mRNA_H-paniculata_contig68813.14804.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig68813.14804.1
Unique NamemRNA_H-paniculata_contig68813.14804.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig68813.14804.1 vs. uniprot
Match: A0A2Z6R9E0_9GLOM (Uncharacterized protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6R9E0_9GLOM)

HSP 1 Score: 70.9 bits (172), Expect = 8.230e-12
Identity = 47/123 (38.21%), Postives = 63/123 (51.22%), Query Frame = 1
Query:    1 PCNLKLLYRASVDGFDASSFHAKCDRSTSTLTLVKVDSGQGCESIVGGYADTSWSQATATYPNNGYESS-KGFIFSLKNGTDKINARDADDMFPRAAKYPIDDRARQFAIICHATEGPRFGNF 366
            P   KLLYR+  DGF+A+SFH KCD   +T+ + K+   QG   +VGGY    WS       NN ++S+   F+F L   TD+ N   A   +   A Y         AI CH T+GP  G+F
Sbjct:  320 PYEFKLLYRSDRDGFNAASFHNKCDSKGATIWIAKI---QGTTQLVGGYNPLDWSG------NNVWKSTTNSFLFYL---TDEKNISSAKLSYVNNANY---------AIYCHDTQGPHMGDF 421          
BLAST of mRNA_H-paniculata_contig68813.14804.1 vs. uniprot
Match: D2VCC1_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VCC1_NAEGR)

HSP 1 Score: 68.6 bits (166), Expect = 4.580e-11
Identity = 41/125 (32.80%), Postives = 65/125 (52.00%), Query Frame = 1
Query:    1 PCNLKLLYRASVDGFDASSFHAKCDRSTSTLTLVKVDSGQGCESIVGGYADTSWSQATATYPNNGYESSKGFIFSLKNGTDKINARDADDMFPRAAK-----YPIDDRARQFAIICHATEGPRFG 360
            P  LKL+++AS DGF A +FH+KCD   ST+ +VK  +G    ++ GGY   SW+  T  +    +     F+FSL +  DK+      + F +  +     + I D + Q++I  +   GP FG
Sbjct:  203 PNGLKLIFKASRDGFSAQAFHSKCDNKGSTVVIVKAKTG----AVFGGYTSISWTSTTGAF----FPDKSAFLFSLVSA-DKV------ERFTKLTQQYGYYFKIGDNSSQYSIYHNPQYGPAFG 312          
BLAST of mRNA_H-paniculata_contig68813.14804.1 vs. uniprot
Match: A0A3M7T9B4_BRAPC (Tldc domain-containing n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7T9B4_BRAPC)

HSP 1 Score: 68.2 bits (165), Expect = 8.220e-11
Identity = 42/122 (34.43%), Postives = 61/122 (50.00%), Query Frame = 1
Query:    7 NLKLLYRASVDGFDASSFHAKCDRSTSTLTLVKVDSGQGCESIVGGYADTSWSQATATYPNNGYESSKGFIFSLKNGTDKINARDADDMFPRAAKYPIDDRARQFAIICHATEGPRFGNFDL 372
            N KLLYR S DGF+A SFH KCD   +TLT+V+ D+ +    I GG+  ++WS  +  + ++ Y     F+FSL   ++        D               ++AI C    GP FGN D+
Sbjct:  787 NWKLLYRGSRDGFEACSFHKKCDTHPNTLTIVRTDTLK----IFGGFTGSTWSSDSNEFKSDPY----AFLFSLATNSNNSQIIKCSD--------------EKYAIYCDKDFGPCFGNGDI 886          
BLAST of mRNA_H-paniculata_contig68813.14804.1 vs. uniprot
Match: A0A7S1B139_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1B139_NOCSC)

HSP 1 Score: 67.0 bits (162), Expect = 1.090e-10
Identity = 46/122 (37.70%), Postives = 66/122 (54.10%), Query Frame = 1
Query:   13 KLLYRASVDGFDASSFHAKCDRSTSTLTLVKVDSGQGCESIVGGYADTSWSQATATYPNNGYESSKGFIFSLKNGTDKINARDADDMFPRAAKYPIDDRARQFAIICHATEGPRFG-NFDLW 375
            +LLYRA+ DGF+ASSFH +CD    TL +V+       + + GGY++ SWS +T++Y +    S++ F+FSL      +N  D   M     + PI    R  AI  H   GP FG   DL+
Sbjct:   31 RLLYRATRDGFEASSFHHRCDGLGPTLVVVR-----SAQHVFGGYSEVSWS-STSSYTS----STESFVFSL------VNPLDLPPM-----RLPIKAGGRDKAIYGHPAYGPTFGCGHDLY 131          
BLAST of mRNA_H-paniculata_contig68813.14804.1 vs. uniprot
Match: A0A3M6TEQ2_POCDA (Uncharacterized protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TEQ2_POCDA)

HSP 1 Score: 66.2 bits (160), Expect = 3.770e-10
Identity = 43/118 (36.44%), Postives = 61/118 (51.69%), Query Frame = 1
Query:   10 LKLLYRASVDGFDASSFHAKCDRSTSTLTLVKVDSGQGCESIVGGYADTSWSQATATYPNNGYESSK-GFIFSLKNGTDKINARDADDMFPRAAKYPIDDRARQFAIICHATEGPRFG 360
            L+LL+RAS DGF A +FH+KCD    T+T+V     Q  + I GG+ + SW          GY S K  F+FS+      +N R       + AK P+    +++AI C +  GP FG
Sbjct:  487 LRLLFRASQDGFMAKTFHSKCDNKGPTVTIV-----QSGKYIFGGFTEESWDS------QGGYISCKEAFLFSM------VNPRGL-----KPAKMPLSQDGQKYAICCRSDYGPTFG 582          
BLAST of mRNA_H-paniculata_contig68813.14804.1 vs. uniprot
Match: A0A397HHM3_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397HHM3_9GLOM)

HSP 1 Score: 65.9 bits (159), Expect = 4.730e-10
Identity = 44/122 (36.07%), Postives = 58/122 (47.54%), Query Frame = 1
Query:    7 NLKLLYRASVDGFDASSFHAKCDRSTSTLTLVKVDSGQGCESIVGGYADTSWSQATATYPNNGYESSKGFIFSLKNGTDKINARDADDMFPRAAKYPIDDRARQFAIICHATEGPRFGNFDL 372
            + K+L R S DGFDA++FHA+CDR   T+ +VK+D   G   I+GGY    W       P     S K FIFSL +G +                  + D A   A+  H + GP FG  DL
Sbjct:  341 DFKILVRGSRDGFDATTFHARCDRKGPTVVVVKID---GTGEILGGYNAAFWRTGAVYIP-----SDKSFIFSLGDGKN----------LQEVQLSRVRDSAS--AMYGHTSYGPHFGTADL 442          
BLAST of mRNA_H-paniculata_contig68813.14804.1 vs. uniprot
Match: UPI000F555AA1 (uncharacterized protein LOC113678592 n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F555AA1)

HSP 1 Score: 65.5 bits (158), Expect = 5.970e-10
Identity = 41/121 (33.88%), Postives = 58/121 (47.93%), Query Frame = 1
Query:   10 LKLLYRASVDGFDASSFHAKCDRSTSTLTLVKVDSGQGCESIVGGYADTSWSQATATYPNNGYESSKGFIFSLKNGTDKINARDADDMFPRAAKYPIDDRARQFAIICHATEGPRFGNFDL 372
            L+LL+RAS DGF A++FH KCD    T+ LV     Q    + GG+ + SW      Y       ++ F+FSL N +                K P+   + Q+AI+ +   GP FGN DL
Sbjct:  235 LRLLFRASRDGFAANTFHDKCDNKGPTIVLV-----QSGNYVFGGFTEKSWMCGEGGYTI----CTQAFLFSLANPSGL-----------EPTKLPLKSNSHQYAILSNGGNGPTFGNGDL 335          
BLAST of mRNA_H-paniculata_contig68813.14804.1 vs. uniprot
Match: D2VUR3_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VUR3_NAEGR)

HSP 1 Score: 64.7 bits (156), Expect = 7.510e-10
Identity = 43/123 (34.96%), Postives = 64/123 (52.03%), Query Frame = 1
Query:   10 LKLLYRASVDGFDASSFHAKCDRSTSTLTLVKVDSGQGCESIVGGYADTSWSQATATYPNNGYESSKGFIFSLKNGTDKINARDADDMFPRAAKYPIDDRARQFAIICHATEGPRFGN-FDLW 375
            LKLLY+AS DGF +  FH KCD   +T+T++K D+G    +I GGY   +W+  T       Y S + F+FSL + + +   +  + + P     P   R+    I  H+  GP FG   DL+
Sbjct:  131 LKLLYKASRDGFQSKQFHTKCDNQGATVTIIKADTG----AIFGGYTSAAWN--TTVMSQFAY-SERAFLFSLVSNSGEERFKKLNQLAP--PNSPSQGRS----IYSHSRFGPTFGGGHDLY 240          
BLAST of mRNA_H-paniculata_contig68813.14804.1 vs. uniprot
Match: A0A7S2EA53_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EA53_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.040e-9
Identity = 46/126 (36.51%), Postives = 63/126 (50.00%), Query Frame = 1
Query:   10 LKLLYRASVDGFDASSFHAKCDRSTSTLTLVKVDSGQGCESIVGGYADTSWSQATATYPNNGYES-SKGFIFSLK--NGTDKINARDADDMFPRAAKYPIDDRARQFAIICHATEGPRFGN-FDLW 375
            +K+LYRAS DG+ AS+FHAKCD    TLT+++       + I GG+ DT WS       + GY+S SK F+FSL   +G      R             + D     A+  +   GP FG  FDL+
Sbjct:    1 MKILYRASHDGWQASNFHAKCDNQGPTLTVIRTTE----DYIFGGFCDTPWSS------DGGYKSASKTFLFSLHCFSGLSPTKMR-------------LKDGHASTAVCHNGFYGPTFGRGFDLY 103          
BLAST of mRNA_H-paniculata_contig68813.14804.1 vs. uniprot
Match: A0A2B4SKJ6_STYPI (Interferon-induced protein 44 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SKJ6_STYPI)

HSP 1 Score: 64.3 bits (155), Expect = 1.110e-9
Identity = 41/119 (34.45%), Postives = 63/119 (52.94%), Query Frame = 1
Query:    7 NLKLLYRASVDGFDASSFHAKCDRSTSTLTLVKVDSGQGCESIVGGYADTSWSQATATYPNNGYES-SKGFIFSLKNGTDKINARDADDMFPRAAKYPIDDRARQFAIICHATEGPRFG 360
            +L+LL+RAS DGF A +FH+KCD    T T+V     Q  + + GG+ + SWS         GY + ++ F+FS+      +N R  +       K P+  + +Q+AI C +  GP FG
Sbjct:  126 SLRLLFRASQDGFRAKTFHSKCDSKGPTPTIV-----QSGDYVFGGFTEESWSS------QGGYATCTEAFLFSI------VNPRGLEP-----TKMPLKQQDQQYAIYCKSDFGPTFG 222          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig68813.14804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2Z6R9E0_9GLOM8.230e-1238.21Uncharacterized protein n=1 Tax=Rhizophagus clarus... [more]
D2VCC1_NAEGR4.580e-1132.80Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
A0A3M7T9B4_BRAPC8.220e-1134.43Tldc domain-containing n=1 Tax=Brachionus plicatil... [more]
A0A7S1B139_NOCSC1.090e-1037.70Hypothetical protein (Fragment) n=1 Tax=Noctiluca ... [more]
A0A3M6TEQ2_POCDA3.770e-1036.44Uncharacterized protein n=1 Tax=Pocillopora damico... [more]
A0A397HHM3_9GLOM4.730e-1036.07Uncharacterized protein n=1 Tax=Diversispora epiga... [more]
UPI000F555AA15.970e-1033.88uncharacterized protein LOC113678592 n=1 Tax=Pocil... [more]
D2VUR3_NAEGR7.510e-1034.96Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
A0A7S2EA53_9STRA1.040e-936.51Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A2B4SKJ6_STYPI1.110e-934.45Interferon-induced protein 44 n=1 Tax=Stylophora p... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig68813contigH-paniculata_contig68813:291..722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue2.4e-09
Seed eggNOG ortholog588596.U9V6W7
Preferred nameBTBD17
Hectar predicted targeting categoryother localisation
GOsGO:0002790,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009605,GO:0009607,GO:0009615,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0032940,GO:0033036,GO:0042886,GO:0043207,GO:0043900,GO:0043901,GO:0043903,GO:0044424,GO:0044444,GO:0044464,GO:0045069,GO:0045071,GO:0045184,GO:0046903,GO:0048519,GO:0048525,GO:0050789,GO:0050792,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0065007,GO:0071702,GO:0071705,GO:0071944,GO:1903900,GO:1903901
EggNOG free text desc.ubiquitin protein ligase binding
EggNOG OGsKOG2075@1,KOG2075@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size375
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930823.9294446-CDS-H-paniculata_contig68813:290..4671622930823.9294446-CDS-H-paniculata_contig68813:290..467Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig68813 291..467 -
1691481468.777654-CDS-H-paniculata_contig68813:290..4671691481468.777654-CDS-H-paniculata_contig68813:290..467Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig68813 291..467 -
1622930823.9505446-CDS-H-paniculata_contig68813:524..7221622930823.9505446-CDS-H-paniculata_contig68813:524..722Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig68813 525..722 -
1691481468.794674-CDS-H-paniculata_contig68813:524..7221691481468.794674-CDS-H-paniculata_contig68813:524..722Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig68813 525..722 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig68813.14804.1prot_H-paniculata_contig68813.14804.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig68813 291..722 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig68813.14804.1

>prot_H-paniculata_contig68813.14804.1 ID=prot_H-paniculata_contig68813.14804.1|Name=mRNA_H-paniculata_contig68813.14804.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
PCNLKLLYRASVDGFDASSFHAKCDRSTSTLTLVKVDSGQGCESIVGGYA
DTSWSQATATYPNNGYESSKGFIFSLKNGTDKINARDADDMFPRAAKYPI
DDRARQFAIICHATEGPRFGNFDLW
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mRNA from alignment at H-paniculata_contig68813:291..722-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig68813.14804.1 ID=mRNA_H-paniculata_contig68813.14804.1|Name=mRNA_H-paniculata_contig68813.14804.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=432bp|location=Sequence derived from alignment at H-paniculata_contig68813:291..722- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTTGCAATCTGAAATTGCTCTACCGTGCGTCGGTGGATGGATTCGATGC CTCATCGTTCCATGCTAAGTGCGATCGTTCGACGTCAACGCTGACTCTAG TCAAGGTTGACAGCGGGCAAGGGTGTGAAAGCATCGTTGGAGGATATGCC GACACCTCTTGGTCACAGGCCACGGCCACTTACCCTAACAATGGATATGT GAATGGAACAGAACAGCTCTATGCCGTTCAGTTTTCGGGGTACTCCTTTT ACAAGGAGTCCTCAAAAGGGTTCATATTCTCGCTCAAGAACGGCACCGAC AAAATAAATGCAAGGGACGCGGATGACATGTTTCCACGTGCTGCGAAGTA CCCCATCGACGATCGAGCTAGGCAATTTGCCATCATTTGTCACGCAACCG AGGGACCCAGGTTCGGCAACTTCGACTTGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig68813:291..722-

>mRNA_H-paniculata_contig68813.14804.1 ID=mRNA_H-paniculata_contig68813.14804.1|Name=mRNA_H-paniculata_contig68813.14804.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig68813:291..722- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTTGCAATCTGAAATTGCTCTACCGTGCGTCGGTGGATGGATTCGATGC
CTCATCGTTCCATGCTAAGTGCGATCGTTCGACGTCAACGCTGACTCTAG
TCAAGGTTGACAGCGGGCAAGGGTGTGAAAGCATCGTTGGAGGATATGCC
GACACCTCTTGGTCACAGGCCACGGCCACTTACCCTAACAATGGATATCC
TTGCAATCTGAAATTGCTCTACCGTGCGTCGGTGGATGGATTCGATGCCT
CATCGTTCCATGCTAAGTGCGATCGTTCGACGTCAACGCTGACTCTAGTC
AAGGTTGACAGCGGGCAAGGGTGTGAAAGCATCGTTGGAGGATATGCCGA
CACCTCTTGGTCACAGGCCACGGCCACTTACCCTAACAATGGATATGAGT
CCTCAAAAGGGTTCATATTCTCGCTCAAGAACGGCACCGACAAAATAAAT
GCAAGGGACGCGGATGACATGTTTCCACGTGCTGCGAAGTACCCCATCGA
CGATCGAGCTAGGCAATTTGCCATCATTTGTCACGCAACCGAGGGACCCA
GGTTCGGCAACTTCGACTTGTGGGAGTCCTCAAAAGGGTTCATATTCTCG
CTCAAGAACGGCACCGACAAAATAAATGCAAGGGACGCGGATGACATGTT
TCCACGTGCTGCGAAGTACCCCATCGACGATCGAGCTAGGCAATTTGCCA
TCATTTGTCACGCAACCGAGGGACCCAGGTTCGGCAACTTCGACTTGTGG
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