prot_H-paniculata_contig688.14800.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig688.14800.1
Unique Nameprot_H-paniculata_contig688.14800.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length479
Homology
BLAST of mRNA_H-paniculata_contig688.14800.1 vs. uniprot
Match: D8LDM1_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDM1_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 2.120e-32
Identity = 72/134 (53.73%), Postives = 100/134 (74.63%), Query Frame = 0
Query:   12 GATKRPLS---GAGSVDKDKKREKIS---SSPSQRGMDIPQRPGEVKVFIGNLNFDLSLDTIASEFGSCGSIVRCKLVNGPDGRSRGMAFVSYADKAMADRAISKYQDTVFHGRKIQVRVATMKDEHKAAYQST 139
            G+TKR LS     GS +KDKK ++     SSP  RG+D P RPGEVK+ I NL++++SLD +ASEF +CG+++RC+++NGPDGRSRG+AFVS+ +K+ ADRAISKY D +F GRK+QV +++  DE +    ST
Sbjct:    9 GSTKRALSTTAAVGSAEKDKKHKRTGNTLSSPLHRGIDGPPRPGEVKLLISNLHYEVSLDLLASEFSTCGAVMRCRIINGPDGRSRGVAFVSFGEKSSADRAISKYHDRLFRGRKLQVTISSKNDERRELAMST 142          
BLAST of mRNA_H-paniculata_contig688.14800.1 vs. uniprot
Match: A0A0L0P3D9_CANAR (Uncharacterized protein n=1 Tax=Candida auris TaxID=498019 RepID=A0A0L0P3D9_CANAR)

HSP 1 Score: 69.7 bits (169), Expect = 2.150e-9
Identity = 47/124 (37.90%), Postives = 63/124 (50.81%), Query Frame = 0
Query:   27 DKKREKISSSPSQRGMDIPQRPGEVKVFIGNLNFDLSLDTIASEFGSCGSIVRCKLVNGPDGRSRGMAFVSYADKAMADRAISKYQDTVFHGRKIQVRVATMKDEHKAAYQSTGTKNTLGPGGP 150
            +K+RE  S S   +  D    P   +VF+GNL + +S  T+  EF S GSIVR  ++    GRSRG   V +   A A  AI KY      GR+I+VR    K E K    S+ T+  +G G P
Sbjct:  103 EKRREPESRSTPAKDDDREPNP---EVFVGNLPYSVSWQTLKDEFRSIGSIVRADILTDRSGRSRGYGTVVFRSTADAQAAIDKYNGFELEGRRIEVRFGREKKEAKTKKNSSFTEGVIGGGEP 223          
BLAST of mRNA_H-paniculata_contig688.14800.1 vs. uniprot
Match: A0A6L8BJZ3_9PROT (RNA-binding protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A6L8BJZ3_9PROT)

HSP 1 Score: 59.7 bits (143), Expect = 1.370e-7
Identity = 37/99 (37.37%), Postives = 58/99 (58.59%), Query Frame = 0
Query:   52 KVFIGNLNFDLSLDTIASEFGSCGSIVRCKLVNGPD-GRSRGMAFVSYADKAMADRAISKYQDTVFHGRKIQVRVATMKDEHKAAYQSTGTKNTLGPGG 149
            K+++GNL F  + +TI S+F +CG++   KL+   D GRS+G  F+  + +A A  AI    DT F+GR ++V  A  K + K   +S+G +   G GG
Sbjct:    4 KLYVGNLPFSATEETILSKFAACGTVESVKLITDRDTGRSKGFGFIEMSSEAEARAAIDSLNDTDFNGRSLRVNEA--KPQKK---RSSGGRGGYGGGG 97          
BLAST of mRNA_H-paniculata_contig688.14800.1 vs. uniprot
Match: A0A8F2LD36_9ASCO (Uncharacterized protein n=1 Tax=[Candida] haemuloni TaxID=45357 RepID=A0A8F2LD36_9ASCO)

HSP 1 Score: 64.3 bits (155), Expect = 3.000e-7
Identity = 46/116 (39.66%), Postives = 57/116 (49.14%), Query Frame = 0
Query:   29 KREKISSSPSQRGMDIPQRPGEVKVFIGNLNFDLSLDTIASEFGSCGSIVRCKLVNGPDGRSRGMAFVSYADKAMADRAISKYQDTVFHGRKIQVRVATMKDEHKAAYQSTGTKNT 144
            KREK  SS S        R    +VF+GNL +  S  T+  EF S G+IVR  ++    G+SRG   V +     A  AI KY    F GR I VR A    E K   QS+G KN+
Sbjct:  442 KREKSESSRSTAPPADEDREPNPEVFVGNLPYTTSWQTLKDEFRSVGTIVRADVLTDRQGKSRGYGTVVFKTTEDAQAAIDKYNGFDFEGRNIDVRFAR---EAKKPAQSSGKKNS 554          
BLAST of mRNA_H-paniculata_contig688.14800.1 vs. uniprot
Match: A0A2H0PLH3_9DELT (RNA-binding protein n=1 Tax=Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_45_16 TaxID=1973974 RepID=A0A2H0PLH3_9DELT)

