448ZDB8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZDB8_9STRA)

HSP 1 Score: 202 bits (515), Expect = 7.610e-54
Identity = 154/469 (32.84%), Postives = 218/469 (46.48%), Query Frame = 3
Query:   93 LDCSRYGEVEDVEAILSSG-------VGADHQDKHGNTALHLSCANGHPDVVRALIKA-GATHLPNAAGNRPLQWAVQNKHEACVKVLLELFPTSSQMNVLDKNGFGKSALTDAFMTGDAELVKMILNHKSAEEDMLLSQSSLGKDKDKDQQQRTTRKDMSENSAAHVSALADDQGDAKSSVGGAATGEDDNSPSITHELGFGGARHSEESEEAGAPRELSFFMRELPIRNPDECFGDD--PKEDTTGLCLWGASVVLARWVASAELQKRLGEKSVLELGAGCGAGGISAAVH--GRPASVVLTDLNVETMANMAHNVELNRNQYQAGTEVRAETLDWEDESTWSAASPPFDVVLGCDLVYQASVAPKLLHTIFSLLKPGGTFLHVCPVGGERDGLEEFLADLGVVEAGKGEAGKADGTGRRSNDSGFELVSVVDAPAEYAQNPLVSGSEEEYLLHFNELPTTTYRLME 1463
            ++  RYGEV+ V A+  +        +G  H D  GNT LH++ ANGH +VV+ L++  G +   NA+                         T  +++VL+KN  G+SALT+ F + + ++V  IL H SA E+ LLS  S                                    +   GG   GE++   S  H                   +E    +REL ++N D  F D   P +DTTGL +W AS+V+ARW+ +  +     + SVLELG+GCG  G+  A     RP  + LTDLN +T+ N+ +N+ELN  Q      V A+ +DWED+STW       D V+G DL+Y  S+ P L   IF  +KPGG FL+VCP  G RDGL+ F+  +                 ++      E V    AP EY  NPL +  +EE  LHF EL + TY L E
Sbjct:   52 MESCRYGEVDVVRALAENFPSSQETLIGFVHPDT-GNTGLHMASANGHTNVVKLLVRQYGHSFTKNASXXXXXXXXXXXXXXXXXXFWTS--QTIVEVDVLEKNAHGRSALTEGFSSQNEDVVAAILEHDSASEEKLLSTGS------------------------------------QKGTGGNEDGEEELLDSHVHSF---------------FDKERPLKIRELAMKNADNPFADTDRPDQDTTGLSIWSASLVMARWMQAVGMTGYWKDSSVLELGSGCGVPGLMVATSDASRPRRMFLTDLNPQTVDNLRYNIELNEVQ----DFVEAKCMDWEDKSTWPEEK--VDHVIGSDLIYIKSLVPLLTSVIFGTIKPGGKFLYVCPDTG-RDGLDAFVEAM-----------------KQKCPGWVEQV----APKEYHSNPLTNEDDEECFLHFQELSSLTYMLYE 438          
BLAST of mRNA_H-paniculata_contig6980.14920.1 vs. uniprot
Match: A0A4D9CN82_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CN82_9STRA)

HSP 1 Score: 203 bits (517), Expect = 8.420e-54
Identity = 149/428 (34.81%), Postives = 218/428 (50.93%), Query Frame = 3
Query:   72 KDMGADLLDCSRYGEVEDVEAILSS----------GVGADHQDKHGNTALHLSCANGHPDVVRALIKAGATHLP-NAAGNRPLQWAVQNKHEACVKVLLELFPTSSQMNVLDKNGFGKSALTDAFMTGDAELVKMILNHKSAEEDMLLSQSSLGKDKDKDQQQRTTRKDMSENSAAHVSALADDQGDAKSSVGGAATGEDDNSPSITHELGFGGARHSEESEEAGAPRELSFFMRELPIRNPDECFGDDPKEDTTGLCLWGASVVLARWVASAELQKRLGEKSVLELGAGCGAGGISAAVHGRPASVVLTDLNVETMANMAHNVELNRNQY---QAGTEVRAETLDWEDESTWS-AASPPFDVVLGCDLVYQASVAPKLLHTIFSLLKPGGTFLHVCPVGGERDGLEEFLADL----GVVEAGKGEAG 1298
