mRNA_H-paniculata_contig698.14919.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig698.14919.1
Unique NamemRNA_H-paniculata_contig698.14919.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig698.14919.1 vs. uniprot
Match: A0A6H5KLC2_9PHAE (FHA_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLC2_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 7.800e-64
Identity = 132/270 (48.89%), Postives = 157/270 (58.15%), Query Frame = 2
Query:  302 PPRRADTPCPAALL---QQQPATVGEAQCYRRGGNGSRSLGNSISGSAAFVLLPDGGFANRRYIELGAGTT-VVGRCKSSGIRDHHVSRRHVEVTVPEEGKDGSTEGCCRIKYIGRNCRVVLVGGVLLKAEQEVMAPPGTQVILNFNNKGLPRYSYTLVPAHRLPFLT---ATMTMGRRVA-SGNASRWRGT------------------------GPSQCRINKRPTR----------------FRKEAQDKLQQERDEIFSRFADLKF 967
            P RRA TPCPAAL    QQQ  ++G                         +LLPD    +RR+I L  GTT VVGRCK SGIRDHHVSRRHVE+T PEEG +G  +G CRIKYIGRNCRVVL+GG+LLK+ QEV A PGT+V+LN+NNKGLPRYSYTL+PA+ LP  T   A  ++G   A +G+   WRG                         G +      RP+R                FRKEAQ+KLQ+ERDEIFS+FADLKF
Sbjct:   50 PIRRAGTPCPAALRWRRQQQDGSIGR-----------------------LILLPDRAETSRRFIPLEPGTTTVVGRCKKSGIRDHHVSRRHVEITAPEEGDEGFAQGHCRIKYIGRNCRVVLIGGILLKSGQEVPAAPGTRVVLNYNNKGLPRYSYTLLPANNLPATTPRTAHCSVGMGAAGAGDGRPWRGGPVSSSHRLGDSDMEMGSGRKQPFHGDAHLHAYNRPSRYSTIASKQQRPRPGGRFRKEAQEKLQKERDEIFSKFADLKF 296          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig698.14919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KLC2_9PHAE7.800e-6448.89FHA_2 domain-containing protein n=1 Tax=Ectocarpus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig698contigH-paniculata_contig698:2429..10875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSMAD/FHA domain
Ec32 orthologEc-06_004470.1
Exons5
Model size1059
Cds size726
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930838.9719129-UTR-H-paniculata_contig698:2428..25141622930838.9719129-UTR-H-paniculata_contig698:2428..2514Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig698 2429..2514 -
1691481475.488945-UTR-H-paniculata_contig698:2428..25141691481475.488945-UTR-H-paniculata_contig698:2428..2514Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig698 2429..2514 -
1622930839.0736103-UTR-H-paniculata_contig698:10628..108751622930839.0736103-UTR-H-paniculata_contig698:10628..10875Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig698 10629..10875 -
1691481475.5544682-UTR-H-paniculata_contig698:10628..108751691481475.5544682-UTR-H-paniculata_contig698:10628..10875Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig698 10629..10875 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930838.99003-CDS-H-paniculata_contig698:2514..25711622930838.99003-CDS-H-paniculata_contig698:2514..2571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig698 2515..2571 -
1691481475.5018673-CDS-H-paniculata_contig698:2514..25711691481475.5018673-CDS-H-paniculata_contig698:2514..2571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig698 2515..2571 -
1622930839.0031416-CDS-H-paniculata_contig698:2945..31251622930839.0031416-CDS-H-paniculata_contig698:2945..3125Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig698 2946..3125 -
1691481475.5132282-CDS-H-paniculata_contig698:2945..31251691481475.5132282-CDS-H-paniculata_contig698:2945..3125Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig698 2946..3125 -
1622930839.0222588-CDS-H-paniculata_contig698:3642..37701622930839.0222588-CDS-H-paniculata_contig698:3642..3770Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig698 3643..3770 -
1691481475.523571-CDS-H-paniculata_contig698:3642..37701691481475.523571-CDS-H-paniculata_contig698:3642..3770Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig698 3643..3770 -
1622930839.041994-CDS-H-paniculata_contig698:4149..42491622930839.041994-CDS-H-paniculata_contig698:4149..4249Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig698 4150..4249 -
1691481475.5333598-CDS-H-paniculata_contig698:4149..42491691481475.5333598-CDS-H-paniculata_contig698:4149..4249Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig698 4150..4249 -
1622930839.0584226-CDS-H-paniculata_contig698:10367..106281622930839.0584226-CDS-H-paniculata_contig698:10367..10628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig698 10368..10628 -
1691481475.543616-CDS-H-paniculata_contig698:10367..106281691481475.543616-CDS-H-paniculata_contig698:10367..10628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig698 10368..10628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig698.14919.1prot_H-paniculata_contig698.14919.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig698 2515..10628 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig698.14919.1

