mRNA_H-paniculata_contig68773.14795.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig68773.14795.1
Unique NamemRNA_H-paniculata_contig68773.14795.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig68773.14795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig68773contigH-paniculata_contig68773:254..607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size354
Cds size354
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930823.062536-CDS-H-paniculata_contig68773:253..6071622930823.062536-CDS-H-paniculata_contig68773:253..607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig68773 254..607 +
1691481468.4885361-CDS-H-paniculata_contig68773:253..6071691481468.4885361-CDS-H-paniculata_contig68773:253..607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig68773 254..607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig68773.14795.1prot_H-paniculata_contig68773.14795.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig68773 254..607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig68773.14795.1

>prot_H-paniculata_contig68773.14795.1 ID=prot_H-paniculata_contig68773.14795.1|Name=mRNA_H-paniculata_contig68773.14795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
MAAVDKALTEAKHAYDAKRADIEARRRREAAAAQADETALATLTKNLSRA
EAAKTAALAASLRFVGQPSNDGHRTISPTPPPLAQTPTVSRPVSALLSVP
EAETFLPNPRDTPFLDMR
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mRNA from alignment at H-paniculata_contig68773:254..607+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig68773.14795.1 ID=mRNA_H-paniculata_contig68773.14795.1|Name=mRNA_H-paniculata_contig68773.14795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=354bp|location=Sequence derived from alignment at H-paniculata_contig68773:254..607+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGCCGTCGACAAGGCGTTGACGGAAGCCAAACATGCCTACGACGC
CAAACGTGCAGACATCGAGGCACGCCGACGGCGTGAAGCTGCGGCGGCGC
AAGCAGATGAGACTGCACTCGCCACGTTGACCAAGAACTTGTCCCGTGCC
GAGGCGGCCAAAACAGCGGCACTGGCTGCCAGCTTGCGCTTTGTTGGCCA
GCCGTCCAATGATGGACACAGGACCATCTCGCCGACGCCGCCCCCGCTTG
CCCAGACACCCACCGTTTCACGACCTGTGTCAGCTCTCCTCTCCGTCCCT
GAGGCAGAAACTTTCCTGCCGAATCCTCGCGACACGCCCTTCCTTGACAT
GCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig68773:254..607+

>mRNA_H-paniculata_contig68773.14795.1 ID=mRNA_H-paniculata_contig68773.14795.1|Name=mRNA_H-paniculata_contig68773.14795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig68773:254..607+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGCCGTCGACAAGGCGTTGACGGAAGCCAAACATGCCTACGACGC
CAAACGTGCAGACATCGAGGCACGCCGACGGCGTGAAGCTGCGGCGGCGC
AAGCAGATGAGACTGCACTCGCCACGTTGACCAAGAACTTGTCCCGTGCC
GAGGCGGCCAAAACAGCGGCACTGGCTGCCAGCTTGCGCTTTGTTGGCCA
GCCGTCCAATGATGGACACAGGACCATCTCGCCGACGCCGCCCCCGCTTG
CCCAGACACCCACCGTTTCACGACCTGTGTCAGCTCTCCTCTCCGTCCCT
GAGGCAGAAACTTTCCTGCCGAATCCTCGCGACACGCCCTTCCTTGACAT
GCGCATGGCGGCCGTCGACAAGGCGTTGACGGAAGCCAAACATGCCTACG
ACGCCAAACGTGCAGACATCGAGGCACGCCGACGGCGTGAAGCTGCGGCG
GCGCAAGCAGATGAGACTGCACTCGCCACGTTGACCAAGAACTTGTCCCG
TGCCGAGGCGGCCAAAACAGCGGCACTGGCTGCCAGCTTGCGCTTTGTTG
GCCAGCCGTCCAATGATGGACACAGGACCATCTCGCCGACGCCGCCCCCG
CTTGCCCAGACACCCACCGTTTCACGACCTGTGTCAGCTCTCCTCTCCGT
CCCTGAGGCAGAAACTTTCCTGCCGAATCCTCGCGACACGCCCTTCCTTG
ACATGCGC
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