mRNA_H-paniculata_contig6967.14905.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6967.14905.1
Unique NamemRNA_H-paniculata_contig6967.14905.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6967.14905.1 vs. uniprot
Match: A0A6H5KJ27_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ27_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 4.230e-39
Identity = 75/113 (66.37%), Postives = 87/113 (76.99%), Query Frame = 1 
Query:   31 GGACYCFNVFEDRRNPENNLVVDADRYRGVAALFNHTCCNANVEVRKLVANNADPRFPVHGFFARRKIEIKDNRM-PELVFNYGTRETPNPCLCDSCEGVR-RSRSEAHPRLR 363
            GG CYCFNV+ DRR PE+N+VVDADRYRGVAALFNH CC ANV+VRKLVANN D R P+HGFFA +KI +K+    PELVFNYG +E P PCLC +C  +  R  S+A  RLR
Sbjct:  416 GGPCYCFNVYTDRRCPEDNIVVDADRYRGVAALFNHACCGANVKVRKLVANNTDRREPIHGFFALKKIVVKEGSPGPELVFNYGAKEKPKPCLCSACAELELRKLSDAPARLR 528
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BLAST of mRNA_H-paniculata_contig6967.14905.1 vs. uniprot
Match: D7G1M9_ECTSI (SET domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M9_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 2.900e-38
Identity = 75/113 (66.37%), Postives = 87/113 (76.99%), Query Frame = 1 
Query:   31 GGACYCFNVFEDRRNPENNLVVDADRYRGVAALFNHTCCNANVEVRKLVANNADPRFPVHGFFARRKIEIKDNRM-PELVFNYGTRETPNPCLCDSCEGVR-RSRSEAHPRLR 363
            GG CYCFNV+ DRR PE+N+VVDADRYRGVAALFNH CC ANV+VRKLVANN D R P+HGFFA +KI +K+    PELVFNYG +E P PCLC +C  +  R  S+A  RLR
Sbjct:  590 GGPCYCFNVYTDRRCPEDNIVVDADRYRGVAALFNHACCGANVKVRKLVANNTDRREPIHGFFALKKIVVKEGSPGPELVFNYGAKEKPKPCLCSACAELELRKLSDAPARLR 702
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6967.14905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJ27_9PHAE4.230e-3966.37SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G1M9_ECTSI2.900e-3866.37SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6967contigH-paniculata_contig6967:758..3383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score160.6
Seed ortholog evalue4.6e-37
Seed eggNOG ortholog2880.D7G1M9
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K11420,ko:K11433
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko04211,map00310,map04211
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG1082@2759
EC2.1.1.43
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Exons3
Model size1819
Cds size366
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6967.14905.1prot_H-paniculata_contig6967.14905.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6967 758..1931 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930837.2188327-CDS-H-paniculata_contig6967:757..8641622930837.2188327-CDS-H-paniculata_contig6967:757..864Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6967 758..864 +
1691481474.6934066-CDS-H-paniculata_contig6967:757..8641691481474.6934066-CDS-H-paniculata_contig6967:757..864Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6967 758..864 +
1622930837.2752266-CDS-H-paniculata_contig6967:1155..12941622930837.2752266-CDS-H-paniculata_contig6967:1155..1294Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6967 1156..1294 +
1691481474.706034-CDS-H-paniculata_contig6967:1155..12941691481474.706034-CDS-H-paniculata_contig6967:1155..1294Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6967 1156..1294 +
1622930837.2919025-CDS-H-paniculata_contig6967:1811..19311622930837.2919025-CDS-H-paniculata_contig6967:1811..1931Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6967 1812..1931 +
1691481474.7164705-CDS-H-paniculata_contig6967:1811..19311691481474.7164705-CDS-H-paniculata_contig6967:1811..1931Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6967 1812..1931 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930837.306195-UTR-H-paniculata_contig6967:1931..33831622930837.306195-UTR-H-paniculata_contig6967:1931..3383Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6967 1932..3383 +
1691481474.7264416-UTR-H-paniculata_contig6967:1931..33831691481474.7264416-UTR-H-paniculata_contig6967:1931..3383Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6967 1932..3383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6967.14905.1

>prot_H-paniculata_contig6967.14905.1 ID=prot_H-paniculata_contig6967.14905.1|Name=mRNA_H-paniculata_contig6967.14905.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
RDRREGPSGGGGACYCFNVFEDRRNPENNLVVDADRYRGVAALFNHTCCN
ANVEVRKLVANNADPRFPVHGFFARRKIEIKDNRMPELVFNYGTRETPNP
CLCDSCEGVRRSRSEAHPRLR*
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mRNA from alignment at H-paniculata_contig6967:758..3383+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6967.14905.1 ID=mRNA_H-paniculata_contig6967.14905.1|Name=mRNA_H-paniculata_contig6967.14905.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2626bp|location=Sequence derived from alignment at H-paniculata_contig6967:758..3383+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAGACAGAAGGGAGGGTCCTTCTGGGGGAGGGGGTGCATGCTATTGCTT
CAACGTCTTTGAGGACAGGAGGAACCCTGAGAACAATTTGGTCGTGGACG
CTGACAGGCATGGGGAAGAACAGCTTATGATTTTGTTTTTTGCCGTGTAT
TACTAGCGACAGTTTGCACGTGTTTTTGGCTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCCATT
GCTGTTGTTGCCATTGCTGTTGCTATTGCTGTTGCTATTGCTGTTGCCGT
TGCCGTTGCCGTTGCCGTTGTTGCCATTGTTGCCTTGCTGGTGTTTTGAC
CCCCGTAAACTATTGTGGATTCCAATATTTTCGTTTATTCCGAGTCAGGT
ATCGGGGGGTAGCAGCGCTTTTCAATCACACGTGCTGCAACGCTAACGTG
GAAGTGCGGAAACTGGTGGCCAACAACGCTGATCCGCGCTTTCCCGTACA
CGGGTTCTTCGCTCGCCGCAAGATCGAGATCAAAGACGTGAGAATCAGTC
CCTCAGTGACTCACCAACCATGATATAATCTGTAGTGCATCACAATCCGT
TGTATTCCGTAATCTGTCGGCGTCAGTAAGGCTTCAGTCAGTCGGCGTCA
GCTGCAAGCCATCGTACGTTTACAGTTACACTTACTTACACTCCATCGTT
AGCCACAGTCAGTTGTACATCATCATGCGAAAGTAACAGCCGGTCATGTA
ATTCCCTCAAACATACATGATTCGCACTCTACAGTTATACCCTAGGTAGA
GCAATGCTTTTCCAATGCGAACAATCTGTAAATTCTTATTCCGTTGTTTC
CTATGGCTAACCCGTTTGCATCGTTTAGTGGTGCTGATGAGTATCTAATG
GCAATTATATTGGCCATAGCTTTGACATTAAAAGTTACACAACCTCTGGC
TGTATATGAAGTTGAATATATCCCGCGAATGTACAAACTAATGATTCCCT
CCCTTGGAAACGTCCTCCCCCCCCTTTGCCAACGATGACCCTAATTGTTT
TCAGAATAGAATGCCGGAGTTAGTTTTCAATTACGGCACCCGCGAGACAC
CGAACCCTTGCCTGTGTGACTCATGCGAAGGGGTCAGGCGCAGCAGAAGC
GAAGCGCATCCAAGGTTAAGATAGCAAAAGATGGTATAACACCATAGTTT
ACAGTGGAGTTCGTAAAAAGTCGCGTATAAAGAGGAAGTACAAGAGAGCG
TTTCACACGTTCGGCTAAGCTGTACCGTCCCTTTTAGAGGATGACAGTAG
GTGGACGTTCCCTTTTTTAGCTAGACTGATACAGCTAGCTCTTTTTCGCA
CGTGGTGCTTCGAAGTGGCGAAGAGATTTCATGAATTTTATGGTATACTG
AAGTGTAATATAGTTCTGATTATAGGCTGGGCTACTGAACCGGCAGCAGC
GCATGGGGTCTGTCTGAGCGATCATCCCAACGTGACGCCGACAATTGAAT
GTGACGGCGAGAGACAGGCGGCAGCAAGGGCCGTTATCTGGGCTGCAAAC
AAGCAGCAGGCGGGATGTTCGAGGCTTTCATCCTAATGCCGTCGCACATT
GGGCGATATCCGGGTCGTTGCTTTAGCCGTGAGTGATTCTTAGGCAGTTT
GAGGCGGTTCGATGGTATTCACAGGAAGGAATCTCTACCACATTATGGCA
ATACTACAGATGCCCGTGCTTGGGAGGAGAGTCCAACGGAAAATGTTGGA
GCATGGCAAACGTATGAACTATCAAATTTAGCATGGCAGGTGATTTACGG
AGCGCTAGAGTACGACAAAATAAGCAAGAACCCTTTGGGCCCATACATGC
CTGTACTGACTACGTGACACACTATATGTCGTGCTTTATAGACAAGTTAG
GTAAGTAGTTCTTGAGCTACTACAAGTGATTTTTTTTAGGGCGAACGAAA
CGCGCGTTTGGCACGTACGACGAATGCCATTTTGGCGCAGTGTAGGTTAG
AGAGAGAAAACGATGAACGCTTCGTGTCTTTTTGCAAAGCGAGTGAAGAC
GCAACAAACACGTGGTTTTGCTCCTTTTTTTTTGTGCGTTGAAAACGGAA
AGAGTTTCAAGTTTCCCTTGTATTGGTTATGCGAGGAACGCGACGCAAGA
CGACGTTTAATTCTTCCATGTACCTTTTTTTGGGTCACTCGGGTCAGTGG
GTGGCAGAATGCGTCCATACATTTGCCTGCCCTGAAGTATTTCTGTACAC
CTGTACTTGACGGATTGTTTCGTGCGTTCGCGGGTGTTGTTTGTTGACTA
TATATAGCCTATTAGTGTTGCGGCTGGTTACCCACCGCCAAGACCTCTTC
TGTTCCATTATTAGTGCCCATCGTGGCCTTCTCAGACGCAACCCCATTGT
ACCGCGGTACGGTGTGTGTTTGTTGTTGACTAGCCTAGTACATGTGCAGA
GTGTGATTAAGTTCTTGTATGTTGTGTAATAAGTACGTGTGGTGTAATGT
GTTAGAAAACGATTTATCCGAGTGAAGCATGGTGTATTTCTGGGGGTGGG
GTGGAGATGTTTAGATAAGCGATAGTGGTTTAACCACATTTACCCCGTAG
CCTTTCCTACATTTTTTTTCTCCTCT
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Coding sequence (CDS) from alignment at H-paniculata_contig6967:758..3383+

>mRNA_H-paniculata_contig6967.14905.1 ID=mRNA_H-paniculata_contig6967.14905.1|Name=mRNA_H-paniculata_contig6967.14905.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig6967:758..3383+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAGACAGAAGGGAGGGTCCTTCTGGGGGAGGGGGTGCATGCTATTGCTT
CAACGTCTTTGAGGACAGGAGGAACCCTGAGAACAATTTGGTCGTGGACG
CTGACAGCGAGACAGAAGGGAGGGTCCTTCTGGGGGAGGGGGTGCATGCT
ATTGCTTCAACGTCTTTGAGGACAGGAGGAACCCTGAGAACAATTTGGTC
GTGGACGCTGACAGGTATCGGGGGGTAGCAGCGCTTTTCAATCACACGTG
CTGCAACGCTAACGTGGAAGTGCGGAAACTGGTGGCCAACAACGCTGATC
CGCGCTTTCCCGTACACGGGTTCTTCGCTCGCCGCAAGATCGAGATCAAA
GACGTATCGGGGGGTAGCAGCGCTTTTCAATCACACGTGCTGCAACGCTA
ACGTGGAAGTGCGGAAACTGGTGGCCAACAACGCTGATCCGCGCTTTCCC
GTACACGGGTTCTTCGCTCGCCGCAAGATCGAGATCAAAGACAATAGAAT
GCCGGAGTTAGTTTTCAATTACGGCACCCGCGAGACACCGAACCCTTGCC
TGTGTGACTCATGCGAAGGGGTCAGGCGCAGCAGAAGCGAAGCGCATCCA
AGGTTAAGATAGAATAGAATGCCGGAGTTAGTTTTCAATTACGGCACCCG
CGAGACACCGAACCCTTGCCTGTGTGACTCATGCGAAGGGGTCAGGCGCA
GCAGAAGCGAAGCGCATCCAAGGTTAAGATAG
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