mRNA_H-paniculata_contig688.14798.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig688.14798.1
Unique NamemRNA_H-paniculata_contig688.14798.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig688.14798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig688contigH-paniculata_contig688:8113..12153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1838
Cds size1731
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig688.14798.1prot_H-paniculata_contig688.14798.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig688 8121..9851 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930823.3396113-UTR-H-paniculata_contig688:8112..81201622930823.3396113-UTR-H-paniculata_contig688:8112..8120Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig688 8113..8120 -
1691481468.550658-UTR-H-paniculata_contig688:8112..81201691481468.550658-UTR-H-paniculata_contig688:8112..8120Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig688 8113..8120 -
1622930823.3724384-UTR-H-paniculata_contig688:9851..99011622930823.3724384-UTR-H-paniculata_contig688:9851..9901Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig688 9852..9901 -
1691481468.5666938-UTR-H-paniculata_contig688:9851..99011691481468.5666938-UTR-H-paniculata_contig688:9851..9901Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig688 9852..9901 -
1622930823.3885334-UTR-H-paniculata_contig688:12104..121531622930823.3885334-UTR-H-paniculata_contig688:12104..12153Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig688 12105..12153 -
1691481468.584096-UTR-H-paniculata_contig688:12104..121531691481468.584096-UTR-H-paniculata_contig688:12104..12153Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig688 12105..12153 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930823.3562644-CDS-H-paniculata_contig688:8120..98511622930823.3562644-CDS-H-paniculata_contig688:8120..9851Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig688 8121..9851 -
1691481468.5590143-CDS-H-paniculata_contig688:8120..98511691481468.5590143-CDS-H-paniculata_contig688:8120..9851Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig688 8121..9851 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig688.14798.1

>prot_H-paniculata_contig688.14798.1 ID=prot_H-paniculata_contig688.14798.1|Name=mRNA_H-paniculata_contig688.14798.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=577bp
MMRGGGGVAGGGYDNLDDRVGSGGGGQYGSTAADRGSYRDGYGDQRGGYG
AGVVAGSARNGRDLEQASGYDGRESRVAGAAGYPVDDQTNGGAFGSRGGG
GGAGGNYGAGSNVVGGRGNASFRDDYDATREGIAPAAARGGGGVVQRGYD
NDRYDDGAGGAGYRASTVDSRDGGAGGYGSRTDNNNSGAASSSYGYASNN
AGGSGYDNANGGGAAGGATSANNDPFGGGYGTRSRDDVAGYADNGGNSQA
NTAYGNDAGSGYQREVDRGNGRGGYDQQGPSSGDSGYGRAEGVGGAGYDQ
SYANGSGNGNGYGSSNANEMSNNYGNNTSANYVSQSSGGGSAYQAAPITS
DTNDRDSAVVDQQAASGGAYGSSDVYDTYGAQGGTSGTYSQYGGASTTSG
RTPQGTLYGAGQKSSSTAYDTTPSKGSAAYGSTADYPSSSQYQTPRDSNA
ASSSSVYGNYGSSSGGAGGGTSYDATAGGAPYSSTSQATGAGTGAAAGSN
YSSTATGAGGQYASSSGADGGDSSGYWGQQGSGGGYGTSSGTSRTEVGAG
GTAATGGGQYGSTSGTRSGASGGYTW*
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mRNA from alignment at H-paniculata_contig688:8113..12153-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig688.14798.1 ID=mRNA_H-paniculata_contig688.14798.1|Name=mRNA_H-paniculata_contig688.14798.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4041bp|location=Sequence derived from alignment at H-paniculata_contig688:8113..12153- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGGCGATGCTTCTGCCGGGGGTGGTGGGTATGATCGTGGAGGCGCAGG
TAAATGTGAAACTGCTCTGGTTGCTTGTGATGTTGGTATTTCATGGTTCA
TACCGGAACCTTCAGTGGTGATGACGGAGTGTGTTTTGTGCAAGTTCTCA
TAAAGGTCGATGGTATTGAAAGTCAAGTAGAGTTTATGTCACGGTGGATT
AGGTGGAAAGCGTCAGCTGTTGTGGTGAAGTCGTTGACGTGGATTGTGGT
GACTGCTTATGCCAGTGGGTGAACTTCGATGATATCGCGCGGCGTACGTA
CCACCTCTACTCCCGAGTGTTCCCCCCCCCGGCTCCCGTCGCGTGGCCTA
CTGATAATTCCGTCGGGGTGTGTCTTGGCGGTGCGTTGTTTGTGCTCGCG
TATATTTGATCAATTAACCCCTCGTCGGTCATTTTCTCAGACCCGTCGCA
AATGGCAGTTAACGAGCACGAACTGTGAAAGGTTAGTGTCGTAGTGGTGT
ACTGTAGCATTGACTTCATGATGCTCGAGAATTTTGGGCCCGAGTCCGTG
ATATTGAAAAGTTCGAGGCACATGTATTTTTTTATATTTTCCGGTGTATT
TTAGTGGAACCTAGCTGCTATAATGTACAGTGATTTTTCAACCAGTCTGC
AGATCCAAAATAATAACAACGATTCTCCAGGACTTCGATACATGAGTTCT
TTGTAGCGATGTACTGTACCACGTGAATTATTTTGCAATATATAGAGGAT
ACGACGCATTTGAGTTTTCGAGTAGGGTTGTTGTGTTTGGTGTCGACTTT
TACTAGTTGTATGCGCCCGAAAAGTGGGTTGCGTGCTTACTTGCTCACAA
TATGAAGCCGCCTCCATTCTACGCTTCGCATTATCCAAGTTGCGTGTTCA
TCCTCCGCGCTTAAAGCTCCTTCCGTGAGCCGGTGTATTGTCGTTGGTGT
TAACAGCTGGATGATCGTTGTACAGAGTTGTGTTTGCCGGGAAAATAGCT
TGACGCAAGGAACAGCCTTGTGTATTTTGAACATCACGGAGACATGATGT
TTTTCTTGTTTTTTCAAACTCGTTTCTATTTTATTTATATGATTCGAATT
GGGTGTAGTGCATTTCTTTGCTTCGTGTAAACAGGTTTCCCGTTGAGGGC
ACGTGGCCGCACGGACATCAAAATCTGTTTTACCCTTGGTATGCCTCTTG
TGCACTCTGTGTCATGCATTTACAAGCTACCCTAAATCAGGTACATGCTT
CATTATGGCTTTCTACCATGTACCGCCGCATGTCGCCTTTTTTGCCTACG
GATAGTGCGAACGCATTAAACGAACCATGCGGTTCTGGGCAGGTCTTGAG
TGTTCGTTTTGTTGTCTTCCTTTAACGTAATCCGGTTCGATACAGTCGCC
CAAACTAGAGTGTCGAACGCTTGTTCTGTTGGCTCCTGTGTTTGCCACGT
GTCATTTCTTGCTGTTGGGCATCGTTCATGGTTTTTTCATGATGTGTTTA
TTTTATTTCCTGGTAAACGAATCATAATATCCCATTGTCGTGGCTAGCCC
AGTCCTATGCGTGTCTGGTTTGTTTGGTTTATTGCCTTCTTTTGACGTGA
TCCGGTGCGACAGAGTCGCCTAAACTAGAACGCGTTGAGCACTCCTTCTA
TGTGTTAGTTGCCACGGTTTCTTTGTCGCGTCTTTTTCTTGCTGTGGGTC
ATCATCTGCCCGGTTTTTTTACACATATACATGGATAATCACATTATACC
GTTGTCGTGTATAGCCCAGTCCCATATGTGCCTTGAGTGGTTTGTTGCCC
TCCTGTGACGTGATCCGGTTCGATACAGTCACCTTGACTAGAGAGGGAGT
ACACTCATTGTGTGTCGGTTGCTGCGATTTACTTGCCGCGTATACTCCCT
TGCCATCAGTTCTCGTGCGTTTTGTGTTGTGGTGAACAATCACAATATCT
CGTTGTCGTTTTTAGCCGGGTTCTATGCGTATGTTGGTGTGTGGCTTGTT
GCCCTCTTTAAAGGTTAATCCGGTTTGATACAGTGGCACACACTGAAGAG
CGTTGTACAACTTTTCTGTATTTCTGTTTTCTTTTATGTATTGCCACGTC
TACGCCCTTGCTATTAGTTCTAATGTGTTGTTTTATCTATATTTGTGCAT
CCTTTTTTCGTTTCCCAGTGGACTATCACATTATCCCGTTGTCGTGGGTA
TCGTACGTTGATTCTTGCTTATTTTTTTCTTTGTTTTGCCCATTTATCGA
AGGCGACCGGCGTGGGCCAGCCGGCCAGTCTGATTACAACGACTCTGCCG
GCATGATGCGCGGCGGTGGCGGTGTTGCTGGGGGTGGTTATGACAACTTG
GATGACCGCGTTGGTAGCGGCGGCGGGGGTCAATATGGCTCGACCGCCGC
CGACCGGGGCAGCTACCGTGATGGTTACGGTGACCAGCGCGGAGGTTATG
GCGCCGGAGTTGTGGCTGGGTCGGCGCGTAATGGGCGTGACCTCGAGCAG
GCTAGTGGTTATGACGGTAGAGAGAGCCGTGTAGCGGGAGCCGCAGGTTA
CCCTGTGGACGACCAGACTAACGGTGGCGCGTTTGGTAGCCGTGGTGGTG
GTGGTGGTGCCGGTGGAAATTATGGGGCCGGTAGCAATGTTGTAGGTGGC
AGGGGGAATGCTTCCTTCCGTGACGATTATGATGCTACAAGAGAGGGTAT
TGCGCCTGCTGCCGCTCGCGGTGGGGGTGGCGTGGTGCAGAGAGGATATG
ACAACGACCGTTACGATGATGGGGCAGGCGGAGCGGGTTACCGCGCTAGC
ACCGTGGATTCACGGGACGGGGGGGCGGGTGGATACGGTAGCCGTACTGA
TAATAACAACTCTGGCGCGGCCAGTAGTTCTTACGGGTATGCAAGCAATA
ACGCCGGCGGGAGCGGGTATGACAATGCCAATGGCGGAGGCGCGGCGGGC
GGTGCGACTAGCGCCAACAACGACCCTTTCGGGGGTGGCTACGGTACGAG
GTCCAGAGATGACGTAGCTGGCTACGCTGACAATGGAGGCAACTCTCAGG
CAAACACCGCCTACGGAAATGACGCTGGCAGCGGTTATCAACGAGAGGTC
GATCGCGGCAATGGCAGGGGCGGTTACGATCAGCAGGGGCCGTCGTCGGG
AGATTCTGGCTACGGCCGGGCAGAAGGCGTTGGGGGCGCGGGTTACGACC
AATCATATGCGAACGGTTCGGGAAACGGTAATGGCTACGGCAGTTCCAAC
GCCAACGAAATGTCTAACAACTACGGCAACAACACCAGTGCTAATTACGT
CTCGCAATCGTCGGGCGGTGGTAGCGCGTATCAAGCTGCTCCGATCACGA
GTGACACGAATGACAGGGACAGCGCAGTGGTAGACCAACAAGCTGCTAGC
GGTGGGGCTTACGGCTCCTCGGACGTTTATGATACATATGGTGCACAGGG
TGGTACCAGCGGGACATACTCGCAATATGGGGGGGCAAGTACCACTTCTG
GAAGGACTCCCCAGGGAACCCTGTACGGGGCGGGACAGAAGTCTTCTTCG
ACTGCCTACGACACGACTCCCAGTAAAGGCAGCGCTGCCTACGGCTCCAC
GGCCGACTATCCCTCTTCCAGCCAGTACCAAACCCCTCGTGACAGTAACG
CTGCCTCGTCATCTTCAGTCTATGGTAACTACGGCAGCTCTTCGGGTGGC
GCAGGCGGCGGAACGTCGTATGACGCAACTGCAGGAGGCGCCCCCTACTC
GTCTACGAGCCAAGCTACCGGCGCCGGCACCGGTGCTGCTGCGGGCAGCA
ACTACAGTAGTACCGCGACAGGCGCCGGCGGTCAGTACGCGTCGAGTTCT
GGTGCGGATGGAGGCGATTCGAGCGGATATTGGGGGCAGCAAGGCAGCGG
TGGGGGCTATGGTACCTCGAGTGGTACGAGTAGGACTGAGGTAGGTGCGG
GTGGTACCGCAGCTACTGGAGGAGGGCAGTACGGGTCCACGTCGGGGACG
CGAAGCGGCGCCTCCGGAGGATACACATGGTGATGTATTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig688:8113..12153-

>mRNA_H-paniculata_contig688.14798.1 ID=mRNA_H-paniculata_contig688.14798.1|Name=mRNA_H-paniculata_contig688.14798.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3462bp|location=Sequence derived from alignment at H-paniculata_contig688:8113..12153- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGCGCGGCGGTGGCGGTGTTGCTGGGGGTGGTTATGACAACTTGGA
TGACCGCGTTGGTAGCGGCGGCGGGGGTCAATATGGCTCGACCGCCGCCG
ACCGGGGCAGCTACCGTGATGGTTACGGTGACCAGCGCGGAGGTTATGGC
GCCGGAGTTGTGGCTGGGTCGGCGCGTAATGGGCGTGACCTCGAGCAGGC
TAGTGGTTATGACGGTAGAGAGAGCCGTGTAGCGGGAGCCGCAGGTTACC
CTGTGGACGACCAGACTAACGGTGGCGCGTTTGGTAGCCGTGGTGGTGGT
GGTGGTGCCGGTGGAAATTATGGGGCCGGTAGCAATGTTGTAGGTGGCAG
GGGGAATGCTTCCTTCCGTGACGATTATGATGCTACAAGAGAGGGTATTG
CGCCTGCTGCCGCTCGCGGTGGGGGTGGCGTGGTGCAGAGAGGATATGAC
AACGACCGTTACGATGATGGGGCAGGCGGAGCGGGTTACCGCGCTAGCAC
CGTGGATTCACGGGACGGGGGGGCGGGTGGATACGGTAGCCGTACTGATA
ATAACAACTCTGGCGCGGCCAGTAGTTCTTACGGGTATGCAAGCAATAAC
GCCGGCGGGAGCGGGTATGACAATGCCAATGGCGGAGGCGCGGCGGGCGG
TGCGACTAGCGCCAACAACGACCCTTTCGGGGGTGGCTACGGTACGAGGT
CCAGAGATGACGTAGCTGGCTACGCTGACAATGGAGGCAACTCTCAGGCA
AACACCGCCTACGGAAATGACGCTGGCAGCGGTTATCAACGAGAGGTCGA
TCGCGGCAATGGCAGGGGCGGTTACGATCAGCAGGGGCCGTCGTCGGGAG
ATTCTGGCTACGGCCGGGCAGAAGGCGTTGGGGGCGCGGGTTACGACCAA
TCATATGCGAACGGTTCGGGAAACGGTAATGGCTACGGCAGTTCCAACGC
CAACGAAATGTCTAACAACTACGGCAACAACACCAGTGCTAATTACGTCT
CGCAATCGTCGGGCGGTGGTAGCGCGTATCAAGCTGCTCCGATCACGAGT
GACACGAATGACAGGGACAGCGCAGTGGTAGACCAACAAGCTGCTAGCGG
TGGGGCTTACGGCTCCTCGGACGTTTATGATACATATGGTGCACAGGGTG
GTACCAGCGGGACATACTCGCAATATGGGGGGGCAAGTACCACTTCTGGA
AGGACTCCCCAGGGAACCCTGTACGGGGCGGGACAGAAGTCTTCTTCGAC
TGCCTACGACACGACTCCCAGTAAAGGCAGCGCTGCCTACGGCTCCACGG
CCGACTATCCCTCTTCCAGCCAGTACCAAACCCCTCGTGACAGTAACGCT
GCCTCGTCATCTTCAGTCTATGGTAACTACGGCAGCTCTTCGGGTGGCGC
AGGCGGCGGAACGTCGTATGACGCAACTGCAGGAGGCGCCCCCTACTCGT
CTACGAGCCAAGCTACCGGCGCCGGCACCGGTGCTGCTGCGGGCAGCAAC
TACAGTAGTACCGCGACAGGCGCCGGCGGTCAGTACGCGTCGAGTTCTGG
TGCGGATGGAGGCGATTCGAGCGGATATTGGGGGCAGCAAGGCAGCGGTG
GGGGCTATGGTACCTCGAGTGGTACGAGTAGGACTGAGGTAGGTGCGGGT
GGTACCGCAGCTACTGGAGGAGGGCAGTACGGGTCCACGTCGGGGACGCG
AAGCGGCGCCTCCGGAGGATACACATGGTGAATGATGCGCGGCGGTGGCG
GTGTTGCTGGGGGTGGTTATGACAACTTGGATGACCGCGTTGGTAGCGGC
GGCGGGGGTCAATATGGCTCGACCGCCGCCGACCGGGGCAGCTACCGTGA
TGGTTACGGTGACCAGCGCGGAGGTTATGGCGCCGGAGTTGTGGCTGGGT
CGGCGCGTAATGGGCGTGACCTCGAGCAGGCTAGTGGTTATGACGGTAGA
GAGAGCCGTGTAGCGGGAGCCGCAGGTTACCCTGTGGACGACCAGACTAA
CGGTGGCGCGTTTGGTAGCCGTGGTGGTGGTGGTGGTGCCGGTGGAAATT
ATGGGGCCGGTAGCAATGTTGTAGGTGGCAGGGGGAATGCTTCCTTCCGT
GACGATTATGATGCTACAAGAGAGGGTATTGCGCCTGCTGCCGCTCGCGG
TGGGGGTGGCGTGGTGCAGAGAGGATATGACAACGACCGTTACGATGATG
GGGCAGGCGGAGCGGGTTACCGCGCTAGCACCGTGGATTCACGGGACGGG
GGGGCGGGTGGATACGGTAGCCGTACTGATAATAACAACTCTGGCGCGGC
CAGTAGTTCTTACGGGTATGCAAGCAATAACGCCGGCGGGAGCGGGTATG
ACAATGCCAATGGCGGAGGCGCGGCGGGCGGTGCGACTAGCGCCAACAAC
GACCCTTTCGGGGGTGGCTACGGTACGAGGTCCAGAGATGACGTAGCTGG
CTACGCTGACAATGGAGGCAACTCTCAGGCAAACACCGCCTACGGAAATG
ACGCTGGCAGCGGTTATCAACGAGAGGTCGATCGCGGCAATGGCAGGGGC
GGTTACGATCAGCAGGGGCCGTCGTCGGGAGATTCTGGCTACGGCCGGGC
AGAAGGCGTTGGGGGCGCGGGTTACGACCAATCATATGCGAACGGTTCGG
GAAACGGTAATGGCTACGGCAGTTCCAACGCCAACGAAATGTCTAACAAC
TACGGCAACAACACCAGTGCTAATTACGTCTCGCAATCGTCGGGCGGTGG
TAGCGCGTATCAAGCTGCTCCGATCACGAGTGACACGAATGACAGGGACA
GCGCAGTGGTAGACCAACAAGCTGCTAGCGGTGGGGCTTACGGCTCCTCG
GACGTTTATGATACATATGGTGCACAGGGTGGTACCAGCGGGACATACTC
GCAATATGGGGGGGCAAGTACCACTTCTGGAAGGACTCCCCAGGGAACCC
TGTACGGGGCGGGACAGAAGTCTTCTTCGACTGCCTACGACACGACTCCC
AGTAAAGGCAGCGCTGCCTACGGCTCCACGGCCGACTATCCCTCTTCCAG
CCAGTACCAAACCCCTCGTGACAGTAACGCTGCCTCGTCATCTTCAGTCT
ATGGTAACTACGGCAGCTCTTCGGGTGGCGCAGGCGGCGGAACGTCGTAT
GACGCAACTGCAGGAGGCGCCCCCTACTCGTCTACGAGCCAAGCTACCGG
CGCCGGCACCGGTGCTGCTGCGGGCAGCAACTACAGTAGTACCGCGACAG
GCGCCGGCGGTCAGTACGCGTCGAGTTCTGGTGCGGATGGAGGCGATTCG
AGCGGATATTGGGGGCAGCAAGGCAGCGGTGGGGGCTATGGTACCTCGAG
TGGTACGAGTAGGACTGAGGTAGGTGCGGGTGGTACCGCAGCTACTGGAG
GAGGGCAGTACGGGTCCACGTCGGGGACGCGAAGCGGCGCCTCCGGAGGA
TACACATGGTGA
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