>prot_H-paniculata_contig698.14919.1 ID=prot_H-paniculata_contig698.14919.1|Name=mRNA_H-paniculata_contig698.14919.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=242bp
MALTVMDVVDWQPEKTVEPPRRADTPCPAALLQQQPATVGEAQCYRRGGN
GSRSLGNSISGSAAFVLLPDGGFANRRYIELGAGTTVVGRCKSSGIRDHH
VSRRHVEVTVPEEGKDGSTEGCCRIKYIGRNCRVVLVGGVLLKAEQEVMA
PPGTQVILNFNNKGLPRYSYTLVPAHRLPFLTATMTMGRRVASGNASRWR
GTGPSQCRINKRPTRFRKEAQDKLQQERDEIFSRFADLKFA*
back to top

mRNA from alignment at H-paniculata_contig698:2429..10875-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig698.14919.1 ID=mRNA_H-paniculata_contig698.14919.1|Name=mRNA_H-paniculata_contig698.14919.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8447bp|location=Sequence derived from alignment at H-paniculata_contig698:2429..10875- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCAACGCCAAACTTTTGTTGTGCACTATTTTGTCTTCGGAAACAGAGAA AACGACCAACCCTAAACATCAATTCAGTTCACGATAGAGAGAGAGGGGCA GAGATAGAGGCAAAGACACGGAGAGGGCTACACAATACCTTGACTCTTTC CAAACCTCTTCTACCATCACTCTTCAGAGTCCTGCGAGCACACGCTACGC TTCCTTTTTGCTGTCTTCTGGGTGCAGCGTGCACAAACATTGTGTGCATG GCACTTACTGTTATGGACGTCGTCGACTGGCAACCCGAGAAAACGGTGGA GCCACCACGACGTGCCGACACGCCCTGCCCAGCAGCTCTACTACAGCAGC AGCCAGCAACGGTTGGTGAGGCACAGTGCTACCGGCGAGGGGGAAATGGT AGCAGAAGCTTGGGAAACAGCATTTCGGGGAGCGCGGCCTTCGTGCTGCT GCCGGATGGAGGGTTTGCGAACCGCCGGTATATTGAGCTTGGTGCTGGAA CGACCGTGGTGAGTTGGTGGGGGTAAGATTTTTTGGGGGCACATGCGATT GGTTGTAGCGCGAAAGGTCATCGGTGTGGCTTCTGTCTCTCTGCCGTATG TTCCGCACGGCTTCAGTTATGGCGTCTGCTGTTGTTTGCTGAATGAATCC TGTTCACTACCTCCAGGCGGAGTTTGTTATTTGAGGGGTTTCGGTTTTTC GCACGATGATCGTATTTTATCCGTTTTCTTTTGTGCGGCTCACCAGATAT TTGTTGAAAGAGTCGAAAAATTGCCCGTGTTCACTAACACTTACTGGTGC CATGGTCTCAGTTGTGCCACAATCATGCCACCAGACGGCAACGCTCTCTG GGCCATCGCGTTGTGGTAGTTCCATTTCGTGATAGGCTTCAATGTGCTGG GGTCGTCCTCTTCTCTCCCTCTGCTCCCCCCCCGTTCATATATTTCTTAT CACGTGCCAAAGAAGTAGAATGTATCCAGCTGTAATGTTGGTAAAATGTA TCTAGGTGTAATGTTGGTTGTAATTTAATCAGCGTCTTTTGAACCTCCGC TGGGTTGAACCATCCCATGCGAGCACGACCTCCACAGTCCAATGTTGACA AGGGAACCTTTCGCGTATGTTGCTGTTCCCCCCTCACTCCAGTCGCCTCC GTTGCCGCCGCTTCTCTCCTAGTGCTCAATGACACCTACCTCTCACACCA TCGCTGTAAAAAGCTTTCGCTGGGGGGGGCTGGCAGCCCAGCAGTGTTTC ATTGTGTTGCTTCAGGGGCGGTGCAATGACAGAGTTCATAGATGTGGTTA TCTTGGTTTGAGTCTTTCATCGTCAGCAGTGTTGTTTCAGACAGCTTTCA GGTACCCCCCCCCTCCCCGAAGTCCAAGGGCTACGTTTGACGTGCCTCGG CACGGCACGCAACGCACACTGTGGGATTTTCACTCGGTGTTGTTTTCTCA AATGTGGTGGCGTGCTTGCTGTACCTATTTATGGGTGTCATCAGCTGCTT AGGACCCAGACGAGGACATGTCGATCTGTCTGTTGCAGCTGTGTGACCGA TACTCGGAAATCTCGAGTCGTTTTCTTCATGTCAGTTTTTGGTTATCATT CCATCTCCTGAAGTGTACAACCCAAGATACATGAAACGAACGCAATCCGT TCTCTGGGTTGGACCTGAATGATTATCCCACTTAAAATTACTCCCAGATC TGCACCTCTGTATGTATTCGAACAGGGTGCGTACTGCGAAGAACAGGGCC CTTGTTGTGAATTCGTGGATACTGTTTCAGGGAAGTGCTAGGGTGTACTA TACTGTGTACCTATCTGTATGATCTGGAGGAGACCTGGAGATGTAATATA ATGTACTTGGTGATGTGGTGGACAGACCCTTGCTCGGCTATTCGTTAGTT CTTTCGAAGAAATTACAAATGGTCGCAGATGGTGTGCTGTTGGCTACACT GCATTCTCTGATTGCCACTGCTGTCTGTTTTCTGAGGGCATTGCGTCTCT CTTGGAATGTTAGTACTTGCTCAGATATTTTACACGTTCAACCTAGGGGG TAGGTGGGTCCGTTCTAGGTGGTTTGAACGGTCTGAGGGGTTACGCGACC CCGCCCGCACCCAACCAAATTTGCTTTCTCTACATTTCCGTGTAATAAAA GGGCTAATCGGCAGCAGCAGATTCCTCTTCCCCTTTCGCTTCTTCTGTCT CCCTATCGGCACGCAATGCGTTGTGCACCAGTTTATTCAAGATGTTCCGG ACTAAAGATTGCTGTATGCGGCAAAAATAACGTTACTGTTTGTATGTGGA GAAACAAGGATCTTTGGAGGTGAAACCTGAAAGCGTTAGCCGTGGGTAGT CAATCAAGAAAGAGACCACGGTATATTCATATATGGATATACTCCTACAG TACTAGTATATATCCTCCTGAATAATATGCGTCTACACCAATGAATGTAT AAACAACACCCCGATTGCTATGATGCCACCGAAGCGCCTACTTGCTGTTG TACCTAGCTGCATACCAATACAATGACACAAAAGTATGTACACCTTTCCA TGAATCTTGGTTCGTACATGGTTATGCGTATTTGATTGAGTGTGGTAATC GATATGATTTGTACTGACTGACTATCACATCTTCGATGAGCACGTCAGCC AGTTACTTCTATGGCACTCCGGAATACCCGACATATGCTTTTAGCGTTTT TTACGGATGAGGCATACTCTCGTTCGTCAAATAGTTGGTCGGCAAAATTC GTGGTTGCGGATGATATGGTTGTTCCGACGATTGTCTGTCTGTAGTACCT TTAGCTGGCTGACACCCCCAAAAACCCCAACAGCTTTATGTATGGAGTGT ACGCAATCTTCGCGATGTCAACGGTTTTGGAGATGACATTGAGTATGCGC TCGATTCGGTAAAATAATGTAATGTGTTGTATGTGACTCATCCGATATTT TCGTTTTTCAACAAACAAGCCGACCGTCCTCCATGACATGAACGGATGCA CTACAGCAGGCAGGTTCACGGTAGGATCATTTTTAGTATGAATAGTTTCG GTCGTTTGAATCCTAATCCTCTCCCGCTATTATTGTTTTTCGAGCACAAT TTTCTTGACATTGATGGCACTTGTGACACGGATAGTGGTATCGGTGGAAA GATCTTGTTGAGATCTCTCCACTGTTGTCGAGAACATCGGGCTTCAAAAA TAAATAGCGAGCGGTGCGATGTCAAAGGATCTTATGAGTATCGTGCTTTG TTGTGTGGAAAGCAAGCTGGCTGGTTGGGTCCTCCCGTGATGATTATTGG AGGGATTTGGTTTAACCCGTGGTTGATAAGGGGTTCGCTTGGGACCGTTC TGTTGTGAATTACGTATCCATTCAGCAGTAGTTGGTAGATATCTGATAGC CCTCGTCCGTAAGTGCTGCAAGTGGGTAGGAGGTCTGATGATGTAATAGT TGTAATACGAGTGCACACTAGCAGAATGCACGATAGTGATGATATCTCTG TCTCTTCAATTCGCAACGGCTACGTCCTTGTACTAGAAGTACGTCTATGG TGCAGCTTTTTTATTGCTCAGTCCAAGACTACAGTTGGAGAATATGGTGT AGAGTGCGGACCGCAGTTTTAGACAAACGCCGCAGAGGGCTGTGGGGATT ATGTGGACCTTGACTCTGCCTCACATCGGCAGCACGGTAGAGGCGTGACC AGCATCAACCCATGTACACAGACTCCGTACTCGAAACAATAAAACAACCC AAATCGTTCATGTTCTCATTGGCAGATATTTGGATTAGGGTTATTGCGTA AAAGAAAACGGGCCCATTTTTCTGTTGTTCCTCTGCTTTGTAGTTGTTTT GTTCCATTCGGTGTCGCTAATTTAGAGGCTAAACGAGTGTGCGATGGTCC TTGAATAAGATCGTATGCTGTCCTTGTATTTCAGCAGTTCTGTAACATGA CGGGTCTACTATCTGATGTCATTTATTTGGAAACACATTCAGTACGTCTT GCCCCGAGCTTTTCAGCAGACAAGATGCTCCGCTCCCCAAGCGACGGGGC CAGATAAAAAAAATGCCGAAGTATAAAATGTGTTTCAGAGACTGACTGTA CCGACAATAGCTATTTGGTTGTCCTATCGGTCACCGGTCATCTTCTGAAC AGGCGAAAAAACTTCGTGTGGTGAAAGACAATCGTTTCCGCAGAGCGGTT CAGAAGACCCGTTGTGTGAAATCAAGTCACAATACTTGGTTGGGAAAAAA GAGTGCTATCCACTGGTAGTGTACATGACATACTGGATAAACCGTGAAAA CTTGATGGGATCTTCCGCCCAAGAGTCCAAAATTGCTATAAACGACCACC AAACAAAACAAAAAATAACAGCCGACATAATTATGGCTATTTTGGGGGCT TTTTGTTATTCCGGACCGCTCTATCTAAATAAATACACCACATGGCTTCG AGGAATGTGTGTATTTTACAGTCAGTACAACGCAGAATACATACCAACGG CCCGTTCCTAAATACTGTCTGTGTACGTGGAACACATAAAATAGACCGAG AACAACTGCTACTGTTGATTATCCTGCCCCGGATTTCGCAACTGGAAAAT ACTTACATACGTAACACTATTTATGTGAATCAGATATAAGAATATTTTGA ACTTTTTTCGTTTGTTTTTTTTCGCTTCTCTGTTAGGTGGTCCGCGAGTA TTACACCGCATGCTAATATATACATATAGATGCGTCACTCCCAGACGTCG GGAAACATATCTTGTCGATGTATGTCGCTCGGTCGGGTGACGATTCAGAC GTTCGACGAGAAGAGAGATCTTTAAAATATAGGGCGTGATGAAGTAGTAA TGATTGGCGAAATGCTGGTGCAAATGTATTTCTCAACCTCCAGGTTACAA AAGAATCAGTTCGTCTTTTCACGCAGCTAGAAAATCAGATATCGAGCATG TATTGTAAATGATAAGGCTATGTCCTATGGTGTAAAAAAAAAAGAGTTCC AATCAAAATCATAAAATTCCATTTTTTTTCACTGTGAAATAGAATTGAGA AAAATTAATAGCTCATCTCATGGGACGGGCTTGAGTCAAAAATATCATTT TTATTAGTTAAACGTTTGATCGCGTTTTGCTAGCGGTGCAATTAAGTTGA AAGAACTTCAACCACACAAGTTCTCGTCGAGCACACCCTCTTCCTGTGAA AGTGGACCACCATGAATGCATCATCCACCGCGCAATGTTTTATCAAGGCA AATCCTTGAATGGAATGGGTATGTAGAGAAATGAGGACTCAGGGATCACA TTCGGGTGTGTGCAAGACACAGTGGATCATTTGACAGAATGTACCACAGT GGTTCGGTTTTACGTCTGTTATGAAGGACGGTGGAACCCTCCCCCTGAGC GAGAGGTACAAGGAGGCGGTGCAGCTATGCAAAGATTTCGCCATTGATAG CTTCTTCCGCTACGTGGAGGAAACCCCCGAGCTGGATCTCCCTGGGTGGG CAACTCAGTCTGTTCGGAGAGATGGCAAGCGCCGCTGCACCCATGCGTCG TTTGCGTCTGTCGTCTTCGTCTAGAATATCGACGGCCGCCACTACAGCAG CGAGCGCCGCCGATATGAATGATTGCTATTCCTGCAGATTTTCCATAAGG CGGCTCGGCTCACACCTTGGATTGTGTACGTGCTTCGTACTGGCATCTGT TACCAGCGCGGGTGTTTTACTGTGGGCTATGAAACATCATCCAGGAGAAC ACGCCTGTGTATCTCATTGAAGTCCCATTTTTATGGTTTTGCGGGGATCT CATCCTCCAGTCCAATTTTGCGATTTTTTTTTACTCGGAGAGCTGTCGAT CCTCCCTGATCACAAAAATCGTGTAAAAAAAAACTATTTTGTTGACCCCA TGAAATGATGGATAACAAATCTCCAGTAAAAACACGTTGAATTTTATGAT TTTGACTGGAGTTTTTTGACACCATAAGAGATGGCCCTAGGGTACACACC ACCAATGTATTTTTCGCTTTCTCGGCCGATATCTGTACTTGTAGAATAGA GCTTTTTTTTGCATCGTGAAAGCGTTACCAGCAGCGACCAGCGTTCGAAC CTTTAACATTTTACCCAAACCAGTTACACGCCCACGAGCATAGCCAGTAT CCATGTTTTGTGGAAAATCTGGCGGCAGTCGGGATTTTTTCGCCCTCGAT AAAAAAATACAAGACCTCGGCGAGTCAATTCAATTTTTTCCGTTGAGTTT TCTTTTGTTAATGATTAAGGCACGGTCTATCTGTATTTCTCCTTTTTTTT CTTTTTTGTTTAACCGCCGGAAGGCTAAAAGGCAAAAACCTTTATCCGAT GCTTCCATACTTGAGTGTTTCTACATTTCCTGTAACAGAACAGAGTTATT TGTTCCTCTGCGGGGTGGGCGCCACCTCGGTTCGGCCGAACCAAGTAGGC AGTGTGGGGGTTGCACCCACTAAAAGACCTCTGACTAGACTCTCAGTCAT GCTCAGTTCACGAGCTACCCTACCCATTCGGGCGTAGGTCGGTGATGTAT CTCTCCTTTCGCTTGGTCTAAGCTCGGTTACTTGCTTTTTTGTGTCTTTT GTCTTGTCGTTTTTTAACCTTGTAAGGTGGGAAGGTGTAAGAGCTCCGGA ATCAGGGATCACCACGTGTCTCGGCGTCACGTGGAAGTGACGGTGCCGGA GGAAGGGAAGGACGGGTCCACAGAAGGTGTGTCCAGTGTTTTGATTATTT TTTTTACAGCTGATGGGGACAATGAACACATGGTGATCGAGTGTCGTGGA ACCCGCATTTAAAAAATATATCACTCCTCAGTGTGCAGGATCTATCGGGT AGTAGTCTGTGTACTGTGTACTGGAGGTCATGAACACTAGAAACGAATGG ATGAAGAAAAATGATGTTTTTTTAGGATTGAGGTACGACTGGATATTGAT GTAGATTGTGGAGTAGGGTGGCTTATTTTTCCTCGTCACTTAGTTCTGCT GCCAAATCTGGGGGGAAGACAGGCTGGTGTGTTTATATATGATCACCCGC TGTTTTTATTACACTTTTCAAGTCGATGGTCGTGTGCGTTATGCTTTGTT TGCAGGTTGCTGCCGTATCAAGTACATTGGCCGCAATTGCCGCGTTGTGC TGGTGGGAGGTGTACTGTTGAAGGCGGAGCAGGAGGTGATGGCTCCGCCA GGCACCCAGGTCATCCTCAATTTCAACAATAAGGTGTGTTGCTGCTTGTG GCTATTGCCGTTGTTTTTGTTGTTGTTCTGGTGCTGCGGCCTGCAGCCTC ATGTCGCGTTGTGTCATGAATAAAAGGAAGGGGAGTGTAAACCTCCGCTA ATTTACACCCCAAATCAAACCATAGAATACTGATTGTCTTTTCTTTATAT GCGGCTAGATGCTTTCGGCAAAGTTGAATACCTCGCACCCCCCAGCCCCA ATGTAATGTAGCATTGTGATACTTTGGTCGGTTTGACTTTTGTTTGCGGA CTCATTAGGCGGATTTTGCCTGTTTTGCTGGGGGGTTTGGGGATGGACAA ATGTATATATGTATTATTGAGGTATTCCTTGCTAAGTAGTAGACCATCCT ATTGAGTTTATGCCACGTCACACAAGGGGGATGAAGCTGTGCTCCCTGGT AGATGCAGTACCCCACGTGCCATTTTGATTCCAAGTAATTAGCCGTCCGC ACCTGTACCACCCCCCGTCCGTCCGTCCGTCTGTCCCCACGGTGACGCAG GGCCTCCCACGATACTCGTATACGCTCGTACCCGCACATCGCCTCCCTTT TCTTACAGCCACCATGACGATGGGGCGCAGAGTGGCGTCCGGCAACGCAA GTCGGTGGCGAGGCACAGGCCCCTCCCAGTGCAGGATCAACAAGCGACCA ACGCGATTTCGAAAAGAGGCGCAGGACAAGGTACGTGTGGTTTGGGGTTG GGTCCGCTGAGTCAGCATACGTGATTGAGAAAGATTTTTATTTTCTATTG CGGAAATTTTTTCAAGCATGCGATGGTGCGCGCGAGTCGGACAGTCACCT TTTTGACGTTTTAGTTATTTGTGTATGTACGTCGCCAGCCAGAGGTCGTT TCTTTGTGCTGACTATAACTCCACCCCCCCACCCCTGATTCTGTTGGTTT GTGGAATCGGACGTCATCACTATGCAGTATAACTTACATAGGTATTCATG TACGCATGTTTTCTGCTTGCATTTGCCCCTTTGCCCATATTTGTTACCCA CCCACTCACGCCCACCTCTCTTTTCTTTGTTCGCTAACATTTTTTTGAAA TCAGCTTCAACAGGAACGAGATGAGATCTTCAGTAGATTCGCAGATCTCA AGTTCGCCTGACGGAATTACTGAGAGGGAGCCCAGCAGTTTGTGTTGCTC GCCCCAGAGAGGCGGGTCGGTGGGAAATATAGCCAGGGCAGGCGGGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig698:2429..10875-

>mRNA_H-paniculata_contig698.14919.1 ID=mRNA_H-paniculata_contig698.14919.1|Name=mRNA_H-paniculata_contig698.14919.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1452bp|location=Sequence derived from alignment at H-paniculata_contig698:2429..10875- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCACTTACTGTTATGGACGTCGTCGACTGGCAACCCGAGAAAACGGT
GGAGCCACCACGACGTGCCGACACGCCCTGCCCAGCAGCTCTACTACAGC
AGCAGCCAGCAACGGTTGGTGAGGCACAGTGCTACCGGCGAGGGGGAAAT
GGTAGCAGAAGCTTGGGAAACAGCATTTCGGGGAGCGCGGCCTTCGTGCT
GCTGCCGGATGGAGGGTTTGCGAACCGCCGGTATATTGAGCTTGGTGCTG
GAACGACCGTGATGGCACTTACTGTTATGGACGTCGTCGACTGGCAACCC
GAGAAAACGGTGGAGCCACCACGACGTGCCGACACGCCCTGCCCAGCAGC
TCTACTACAGCAGCAGCCAGCAACGGTTGGTGAGGCACAGTGCTACCGGC
GAGGGGGAAATGGTAGCAGAAGCTTGGGAAACAGCATTTCGGGGAGCGCG
GCCTTCGTGCTGCTGCCGGATGGAGGGTTTGCGAACCGCCGGTATATTGA
GCTTGGTGCTGGAACGACCGTGGTGGGAAGGTGTAAGAGCTCCGGAATCA
GGGATCACCACGTGTCTCGGCGTCACGTGGAAGTGACGGTGCCGGAGGAA
GGGAAGGACGGGTCCACAGAAGGTGGGAAGGTGTAAGAGCTCCGGAATCA
GGGATCACCACGTGTCTCGGCGTCACGTGGAAGTGACGGTGCCGGAGGAA
GGGAAGGACGGGTCCACAGAAGGTTGCTGCCGTATCAAGTACATTGGCCG
CAATTGCCGCGTTGTGCTGGTGGGAGGTGTACTGTTGAAGGCGGAGCAGG
AGGTGATGGCTCCGCCAGGCACCCAGGTCATCCTCAATTTCAACAATAAG
GTTGCTGCCGTATCAAGTACATTGGCCGCAATTGCCGCGTTGTGCTGGTG
GGAGGTGTACTGTTGAAGGCGGAGCAGGAGGTGATGGCTCCGCCAGGCAC
CCAGGTCATCCTCAATTTCAACAATAAGGGCCTCCCACGATACTCGTATA
CGCTCGTACCCGCACATCGCCTCCCTTTTCTTACAGCCACCATGACGATG
GGGCGCAGAGTGGCGTCCGGCAACGCAAGTCGGTGGCGAGGCACAGGCCC
CTCCCAGTGCAGGATCAACAAGCGACCAACGCGATTTCGAAAAGAGGCGC
AGGACAAGGGCCTCCCACGATACTCGTATACGCTCGTACCCGCACATCGC
CTCCCTTTTCTTACAGCCACCATGACGATGGGGCGCAGAGTGGCGTCCGG
CAACGCAAGTCGGTGGCGAGGCACAGGCCCCTCCCAGTGCAGGATCAACA
AGCGACCAACGCGATTTCGAAAAGAGGCGCAGGACAAGCTTCAACAGGAA
CGAGATGAGATCTTCAGTAGATTCGCAGATCTCAAGTTCGCCTGACTTCA
ACAGGAACGAGATGAGATCTTCAGTAGATTCGCAGATCTCAAGTTCGCCT
GA
back to top