            +++G  +LD +RYG+VED++ + ++          G G       GNTALH +CANGH D V  LI  G      N +G           HEA V++LLE       ++VL +N FGKS LT+ F      ++K++L H SA+ED L+     G+  +        +  +     A+ +          S  GG AT        + H L            E    R L   +REL I + D+ FG    +DTTGL +W A++VLA+W+   E ++ L   +++ELG GC    ++AA+HGRP ++ LTDLN ET+ N   N+ +NR  +   +    V    +DW DE ++  +A    D+VLG DLVYQ S+AP L   +  L+KPGG FL+V P  G RDGLE+FL  L    G+ +  + EAG
Sbjct:   15 EEVGQAILDAARYGDVEDLQELTNTYGKNQLGFRGGYG-------GNTALHFACANGHVDCVAWLIDQGVEGCAANESGXXXXXXXXXXXHEAVVRLLLEKV---ENVDVLARNAFGKSVLTEGFAGKSQGILKLLLEHPSADEDALMGGEGQGQCHEGSDGGEVLKAGLQSEKKANKA----------SGGGGEAT--------VIHRLVL--------DRENDPDRVLQ--IRELAIEHADDPFGKAAADDTTGLGVWPAALVLAQWLVQ-ERKELLDASTIVELGCGCAVPALAAALHGRPRALHLTDLNSETLMNARANLAMNRENFLVPETAACVHVSAMDWGDEQSYPPSAVGAVDLVLGSDLVYQKSLAPLLAQVLCRLMKPGGRFLYVAPATG-RDGLEDFLKGLLDRAGLFQVSEKEAG 402          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6980.14920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G640_ECTSI5.810e-18862.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4SA78_9STRA1.910e-8340.30Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S0PT27_9STRA3.950e-8236.42Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]
K0R1V2_THAOC2.670e-7336.45Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S1UBQ5_9STRA3.080e-6132.33Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2LND3_9STRA1.470e-6036.44Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
F2U3Z6_SALR51.670e-5932.02Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
W7TI43_9STRA8.830e-5733.68Nicotinamide N-methyltransferase, putative n=1 Tax... [more]
A0A448ZDB8_9STRA7.610e-5432.84Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A4D9CN82_9STRA8.420e-5434.81Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6980contigH-paniculata_contig6980:62..6152 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score559.7
Seed ortholog evalue1.3e-156
Seed eggNOG ortholog2880.D7G640
Hectar predicted targeting categoryother localisation
EggNOG free text desc.methyltransferase activity
EggNOG OGsKOG2497@1,KOG2497@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-11_005030.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size2399
Cds size1416
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6980.14920.1prot_H-paniculata_contig6980.14920.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6980 980..6087 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930839.1686091-UTR-H-paniculata_contig6980:61..9791622930839.1686091-UTR-H-paniculata_contig6980:61..979Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6980 62..979 -
1691481475.597826-UTR-H-paniculata_contig6980:61..9791691481475.597826-UTR-H-paniculata_contig6980:61..979Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6980 62..979 -
1622930839.2964876-UTR-H-paniculata_contig6980:6087..61521622930839.2964876-UTR-H-paniculata_contig6980:6087..6152Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6980 6088..6152 -
1691481475.6656108-UTR-H-paniculata_contig6980:6087..61521691481475.6656108-UTR-H-paniculata_contig6980:6087..6152Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6980 6088..6152 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930839.182231-CDS-H-paniculata_contig6980:979..14141622930839.182231-CDS-H-paniculata_contig6980:979..1414Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6980 980..1414 -
1691481475.609604-CDS-H-paniculata_contig6980:979..14141691481475.609604-CDS-H-paniculata_contig6980:979..1414Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6980 980..1414 -
1622930839.1979084-CDS-H-paniculata_contig6980:2559..26861622930839.1979084-CDS-H-paniculata_contig6980:2559..2686Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6980 2560..2686 -
1691481475.618808-CDS-H-paniculata_contig6980:2559..26861691481475.618808-CDS-H-paniculata_contig6980:2559..2686Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6980 2560..2686 -
1622930839.2112749-CDS-H-paniculata_contig6980:3167..36791622930839.2112749-CDS-H-paniculata_contig6980:3167..3679Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6980 3168..3679 -
1691481475.6304517-CDS-H-paniculata_contig6980:3167..36791691481475.6304517-CDS-H-paniculata_contig6980:3167..3679Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6980 3168..3679 -
1622930839.2261477-CDS-H-paniculata_contig6980:4084..42111622930839.2261477-CDS-H-paniculata_contig6980:4084..4211Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6980 4085..4211 -
1691481475.638989-CDS-H-paniculata_contig6980:4084..42111691481475.638989-CDS-H-paniculata_contig6980:4084..4211Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6980 4085..4211 -
1622930839.2445872-CDS-H-paniculata_contig6980:5392..55661622930839.2445872-CDS-H-paniculata_contig6980:5392..5566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6980 5393..5566 -
1691481475.6474679-CDS-H-paniculata_contig6980:5392..55661691481475.6474679-CDS-H-paniculata_contig6980:5392..5566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6980 5393..5566 -
1622930839.2627797-CDS-H-paniculata_contig6980:6046..60871622930839.2627797-CDS-H-paniculata_contig6980:6046..6087Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6980 6047..6087 -
1691481475.6562142-CDS-H-paniculata_contig6980:6046..60871691481475.6562142-CDS-H-paniculata_contig6980:6046..6087Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6980 6047..6087 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6980.14920.1

>prot_H-paniculata_contig6980.14920.1 ID=prot_H-paniculata_contig6980.14920.1|Name=mRNA_H-paniculata_contig6980.14920.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=472bp
MSKDMGADLLDCSRYGEVEDVEAILSSGVGADHQDKHGNTALHLSCANGH
PDVVRALIKAGATHLPNAAGNRPLQWAVQNKHEACVKVLLELFPTSSQMN
VLDKNGFGKSALTDAFMTGDAELVKMILNHKSAEEDMLLSQSSLGKDKDK
DQQQRTTRKDMSENSAAHVSALADDQGDAKSSVGGAATGEDDNSPSITHE
LGFGGARHSEESEEAGAPRELSFFMRELPIRNPDECFGDDPKEDTTGLCL
WGASVVLARWVASAELQKRLGEKSVLELGAGCGAGGISAAVHGRPASVVL
TDLNVETMANMAHNVELNRNQYQAGTEVRAETLDWEDESTWSAASPPFDV
VLGCDLVYQASVAPKLLHTIFSLLKPGGTFLHVCPVGGERDGLEEFLADL
GVVEAGKGEAGKADGTGRRSNDSGFELVSVVDAPAEYAQNPLVSGSEEEY
LLHFNELPTTTYRLMECRKRL*
back to top

mRNA from alignment at H-paniculata_contig6980:62..6152-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6980.14920.1 ID=mRNA_H-paniculata_contig6980.14920.1|Name=mRNA_H-paniculata_contig6980.14920.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6091bp|location=Sequence derived from alignment at H-paniculata_contig6980:62..6152- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTCCACCTATGCAGCTCGAAACACCGACCATACTGATGGTCTCGAGCTG GCTGACATCGGAGAGATGTCAAAGGATATGGGAGCTGATCTTCTTGACTG CTCGAGGTGAGTATATATTGCTCAAATAATACCCGCCAGTCTATGTTGTG GCGTGGAAGTCATGATGACGGCACCTGCGGTACAGTCCACCCAAGCTGCG TTTACTCCATGGAGTTGACCTTAATTGACAACACATGATATTATACCAAT GATCAAGGCTAAAGAATCCACTGTTTTCAATAATGAGTATGATTCGCTGC CATGCAGTGTAGTTTCACGTACACACAAGTGGAGAATGTATACCAGCAGG TCAAGAGTAACTGGCCGTAAAGTCATTAGACGACCAGTTTTTTGTGCACC GGAAGAAATTAATTGTGTCACGTTGTGTGGACATCGAACGCTGTATACCG ACATCCACATTACATCCATCAATAATGTCTTGCGGAGTTAATATATGCAC ACGGAAGAGGTAGCTGACAGAGAGCACATCCTTGACTCCATTCCACCACA GTATAACCTGCGTATTCATCGCCTTCTGTTTGGCAGATACGGTGAGGTCG AAGATGTAGAGGCTATCTTGTCTAGCGGGGTGGGCGCCGACCACCAAGAC AAGCACGGCAATACGGCTCTCCATCTCTCCTGTGCGAACGGACACCCAGA CGTCGTGAGGGCGCTCATCAAGGCGGGTGCGACCCATTTACCCAATGCAG CAGGCAACAGGTACCTGTAAATTGCTGTTGATGAATTAGATATGTTTGAC AGTTACATAACAGTGCTGGACGCAAACCAAATAGAATATGCAAAATTGTT AACTGTTCTGAGAAATGACCATCTATAATTGATCGTCACGAGATACTTGG ATACAAGAAAATCTCGAAATATTTCGAGCTGTCCATCATTGCACCCTCCT GACCACTACGACTATTTGCGACTAATCGAAAAAAATACTCGCCTAGGTTT CCGAATGTGCGGGCACATAAAGTCTAGTGTTGACCCCTATTTTTTGTCAT TACTAGTGTTGGGAGCACATTAGTCCAAGTTTTTACTCTGCAACTCAGGT GACTATTTTTTTTAATTGTTGCCAACAGTCGTTGTCGCCCGGGGAGTGCG TATTGTTTACCAGAGAAAAACTGTACCGCAGCTGCATAACGGAAGGGGGG CGGCGGGGAGGGCGGGCTGTCGTGGTCGTATATAAGGGTACTTATCAGCA CAAGAAGGTAACAGCCCTTGACCTAGACGTTTACTCACAGCTAAACAAAA CCACCCCCATGATCTGTAGAACGTATTGATGGCGTTGAGGGTTGTGCAGC TTGTGTTTGATATCGGAGATCCATGTACCAGAAAGGGGCCCGTTTTCGTT GTTAGCATCATTATTCAGTGCACTTCAGTGACGGGTCATTAGGCATCCTC GGAGAAGCAGCGCTGAAATGTCCTTCCTTCTCCCCGGTCTGGATTTCGTG ATGCGCGAAGACGCACATTTATTGGACCTCATGTGCACCTGCCCCTGCAG TCGTAGGGCGTAATGGCGTTTTTGACCTCGATCGACAAGAATTTGTCGAG CTCCTCACACGCGACTCATTTGAGATCTCTATTGCAGATCTTATCTTATA TATTGGTCAAGTAAAAATAAGGGGTTCCAACTATGGATGTCATGGCCCTA AATGAATCGTTCATGTCTTTTACTCCAGAAATTTAAGCTTAAACATAGCT TGCGGCTTGAATACTGGAGGATTACCCACACAACTTTTGAGGTGTGCACA GGTTCGAGAAGATGCCGGTAGTGTAACAAGCGAGAGTCGACGATCAGTAG TGTAGAGCTTTATCTACTAATCGACGGTAACTGTTCCCCGATATGCCCTT CCATTATCATTTCCTTTCTGCCCTCCTGTCTAACGCAAAAGGCCGCTGCA GTGGGCGGTGCAGAACAAGCACGAGGCTTGCGTAAAGGTGCTGCTGGAAC TTTTCCCGACTTCGTCGCAAATGAACGTGCTCGATAAAAATGGCTTCGGA AAGAGCGCCCTCACAGATGTAAGTGCGTTTGCGGTGTGTGGAACCTGAGG ACGTCTCCCGATAAATGTCACACTGTCCCCCGATTTCTCCCCCGTGTGGT GTTGTTCGTAGTGGCATCTACTTTACGGACTAAACCGAGGTTGACTGCTC CTGCCGCAGTCCCGCATGGATTCTCAACGTATTCTGTGTCTGCGGCATCT ACCTCCGCGTGCGACTGACCGAGCGACGGAACAAATTAACCATCGTCGTA TCGCGTTTGAACATTTCATATTCGCGTAGACATCCACGAAATAGGACGAC CTATCTGCTATTGAAATATTGATTAGAACCCACACTTACCGCAACCCCAA ACCAATATCACCGAAGCGAAATCGTCTACATTTACTCCTTGAACGAAACA AAATTCGGATACCAAATAAGCAGGCTTTCATGACCGGCGACGCCGAGCTA GTGAAAATGATCCTCAACCACAAGTCCGCCGAGGAGGACATGCTGCTCTC TCAGTCCAGCCTCGGAAAAGACAAGGACAAAGATCAGCAGCAACGAACGA CTAGGAAAGACATGAGCGAAAACTCTGCCGCTCACGTCAGTGCTCTCGCC GACGACCAGGGCGACGCTAAATCGAGTGTTGGCGGAGCGGCTACTGGAGA AGATGACAATAGCCCCAGCATCACTCACGAGCTCGGCTTTGGCGGGGCAC GGCACTCGGAAGAATCCGAAGAAGCGGGGGCCCCGAGAGAGTTATCATTT TTTATGCGAGAGCTCCCTATCCGAAACCCAGACGAGTGCTTCGGAGACGA TCCGAAGGAAGACACAACGGGGTTGTGTCTCTGGGGGGCTTCCGTCGTGC TGGCTCGGTGGGTCGCCAGCGCGGAGCTGCAGAAGAGGCTTGGGGAGAAG TCGGTCTTGGAGTTGGGAGCGGGCTGTGGTGCTGGGTGAGTTTTTTTTGT TTCCATTCATGAGTCAGGTTTCGGTTACTGAAGACCATTGCATGTAGAGG CACTGTGCTTTTGCGTGTCGTGCATGTACTGTTCTGCGGCATGTGTCACC AAGCTACACCCAATAGAGACAGCCGCGTCGCTGCCATGACTACCGCCATC TAGACAAAAAAAATGTAGCCCTTTCTCAGATGCTGAACTTTGCAGATGAG TAGTTGTCATCTGTATCGAAATTTAATTCTGGAATTGCCACCGTCTGGAG TCCTTCTTGGCCATGTTTTCTCAGAAACGATAGTTCTGGAGGGGCACAGC TGAAAACTCAGAGTTATTTTTGTCTTTGCTGTTGCTTCAGTAGCTTTCGC GCCGTGCACGGCGCCACTACCGAGCTAAGTATGCTTCGAGGCTTGTTCGA GACCAACTAGTGGGACTATAGCACTCAGCGCCCGCCTCTGCCTGCTTCTG TCGTGCTGGTATGCAGGGGAATATCTGCAGCGGTGCACGGCAGGCCAGCG TCGGTAGTGCTAACGGATCTTAACGTCGAAACCATGGCGAATATGGCGCA TAACGTTGAGCTCAATCGAAACCAGTATCAAGCGGGGACCGAGGTATGTA CGCCTTGTCGAAGGTGCACCTTGCCAGATGCCACAGCCTGCTATCTGTAC AGAACAGCCACCGAAAACGACGATGTATATGCATTCGGTGGCCCCATTTA ACGCACACCGCTTTCAGGTGCAGGCCCACTTGAGAGTGCCCAGTTTTCCG TTTCATGAATCAAACAAGCTGTACACACGATAATAGATGCATACTTCCTG TGTGTCATTTTGAAGTCGGCTGTTTTTGGCAGGTTATATCTCCAGGTTTA AGACTGTTCAGAGGTTGCAGTTGGGATCGTTGGAAAGATAAAATATGATA GTTTTTAGCGCTATCCCAAATTGCATCCCGATTTATGTATCAGGAATAAC GGCCGCTCAAGATTGGGCTGATTTTAAGATTTTGTTTTTTCGATTTTTCC GTTTTTTTCGTTGGGAAATTTTCAAAAGGGCAAAATATTACCTCTTTTTG GTCGATTAGTTTCATTTGCACAGCGCTCACACCCGATGGACTTCGTCGGT CTCGGCGAAATGTGGGGATTGAACCCTAAAAACATGTGAAATTCTACTTG GAAGAAAGAACCAAAATGTCAAAGTGCTTATAAATAAAACTGTCTTTACT TTGGCACAGAGGAAGTACCAGGTACATGATGGATAAAATCTCATTAAATG ACCTGTTATTTCATGTATCACATTTTTACGGCGCGCGTTCAGTGGGTCTA CAAGTGGACCATCGACTGTATGTGCCGGGCTCGTTTAGGCATGGCAATAA CACAGAGTAGGTCTTAACTCTGCCCCGTTGTTTGGGGGTTAACGTTCATT TACTTGAACTCGTTTGTGTTAGCTATGCGCACCGCTGTTTATCGTGCGGT TGGCACACGTTCGCGCGTGTACATCGTATGCTTGATGGAAACGCGCATGT TTCCGTAGATGGAGATTACAAAAGCGAGTGCACTTGTGAGTGAGTGGATT TTTTTATCTGCGCGCTTTCACGTAGTGCCTCTGACCGCGGGTCTGAGCGA TTCGACTCATGTGTTGAACAAAACCAAGAGTATTAACGTAGAGGCCCCGA TTACGCTCGCGACACCAAGCTCGAAATCTTCGTCACGTTCCGTTTCGAGG TATCTCCTATTTTCTTTTCCTTCTTGTCTCCTTCGTAGGTCCGCGCGGAG ACGCTTGATTGGGAAGACGAATCAACATGGAGCGCGGCGTCACCACCGTT CGACGTTGTCCTGGGCTGCGACTTGGTCTACCAAGCTTCCGTCGCTCCTA AACTTTTGCACACGATATTCTCTTTGCTGAAGCCTGGGGGTACGTTCTTA CACGTTTGTCCTGTTGGCGGCGAGAGGGATGGATTAGAAGAGTTCCTCGC GGATTTGGGCGTTGTGGAGGCGGGGAAGGGGGAGGCGGGTAAAGCGGACG GGACGGGGCGAAGAAGTAATGACAGCGGGTTTGAGCTGGTTTCGGTGGTT GATGCCCCTGCAGAGTATGCGCAAAATCCTCTGGTGTCAGGGTCGGAAGA GGAATACCTCCTACATTTCAACGAGCTGCCAACAACGACGTACCGCCTCA TGGAGTGCCGAAAGCGTTTGTGACCGTTTAGGTTTCAAGTTTTATTTGAG GTTATTGCTGTCGGTGTGTTAGCAACCGTGTTTCAAGTTATTTCTTCTTC TTTTTTCCCCTTATATAAACCCCGCCATTTTTGCACAAGTCGGATTTTCA CAGCTGAAGAAATGTGTCAGTACTCTGTCCTTTGACCGTTGCTGCGAGTA CTAGTAATCTCGTGTGGTCCCACGCTGAGAATTATATGGGTAACAGTCGA TACCGTGTATTGTGCTTGAACGTTCCGGCCTATATCCATCTTGACGCTCG TTTGTTTTCTTGAATTTGTGGTACGGGATCACTGCGGGCGCGCTTGTCTG ACTATGTGCCTTTTAGCACATTGATGGCGCCATCTGTCGCGCGTTGAGCA GTGTGCTTTTGCGGGAGCGTGGACGCGATATCCAATTACACCACATCGTT GGGGTACTCGCTGGCAATTTGACTGGCTTGCCTCAAATGCGGTTTCCATT CTCGTGCTTGTTTGATTTGCGAGCGATGCAAACCATTATGGTTTCGCGCT CGCGATTATTTCACAATGTGGATGACTGGGAAAACACGTTTCGGGGACTC GGATAGCCAGGTGTGCGTTGCGAAGTTCCTTATTTGACGCCACGAGTGGC CTCGGCATGGCGCGGTTGTTCGTGAGATGCTGCCAATACAGACCACCTTC AAGTTCGACAGAATGTCAAAACATCGTGTGGGTGGATATTGCTGGTGCAT CCATTCCCAGAGGAAATAATCTGCTCTCCAGATCGAGGAATCACTTGGCA GTCCGTCGCCGTCGCGACGGAGTTTCTCAAGACAAGCGCCGATTTTGTGT TTTGTACTACGGTTTTTGATGGCCTCAGTTTTTTATCAAGTGTGTGTGCC GTTTAGGCTCCGGCTTGGAGTCATCCTACGGTAGGGGGAGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig6980:62..6152-

>mRNA_H-paniculata_contig6980.14920.1 ID=mRNA_H-paniculata_contig6980.14920.1|Name=mRNA_H-paniculata_contig6980.14920.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2832bp|location=Sequence derived from alignment at H-paniculata_contig6980:62..6152- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAAAGGATATGGGAGCTGATCTTCTTGACTGCTCGAGATGTCAAAG
GATATGGGAGCTGATCTTCTTGACTGCTCGAGATACGGTGAGGTCGAAGA
TGTAGAGGCTATCTTGTCTAGCGGGGTGGGCGCCGACCACCAAGACAAGC
ACGGCAATACGGCTCTCCATCTCTCCTGTGCGAACGGACACCCAGACGTC
GTGAGGGCGCTCATCAAGGCGGGTGCGACCCATTTACCCAATGCAGCAGG
CAACAGATACGGTGAGGTCGAAGATGTAGAGGCTATCTTGTCTAGCGGGG
TGGGCGCCGACCACCAAGACAAGCACGGCAATACGGCTCTCCATCTCTCC
TGTGCGAACGGACACCCAGACGTCGTGAGGGCGCTCATCAAGGCGGGTGC
GACCCATTTACCCAATGCAGCAGGCAACAGGCCGCTGCAGTGGGCGGTGC
AGAACAAGCACGAGGCTTGCGTAAAGGTGCTGCTGGAACTTTTCCCGACT
TCGTCGCAAATGAACGTGCTCGATAAAAATGGCTTCGGAAAGAGCGCCCT
CACAGATGCCGCTGCAGTGGGCGGTGCAGAACAAGCACGAGGCTTGCGTA
AAGGTGCTGCTGGAACTTTTCCCGACTTCGTCGCAAATGAACGTGCTCGA
TAAAAATGGCTTCGGAAAGAGCGCCCTCACAGATGCTTTCATGACCGGCG
ACGCCGAGCTAGTGAAAATGATCCTCAACCACAAGTCCGCCGAGGAGGAC
ATGCTGCTCTCTCAGTCCAGCCTCGGAAAAGACAAGGACAAAGATCAGCA
GCAACGAACGACTAGGAAAGACATGAGCGAAAACTCTGCCGCTCACGTCA
GTGCTCTCGCCGACGACCAGGGCGACGCTAAATCGAGTGTTGGCGGAGCG
GCTACTGGAGAAGATGACAATAGCCCCAGCATCACTCACGAGCTCGGCTT
TGGCGGGGCACGGCACTCGGAAGAATCCGAAGAAGCGGGGGCCCCGAGAG
AGTTATCATTTTTTATGCGAGAGCTCCCTATCCGAAACCCAGACGAGTGC
TTCGGAGACGATCCGAAGGAAGACACAACGGGGTTGTGTCTCTGGGGGGC
TTCCGTCGTGCTGGCTCGGTGGGTCGCCAGCGCGGAGCTGCAGAAGAGGC
TTGGGGAGAAGTCGGTCTTGGAGTTGGGAGCGGGCTGTGGTGCTGGGCTT
TCATGACCGGCGACGCCGAGCTAGTGAAAATGATCCTCAACCACAAGTCC
GCCGAGGAGGACATGCTGCTCTCTCAGTCCAGCCTCGGAAAAGACAAGGA
CAAAGATCAGCAGCAACGAACGACTAGGAAAGACATGAGCGAAAACTCTG
CCGCTCACGTCAGTGCTCTCGCCGACGACCAGGGCGACGCTAAATCGAGT
GTTGGCGGAGCGGCTACTGGAGAAGATGACAATAGCCCCAGCATCACTCA
CGAGCTCGGCTTTGGCGGGGCACGGCACTCGGAAGAATCCGAAGAAGCGG
GGGCCCCGAGAGAGTTATCATTTTTTATGCGAGAGCTCCCTATCCGAAAC
CCAGACGAGTGCTTCGGAGACGATCCGAAGGAAGACACAACGGGGTTGTG
TCTCTGGGGGGCTTCCGTCGTGCTGGCTCGGTGGGTCGCCAGCGCGGAGC
TGCAGAAGAGGCTTGGGGAGAAGTCGGTCTTGGAGTTGGGAGCGGGCTGT
GGTGCTGGGGGAATATCTGCAGCGGTGCACGGCAGGCCAGCGTCGGTAGT
GCTAACGGATCTTAACGTCGAAACCATGGCGAATATGGCGCATAACGTTG
AGCTCAATCGAAACCAGTATCAAGCGGGGACCGAGGGGAATATCTGCAGC
GGTGCACGGCAGGCCAGCGTCGGTAGTGCTAACGGATCTTAACGTCGAAA
CCATGGCGAATATGGCGCATAACGTTGAGCTCAATCGAAACCAGTATCAA
GCGGGGACCGAGGTCCGCGCGGAGACGCTTGATTGGGAAGACGAATCAAC
ATGGAGCGCGGCGTCACCACCGTTCGACGTTGTCCTGGGCTGCGACTTGG
TCTACCAAGCTTCCGTCGCTCCTAAACTTTTGCACACGATATTCTCTTTG
CTGAAGCCTGGGGGTACGTTCTTACACGTTTGTCCTGTTGGCGGCGAGAG
GGATGGATTAGAAGAGTTCCTCGCGGATTTGGGCGTTGTGGAGGCGGGGA
AGGGGGAGGCGGGTAAAGCGGACGGGACGGGGCGAAGAAGTAATGACAGC
GGGTTTGAGCTGGTTTCGGTGGTTGATGCCCCTGCAGAGTATGCGCAAAA
TCCTCTGGTGTCAGGGTCGGAAGAGGAATACCTCCTACATTTCAACGAGC
TGCCAACAACGACGTACCGCCTCATGGAGTGCCGAAAGCGTTTGTGAGTC
CGCGCGGAGACGCTTGATTGGGAAGACGAATCAACATGGAGCGCGGCGTC
ACCACCGTTCGACGTTGTCCTGGGCTGCGACTTGGTCTACCAAGCTTCCG
TCGCTCCTAAACTTTTGCACACGATATTCTCTTTGCTGAAGCCTGGGGGT
ACGTTCTTACACGTTTGTCCTGTTGGCGGCGAGAGGGATGGATTAGAAGA
GTTCCTCGCGGATTTGGGCGTTGTGGAGGCGGGGAAGGGGGAGGCGGGTA
AAGCGGACGGGACGGGGCGAAGAAGTAATGACAGCGGGTTTGAGCTGGTT
TCGGTGGTTGATGCCCCTGCAGAGTATGCGCAAAATCCTCTGGTGTCAGG
GTCGGAAGAGGAATACCTCCTACATTTCAACGAGCTGCCAACAACGACGT
ACCGCCTCATGGAGTGCCGAAAGCGTTTGTGA
back to top