HSP 1 Score: 57.0 bits (136), Expect = 1.150e-6
Identity = 30/90 (33.33%), Postives = 50/90 (55.56%), Query Frame = 0
Query:   52 KVFIGNLNFDLSLDTIASEFGSCGSIVRCKLVNGPD-GRSRGMAFVSYADKAMADRAISKYQDTVFHGRKIQVRVATMKDEHKAAYQSTG 140
            K+++GNL++  S  +++  FG CGS+   K++   D G+S+G  FV  +    A  AISK+  T   GR I+V  A  +++ +  Y   G
Sbjct:    3 KLYVGNLSYSESEQSLSEMFGDCGSVESVKIIMDQDTGKSKGFGFVEMSTDEEAKAAISKWDGTERSGRSIKVNAAKPREKREGGYSQGG 92          
BLAST of mRNA_H-paniculata_contig688.14800.1 vs. uniprot
Match: A0A2G8HQS1_9PROT (RNA-binding protein n=1 Tax=Halobacteriovorax sp. JY17 TaxID=2014617 RepID=A0A2G8HQS1_9PROT)

HSP 1 Score: 56.6 bits (135), Expect = 1.460e-6
Identity = 30/86 (34.88%), Postives = 46/86 (53.49%), Query Frame = 0
Query:   52 KVFIGNLNFDLSLDTIASEFGSCGSIVRCKLVNGPD-GRSRGMAFVSYADKAMADRAISKYQDTVFHGRKIQVRVATMKDEHKAAY 136
            K+++GNL F  + DT+   F +CG++   KL+   D GRS+G AFV  +    A  AISK+      GR ++V  A  K+     +
Sbjct:    4 KLYVGNLPFSATEDTLLETFSACGTVDSAKLITDRDTGRSKGFAFVEMSSDEEAQEAISKFDGNDLDGRPLRVNEAKPKEPRSGGF 89          
BLAST of mRNA_H-paniculata_contig688.14800.1 vs. uniprot
Match: A0A8H4D6J9_9ASCO (Uncharacterized protein n=2 Tax=[Candida] haemuloni TaxID=45357 RepID=A0A8H4D6J9_9ASCO)

HSP 1 Score: 60.5 bits (145), Expect = 4.880e-6
Identity = 40/116 (34.48%), Postives = 61/116 (52.59%), Query Frame = 0
Query:   29 KREKISSSPSQRGMDIPQRPGEVKVFIGNLNFDLSLDTIASEFGSCGSIVRCKLVNGPDGRSRGMAFVSYADKAMADRAISKYQDTVFHGRKIQVRVATMKDEHKAAYQSTGTKNT 144
            +RE+ S+  +   +D  + P   +VF+GNL +  S  T+  +F S GSIVR  ++    G+SRG   V +     A  AI ++  T   GRKI VR A  ++  K+A   +  KNT
Sbjct:  445 RRERESTRTATTAIDEDREPNP-EVFVGNLPYTTSWQTLKDQFKSVGSIVRADVLVDRQGKSRGYGTVVFRSTEDAQAAIDRFNGTSIEGRKIDVRFA--RESKKSAQSGSTKKNT 557          
BLAST of mRNA_H-paniculata_contig688.14800.1 vs. uniprot
Match: A0A2E9QEQ3_9SPIO (RNA-binding protein n=3 Tax=Spirochaetia TaxID=203692 RepID=A0A2E9QEQ3_9SPIO)

HSP 1 Score: 55.1 bits (131), Expect = 4.950e-6
Identity = 29/77 (37.66%), Postives = 46/77 (59.74%), Query Frame = 0
Query:   51 VKVFIGNLNFDLSLDTIASEFGSCGSIVRCKLVNGPD-GRSRGMAFVSYADKAMADRAISKYQDTVFHGRKIQVRVA 126
            + +++GNLN+  + D++ S F SCG +V  K++   D GRS+G  FV  ++KA   +AIS +      GR I+V  A
Sbjct:    1 MNLYVGNLNYGTTEDSLRSLFSSCGDVVSAKIIIDRDTGRSKGFGFVEMSEKAEGIKAISTFDGQEVDGRNIRVNEA 77          
BLAST of mRNA_H-paniculata_contig688.14800.1 vs. uniprot
Match: A0A1F7JBZ1_9BACT (RNA-binding protein n=1 Tax=Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_01_FULL_44_13 TaxID=1802069 RepID=A0A1F7JBZ1_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 8.360e-6
Identity = 29/83 (34.94%), Postives = 50/83 (60.24%), Query Frame = 0
Query:   52 KVFIGNLNFDLSLDTIASEFGSCGSIVRCKLVNGP-DGRSRGMAFVSYADKAMADRAISKYQDTVFHGRKIQVRVATMKDEHK 133
            K+++GNL + ++ D++   F S G IV   ++     GRS+G  FV++AD+A A++A ++       GRKI V VA  ++E +
Sbjct:    5 KLYVGNLPWSMTNDSLKELFASYGEIVEAIVITDRMSGRSKGFGFVTFADEATAEKAAAEMSGKDLEGRKIVVNVARPREERR 87          
BLAST of mRNA_H-paniculata_contig688.14800.1 vs. uniprot
Match: A0A507DZ49_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DZ49_9FUNG)

HSP 1 Score: 59.3 bits (142), Expect = 8.980e-6
Identity = 34/95 (35.79%), Postives = 51/95 (53.68%), Query Frame = 0
Query:   30 REKISSSPSQRGMDIPQRPGEVKVFIGNLNFDLSLDTIASEFGSCGSIVRCKLVNGPDGRSRGMAFVSYADKAMADRAISKYQDTVFHGRKIQVR 124
            RE+ +   S R +D P R     +F+GNL + ++   +   F   G +VR  +  GPD RSRGM  V +     A  AIS +  T +HGR+++VR
Sbjct:  208 REQEAKFGSSRRVDTPGRA----LFVGNLPYVVAWQDLKDHFRQAGHVVRADVAEGPDRRSRGMGTVVFETAEQAGNAISMFDGTEWHGRRLEVR 298          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig688.14800.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDM1_ECTSI2.120e-3253.73RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A0L0P3D9_CANAR2.150e-937.90Uncharacterized protein n=1 Tax=Candida auris TaxI... [more]
A0A6L8BJZ3_9PROT1.370e-737.37RNA-binding protein n=1 Tax=Proteobacteria bacteri... [more]
A0A8F2LD36_9ASCO3.000e-739.66Uncharacterized protein n=1 Tax=[Candida] haemulon... [more]
A0A2H0PLH3_9DELT1.150e-633.33RNA-binding protein n=1 Tax=Deltaproteobacteria ba... [more]
A0A2G8HQS1_9PROT1.460e-634.88RNA-binding protein n=1 Tax=Halobacteriovorax sp. ... [more]
A0A8H4D6J9_9ASCO4.880e-634.48Uncharacterized protein n=2 Tax=[Candida] haemulon... [more]
A0A2E9QEQ3_9SPIO4.950e-637.66RNA-binding protein n=3 Tax=Spirochaetia TaxID=203... [more]
A0A1F7JBZ1_9BACT8.360e-634.94RNA-binding protein n=1 Tax=Candidatus Roizmanbact... [more]
A0A507DZ49_9FUNG8.980e-635.79Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 52..124
e-value: 3.2E-21
score: 86.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 53..121
e-value: 1.2E-16
score: 60.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 51..128
score: 15.477
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 6..138
e-value: 3.9E-22
score: 80.9
NoneNo IPR availablePANTHERPTHR23236EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4Hcoord: 25..352
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 41..136

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig688contigH-paniculata_contig688:13438..28006 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig688.14800.1mRNA_H-paniculata_contig688.14800.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig688 13438..28749 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig688.14800.1 ID=prot_H-paniculata_contig688.14800.1|Name=mRNA_H-paniculata_contig688.14800.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=479bp
MGTDSTPSTPTGATKRPLSGAGSVDKDKKREKISSSPSQRGMDIPQRPGE
VKVFIGNLNFDLSLDTIASEFGSCGSIVRCKLVNGPDGRSRGMAFVSYAD
KAMADRAISKYQDTVFHGRKIQVRVATMKDEHKAAYQSTGTKNTLGPGGP
GFPGGRNPGLLGRGPGPGFDGFGARGPGGFGPGRGLLGMGPPGNMGGRGL
GPMAGRGPGRGPGRGGLMGPIGGPMGGPNGGGPMGRGGGPMGPMGNGVGP
GGPMGPAGPMGPGGPIGPGGRGIGPGGRGGPMGPGGPMGPGPMGPAGPMP
RGPMGSGRGSLRPPGPNMDMESGGPPGSMGIGGRGPAGPGGRGGRGPRGP
GRGPGGAGRGGRGPGGPDIMGPGPDMMGPGPGPGMGGRGPGLGLGGPRMM
GAGPGGPGGRGMGPGPGAGRGAGPAGRGAGRGVGPGVGGPMGPQVGDMGH
GGPGGPGGAGGRGPMDAMDGPGPDGMGVG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf