mRNA_H-paniculata_contig68740.14791.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig68740.14791.1 vs. uniprot
Match: A0A1I9LVG2_9PHAE (30S ribosomal protein S7, chloroplastic n=37 Tax=Phaeophyceae TaxID=2870 RepID=A0A1I9LVG2_9PHAE) HSP 1 Score: 280 bits (717), Expect = 4.320e-95 Identity = 148/157 (94.27%), Postives = 152/157 (96.82%), Query Frame = 1
Query: 1 MSRRTNKK-RKFPNADAVYDSFLVNLMISKILKSGKKTVAQKIIYEAFDIIKQRTNSQPLKIFEKAVKNVSPAVKIKAKRVGGSTYQVPIEVKKFRGINLGLCWIIQFARARSGKTIAIKLANEIIDASKGSGNSIRKRDETHRMARSNKAFAHFRS 468
MSRRTNKK RKFP ADAVYDSFLVNLMISKI KSGKKTVAQKIIYEAFDIIKQRTNSQPLKIFEKA+KNVSP VKIK+KRVGGSTYQVPIEVKKFRGINLGLCWIIQFA+ARSGKTIAIKLANEIIDASKG GNSIR+RDETHRMARSNKAFAHFRS
Sbjct: 1 MSRRTNKKKRKFPIADAVYDSFLVNLMISKIFKSGKKTVAQKIIYEAFDIIKQRTNSQPLKIFEKAIKNVSPVVKIKSKRVGGSTYQVPIEVKKFRGINLGLCWIIQFAKARSGKTIAIKLANEIIDASKGLGNSIRRRDETHRMARSNKAFAHFRS 157
BLAST of mRNA_H-paniculata_contig68740.14791.1 vs. uniprot
Match: A0A8F0FAS8_9PHAE (Ribosomal protein S7 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAS8_9PHAE) HSP 1 Score: 278 bits (712), Expect = 2.410e-94 Identity = 143/156 (91.67%), Postives = 152/156 (97.44%), Query Frame = 1
Query: 1 MSRRTNKKRKFPNADAVYDSFLVNLMISKILKSGKKTVAQKIIYEAFDIIKQRTNSQPLKIFEKAVKNVSPAVKIKAKRVGGSTYQVPIEVKKFRGINLGLCWIIQFARARSGKTIAIKLANEIIDASKGSGNSIRKRDETHRMARSNKAFAHFRS 468
MSRRTNKKRKFP AD VY+SFLVNLMISKILKSGKKT+AQKIIY+AFDII+Q+TN+QPLKIFEKA+KNVSPAVKIKAKRVGGSTYQVPIEVKKFR INLGLCWIIQFAR RSGKTIAIKLANEIIDASKGSGNSIRK+DETHRMAR+NKAFAHFRS
Sbjct: 1 MSRRTNKKRKFPLADPVYNSFLVNLMISKILKSGKKTIAQKIIYDAFDIIEQKTNNQPLKIFEKAIKNVSPAVKIKAKRVGGSTYQVPIEVKKFRAINLGLCWIIQFARTRSGKTIAIKLANEIIDASKGSGNSIRKKDETHRMARANKAFAHFRS 156
BLAST of mRNA_H-paniculata_contig68740.14791.1 vs. uniprot
Match: A0A8F0F786_9PHAE (Ribosomal protein S7 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F786_9PHAE) HSP 1 Score: 275 bits (703), Expect = 5.690e-93 Identity = 140/156 (89.74%), Postives = 153/156 (98.08%), Query Frame = 1
Query: 1 MSRRTNKKRKFPNADAVYDSFLVNLMISKILKSGKKTVAQKIIYEAFDIIKQRTNSQPLKIFEKAVKNVSPAVKIKAKRVGGSTYQVPIEVKKFRGINLGLCWIIQFARARSGKTIAIKLANEIIDASKGSGNSIRKRDETHRMARSNKAFAHFRS 468
MSRRTNKKRKFP +D VY+SFLVNLM+SK+LKSGKKT+AQKIIYEAFDIIKQ+T+S+PLKIFEKAVKNVSPAVKIKAKRVGGSTYQVPIEVKKFRGINLGLCWII+FARARSGKTIAIKLANEII+ASKG GN+IRK++ETHRMARSNKAFAHFRS
Sbjct: 1 MSRRTNKKRKFPKSDPVYNSFLVNLMMSKVLKSGKKTIAQKIIYEAFDIIKQKTDSEPLKIFEKAVKNVSPAVKIKAKRVGGSTYQVPIEVKKFRGINLGLCWIIKFARARSGKTIAIKLANEIIEASKGVGNAIRKKEETHRMARSNKAFAHFRS 156
BLAST of mRNA_H-paniculata_contig68740.14791.1 vs. uniprot
Match: A0A6B9TP16_SARFS (30S ribosomal protein S7, chloroplastic n=17 Tax=Fucales TaxID=3009 RepID=A0A6B9TP16_SARFS) HSP 1 Score: 264 bits (674), Expect = 1.500e-88 Identity = 135/156 (86.54%), Postives = 148/156 (94.87%), Query Frame = 1
Query: 1 MSRRTNKKRKFPNADAVYDSFLVNLMISKILKSGKKTVAQKIIYEAFDIIKQRTNSQPLKIFEKAVKNVSPAVKIKAKRVGGSTYQVPIEVKKFRGINLGLCWIIQFARARSGKTIAIKLANEIIDASKGSGNSIRKRDETHRMARSNKAFAHFRS 468
MSRRTNKKRKFPN D VY+SFLV+LMISKILK+GKKT A+KI+YEAFDIIKQ+T++QPLKIFE A+KNVSP VKIKAKR+GGSTYQVPIEVKKFRGINLGL WI+QFA+ARSGKTIAIKLANEIIDASKG GN+IRKR ETHRMARSNKAFAHFRS
Sbjct: 1 MSRRTNKKRKFPNEDPVYNSFLVSLMISKILKNGKKTTAEKILYEAFDIIKQKTDTQPLKIFEIAIKNVSPTVKIKAKRIGGSTYQVPIEVKKFRGINLGLSWILQFAKARSGKTIAIKLANEIIDASKGYGNAIRKRHETHRMARSNKAFAHFRS 156
BLAST of mRNA_H-paniculata_contig68740.14791.1 vs. uniprot
Match: A0A2I4Q2J7_9PHAE (30S ribosomal protein S7, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2J7_9PHAE) HSP 1 Score: 244 bits (624), Expect = 6.240e-81 Identity = 124/155 (80.00%), Postives = 142/155 (91.61%), Query Frame = 1
Query: 1 MSRRTNKKRKFPNADAVYDSFLVNLMISKILKSGKKTVAQKIIYEAFDIIKQRTNSQPLKIFEKAVKNVSPAVKIKAKRVGGSTYQVPIEVKKFRGINLGLCWIIQFARARSGKTIAIKLANEIIDASKGSGNSIRKRDETHRMARSNKAFAHFR 465
MSRR NKKRKFP AD +YDS+LVNLMI KILKSGKK VAQ I+YE+F IIK++T + PLKIFEKA+KNVSP+VKI+AKRVGGSTYQVP EVKKFRGINLGL WI+++A+ RSGKTIAIKLANEI++ASKG GNSIRK++ETHRMARSNKAFAHFR
Sbjct: 1 MSRRINKKRKFPIADPLYDSYLVNLMILKILKSGKKRVAQNILYESFTIIKRKTKTHPLKIFEKAIKNVSPSVKIQAKRVGGSTYQVPSEVKKFRGINLGLSWILKYAKTRSGKTIAIKLANEIVEASKGFGNSIRKKEETHRMARSNKAFAHFR 155
BLAST of mRNA_H-paniculata_contig68740.14791.1 vs. uniprot
Match: A0A6P0NIV5_9CYAN (30S ribosomal protein S7 n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0NIV5_9CYAN) HSP 1 Score: 237 bits (605), Expect = 4.900e-78 Identity = 119/155 (76.77%), Postives = 139/155 (89.68%), Query Frame = 1
Query: 1 MSRRTNKKRKFPNADAVYDSFLVNLMISKILKSGKKTVAQKIIYEAFDIIKQRTNSQPLKIFEKAVKNVSPAVKIKAKRVGGSTYQVPIEVKKFRGINLGLCWIIQFARARSGKTIAIKLANEIIDASKGSGNSIRKRDETHRMARSNKAFAHFR 465
MSRR N+KRKFP AD +YDS+LVNL++ KILK+GKK +AQ IIYE F IIK +T + PLK FEKAVKNVSP+VKI++KRVGGSTYQVP EVKKFRGINLGL WI+++AR RSGKT+AIKLANEI++ASKG GNSIRK++ETHRMARSNKAFAHFR
Sbjct: 1 MSRRINRKRKFPIADPLYDSYLVNLIVLKILKNGKKRIAQSIIYETFSIIKSKTKNNPLKTFEKAVKNVSPSVKIQSKRVGGSTYQVPSEVKKFRGINLGLSWILKYARTRSGKTMAIKLANEILEASKGFGNSIRKKEETHRMARSNKAFAHFR 155
BLAST of mRNA_H-paniculata_contig68740.14791.1 vs. uniprot
Match: A0A8E5XRR3_9PHAE (30S ribosomal protein S7, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRR3_9PHAE) HSP 1 Score: 236 bits (601), Expect = 1.930e-77 Identity = 115/155 (74.19%), Postives = 142/155 (91.61%), Query Frame = 1
Query: 1 MSRRTNKKRKFPNADAVYDSFLVNLMISKILKSGKKTVAQKIIYEAFDIIKQRTNSQPLKIFEKAVKNVSPAVKIKAKRVGGSTYQVPIEVKKFRGINLGLCWIIQFARARSGKTIAIKLANEIIDASKGSGNSIRKRDETHRMARSNKAFAHFR 465
MSRR N +R+FP AD +Y+S LVNLMI KILK GKKT AQKIIYE+F+I+KQ+T+ +PLKIFEKAVKNV+P VKIK+KRVGGST+QVP+E+KKFR INLGLCWII+FAR RSGKTIAIKLA+EI+DASKGSG++I+K+++THRMA +N+AFAH+R
Sbjct: 1 MSRRINTRRRFPTADPIYNSLLVNLMILKILKRGKKTTAQKIIYESFNILKQKTDDEPLKIFEKAVKNVTPTVKIKSKRVGGSTFQVPVELKKFRAINLGLCWIIKFARDRSGKTIAIKLAHEILDASKGSGSAIKKKEDTHRMAEANRAFAHYR 155
BLAST of mRNA_H-paniculata_contig68740.14791.1 vs. uniprot
Match: A0A7S6UA20_9STRA (30S ribosomal protein S7, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA20_9STRA) HSP 1 Score: 234 bits (598), Expect = 5.710e-77 Identity = 119/156 (76.28%), Postives = 140/156 (89.74%), Query Frame = 1
Query: 1 MSRRTNKKRKFPNADAVYDSFLVNLMISKILKSGKKTVAQKIIYEAFDIIKQRTNSQPLKIFEKAVKNVSPAVKIKAKRVGGSTYQVPIEVKKFRGINLGLCWIIQFARARSGKTIAIKLANEIIDASKGSGNSIRKRDETHRMARSNKAFAHFRS 468
MSRR+NKKR+FP D VY+SFLV+L SKILK+GKKT+A +II E F II+QRT+ +PLKIFE+AVKNV P++++KAKRVGGSTYQVP EV KF+GINL LCWII+FAR RSG TIAIKLANEII+ASKGSGNSIRK++ETHRMA+SNKAFAHFRS
Sbjct: 1 MSRRSNKKREFPKPDPVYNSFLVSLFTSKILKNGKKTLATRIIEETFSIIQQRTSEEPLKIFERAVKNVCPSLQVKAKRVGGSTYQVPKEVNKFKGINLALCWIIRFARNRSGPTIAIKLANEIIEASKGSGNSIRKKEETHRMAKSNKAFAHFRS 156
BLAST of mRNA_H-paniculata_contig68740.14791.1 vs. uniprot
Match: A0A8E5BF30_9PHAE (Ribosomal protein S7 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5BF30_9PHAE) HSP 1 Score: 209 bits (532), Expect = 6.410e-67 Identity = 107/153 (69.93%), Postives = 132/153 (86.27%), Query Frame = 1
