mRNA_H-paniculata_contig6881.14803.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6881.14803.1
Unique NamemRNA_H-paniculata_contig6881.14803.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6881.14803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6881contigH-paniculata_contig6881:1798..2269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930823.86277-CDS-H-paniculata_contig6881:1797..18871622930823.86277-CDS-H-paniculata_contig6881:1797..1887Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6881 1798..1887 -
1691481468.753904-CDS-H-paniculata_contig6881:1797..18871691481468.753904-CDS-H-paniculata_contig6881:1797..1887Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6881 1798..1887 -
1622930823.8802884-CDS-H-paniculata_contig6881:2143..22691622930823.8802884-CDS-H-paniculata_contig6881:2143..2269Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6881 2144..2269 -
1691481468.7627811-CDS-H-paniculata_contig6881:2143..22691691481468.7627811-CDS-H-paniculata_contig6881:2143..2269Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6881 2144..2269 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6881.14803.1prot_H-paniculata_contig6881.14803.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6881 1798..2269 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6881.14803.1

>prot_H-paniculata_contig6881.14803.1 ID=prot_H-paniculata_contig6881.14803.1|Name=mRNA_H-paniculata_contig6881.14803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
DWLWHALSPSRVPVATSPHPFRWGQIQLVIRYTARMAIDRQQVQTSNFAS
RMMCLSLMCPHLSSQTPTNQA*
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mRNA from alignment at H-paniculata_contig6881:1798..2269-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6881.14803.1 ID=mRNA_H-paniculata_contig6881.14803.1|Name=mRNA_H-paniculata_contig6881.14803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=472bp|location=Sequence derived from alignment at H-paniculata_contig6881:1798..2269- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTGGCTCTGGCACGCTCTTTCGCCCTCACGTGTACCAGTCGCGACATC
TCCACATCCTTTTCGTTGGGGGCAGATACAGTTGGTAATACGATACACCG
CGCGAATGGCGATTGATCGACAGCAGGTGAGAAAAAGGGTTCAACGACAG
GAAACAGACAAACACCGACGACTGCAACAAATGCACAAAATGTACTTCCC
AACGTTTTTTCGTACCGCGCTGTGACCAAGCCATGAGAAGGGCAGTAGGA
TCGGACTCAAGACATGGCAACGCACACACCTTATAGTGATCAAGAAGGTG
GCGCTCTATCACCATTATCTCAAGGGTTTCCCACCCGCCCCCCCATTGCC
TTCGCCCTACGTCGAGCGCTTCGCTTATCAAGGTGCAAACGTCGAACTTC
GCGAGCCGCATGATGTGCCTTAGCTTGATGTGTCCGCATTTATCCAGCCA
GACGCCGACGAACCAGGCGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig6881:1798..2269-

>mRNA_H-paniculata_contig6881.14803.1 ID=mRNA_H-paniculata_contig6881.14803.1|Name=mRNA_H-paniculata_contig6881.14803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig6881:1798..2269- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTGGCTCTGGCACGCTCTTTCGCCCTCACGTGTACCAGTCGCGACATC
TCCACATCCTTTTCGTTGGGGGCAGATACAGTTGGTAATACGATACACCG
CGCGAATGGCGATTGATCGACAGCAGGATTGGCTCTGGCACGCTCTTTCG
CCCTCACGTGTACCAGTCGCGACATCTCCACATCCTTTTCGTTGGGGGCA
GATACAGTTGGTAATACGATACACCGCGCGAATGGCGATTGATCGACAGC
AGGTGCAAACGTCGAACTTCGCGAGCCGCATGATGTGCCTTAGCTTGATG
TGTCCGCATTTATCCAGCCAGACGCCGACGAACCAGGCGTAGGTGCAAAC
GTCGAACTTCGCGAGCCGCATGATGTGCCTTAGCTTGATGTGTCCGCATT
TATCCAGCCAGACGCCGACGAACCAGGCGTAG
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