Query: 1 MSRRTNKKRKFPNADAVYDSFLVNLMISKILKSGKKTVAQKIIYEAFDIIKQRTNSQPLKIFEKAVKNVSPAVKIKAKRVGGSTYQVPIEVKKFRGINLGLCWIIQFARARSGKTIAIKLANEIIDASKGSGNSIRKRDETHRMARSNKAFAH 459
MSRRT KR FP AD+VY+S LV+LMISKILK+GKK A+KIIYEAF+II+++T PL+IFEKA+K VSP+V+IK+KR ST QVP E++ FRGINL LCWIIQFA+ R G+T+AIKLANEIIDAS+GSGNSIRK++ETHRMA++NK FA+
Sbjct: 1 MSRRTKIKRNFPLADSVYNSVLVSLMISKILKNGKKIRAEKIIYEAFEIIEKKTKVSPLRIFEKAIKRVSPSVQIKSKRNSNSTLQVPKEIRFFRGINLSLCWIIQFAKVRPGRTMAIKLANEIIDASRGSGNSIRKKEETHRMAKANKVFAY 153
BLAST of mRNA_H-paniculata_contig68740.14791.1 vs. uniprot
Match: F3Y7C8_FISSO (30S ribosomal protein S7, chloroplastic n=2 Tax=Fistulifera TaxID=880756 RepID=F3Y7C8_FISSO) HSP 1 Score: 204 bits (520), Expect = 4.300e-65 Identity = 98/155 (63.23%), Postives = 128/155 (82.58%), Query Frame = 1
Query: 1 MSRRTNKKRKFPNADAVYDSFLVNLMISKILKSGKKTVAQKIIYEAFDIIKQRTNSQPLKIFEKAVKNVSPAVKIKAKRVGGSTYQVPIEVKKFRGINLGLCWIIQFARARSGKTIAIKLANEIIDASKGSGNSIRKRDETHRMARSNKAFAHFR 465
MSRR K++FP D VY S+LV+L+ ++ILKSGKKT+A+KI+Y+AFDII+++TN PL +FEKA++N SP V++KA+RVGGSTYQVPIEV FR NL L WIIQF+ R G+++AIKLANEIID + GN+I+K++ETHRMA +NKAFAHFR
Sbjct: 1 MSRRNISKKRFPQPDPVYSSYLVSLLTTRILKSGKKTIARKIVYQAFDIIRKKTNEDPLSVFEKAIRNASPIVEVKARRVGGSTYQVPIEVSSFRATNLSLRWIIQFSNKRVGRSMAIKLANEIIDTANDIGNTIKKKEETHRMAEANKAFAHFR 155 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig68740.14791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig68740.14791.1 >prot_H-paniculata_contig68740.14791.1 ID=prot_H-paniculata_contig68740.14791.1|Name=mRNA_H-paniculata_contig68740.14791.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=157bp MSRRTNKKRKFPNADAVYDSFLVNLMISKILKSGKKTVAQKIIYEAFDIIback to top mRNA from alignment at H-paniculata_contig68740:241..711- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig68740.14791.1 ID=mRNA_H-paniculata_contig68740.14791.1|Name=mRNA_H-paniculata_contig68740.14791.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=471bp|location=Sequence derived from alignment at H-paniculata_contig68740:241..711- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig68740:241..711- >mRNA_H-paniculata_contig68740.14791.1 ID=mRNA_H-paniculata_contig68740.14791.1|Name=mRNA_H-paniculata_contig68740.14791.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at H-paniculata_contig68740:241..711- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |