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Homology
BLAST of mRNA_H-paniculata_contig6866.14785.1 vs. uniprot
Match: D8LT64_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT64_ECTSI) HSP 1 Score: 198 bits (503), Expect = 4.110e-57 Identity = 109/163 (66.87%), Postives = 131/163 (80.37%), Query Frame = 3
Query: 135 RRWKCGVCSAKAGDLVCSGCVGQEAERRRQTRAHRLAALRVVRETAAAAVQERTNSIAREAELEREAAEEVRLREEIRKVTQRVAEERIQVASAAFSLKHQRDLLAAADFRLAQEQDSVVELEEALLRGLRRHAADAARVLRQRRWRKVVQIFVLLPIEPSLP 623
R WKCGVC+AKAGDLVC CV +EAERRR RA RL AL VRE A A QER ++ +A L++E A+E RL++ +R+V +RVAEERI+VASAAF+LKH RDLLAAA+ L++EQ S VE+ EALL GLRRHA DAAR LRQRRWRKVVQ+FVLLP+EPS+P
Sbjct: 6 RGWKCGVCNAKAGDLVCGACVTREAERRRAERAKRLGALESVREAATVAAQERGVAVQHDARLQKEEADECRLKDHVREVAKRVAEERIKVASAAFALKHHRDLLAAAESHLSREQASAVEMNEALLIGLRRHAEDAARTLRQRRWRKVVQLFVLLPVEPSMP 168
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 200.7 |
| Seed ortholog evalue | 7.1e-49 |
| Seed eggNOG ortholog | 2880.D8LT64 |
| Hectar predicted targeting category | other localisation |
| EggNOG OGs | 2E6RT@1,2SDEH@2759 |
| Ec32 ortholog description | UV radiation resistance protein/autophagy-related protein 14 |
| Ec32 ortholog | Ec-12_005410.1 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 3 |
| Model size | 667 |
| Cds size | 645 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6866.14785.1 >prot_H-paniculata_contig6866.14785.1 ID=prot_H-paniculata_contig6866.14785.1|Name=mRNA_H-paniculata_contig6866.14785.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=215bp
MVASTPAGPIGQAAGATAAATAATTAIHPQRARSGSTTRRWKCGVCSAKA
GDLVCSGCVGQEAERRRQTRAHRLAALRVVRETAAAAVQERTNSIAREAE
LEREAAEEVRLREEIRKVTQRVAEERIQVASAAFSLKHQRDLLAAADFRL
AQEQDSVVELEEALLRGLRRHAADAARVLRQRRWRKVVQIFVLLPIEPSL
PRESGGSGGGGGDAG back to topmRNA from alignment at H-paniculata_contig6866:6072..11379- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig6866.14785.1 ID=mRNA_H-paniculata_contig6866.14785.1|Name=mRNA_H-paniculata_contig6866.14785.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5308bp|location=Sequence derived from alignment at H-paniculata_contig6866:6072..11379- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAATAAACAGCCTTTGTGGGATGGTAGCATCGACGCCAGCAGGACCTATA
GGTCAAGCGGCAGGAGCAACGGCTGCTGCCACCGCCGCCACCACCGCAAT
ACACCCGCAACGTGCCAGGTCAGGATCAACCACACGCCGTTGGAAGTGCG
GTGTGTGCAGTGCGAAAGCCGGGGACTTGGTGTGCAGTGGGTGCGTGGGG
CAGGAAGCCGAGAGGAGGAGGCAGACACGGGCACATAGACTAGCAGCGTT
GAGAGTCGTGCGCGAAACCGCCGCGGCTGCCGTGCAGGTGTGTATGTGAG
TGTGTAGATACCAGTATCTGTATGCGTAAGATACTGGAGTCACGTTTGAG
CTTGACTGCAATGCTGCTGCACGATTCAGGCATTTAGCTTCTTTTTTTTT
CTTTATTTGTGGCGTATTTTTCATGTTTCATTTAGTGTACAAGCAGTGTG
TTCGTGGGGGCAGGCAGGCAGGCTTATTCTCGTGATGTGGGCGACGGGCG
ACATTTGTGTCGTGTCTTCGATGTCGTTTTGACCTTAGCGGTCAACGATG
TTATTTCGTTTGTGCTATTGTGTGAGTGTAATGTACTGTGCTTCAGAGAT
GCAATATATCCCATCTGCTGCTTCGTAGGTGCATTCACTTACTTCTGCAC
TCCTCGGTGTTTGTTGATATTAAATGAACCCTTTAGGGACTCGCACCTCG
AAATATGGTTCCTGGGATCTGTTTTATGGCCGTTGTGTTCTTGATGCAGA
AAGGCGTTATCCGGTGCAAAATAACAATAGATGAGCATGACTGGAAGTCT
AGTCAGAACTCTTTTAGTGGGTGCAACCCCCACAATGCCTCTACCCGGTT
CGGCCGAACTGGGGTGGCGCCAACCCCGCAGAGGAATAAATATCTCTGTT
CTGTTAAAGGAAATGTAGACATAACTTTGGTAAAATACTCAAGTATGGAA
GCATCGGTAAAGGTTTTTGCCTCAGCCTTCCGGGGCTTAAAAATAATAAT
AATAATAATAATAAAAAATAGAGGCGATCGTATGGCCGAGAGAAGACTTG
TTTATCGTCAGTTGAAAACAGTACTCTGGTTGATTCGCGTCGTCGTAATA
TAAACGGATTCAGAGTCATGATCCGTCTAGCAGGGTTGTTCCGCACGATC
GATGACCTACACATACACGCATAACACCCAGCAGCGGACAGTGAGGATGG
ATCGCCACGTTTGTGCGTGATCATGATAGCGTCAGTTGGTGCTCCCACTA
CGCATCTGCCACTCCGGCACTCCCTGTAGGTCAGGCTCTCTCTTTGCCGT
GGAGTATTCGCTTGGTGTACATAGTATAAAAGGAAGCAGTGCACAAGAGG
TAACATTTGACTCAGCTCTGGCATCCAGAGAAAAAAGGGGCTGCTTCCTT
TTACGTATAGCTCTAAAGGCGTCGGGTGCACTGTGGCCCAGTTGATGTAA
AAAGGAGTTATTTAGTTGCTGAACGGCCCACGTTCTACAGGGAGGCACGT
CTCCAAAAGCCGGACGGGGTGCATGCAACACAGCACAGCGAATATTCTTC
TGCTCGTGATGCGTGTACGGTGGTGTATGTCCTGCCGCCCATACATTTCG
GTCTCCAGTTGTCTTCTCTTATCTGTGTACGCAATAGTAGTTTGGGCTCC
TGTCGCCGTTAGCATCCTTACCCAAACTGGACGGTGGCGGAGCTTCTTTA
CCCAGACTAATGTGATTTAAATGAAGGTAGGATATGGGTGATCGTGCAAT
CATGTATTCTTCTCTCTAGTAGGCGTGAAAGCGATTGTTGTGCTGTCCAT
GATGGGCAGTGTTCATGAGGCGTGAAGTCAAGGCTATGGGACGGAAGCAA
ACGCATACTCCCACTCCACTGAACCCAACGTTAGCCGCCAGCGGACGTAT
GTCCTCACTCAAAAATGTCTCCTGCGAGAATAACGGTACTGCTATGTCAC
ACGATGGAGCGGCAGAAGTTGTTTTGACGTACTGGTGTGCTACTCTCTCA
ACTAAGCCATAGACGCAATGGTGGTCACATGGTAAGTCGTTAATATCCTG
CCCTGCTGCCCCAAGGGGTCCTCCGAATCCATATTGTTGGAACTCCCACT
TTCAGCTCCGATAAAAAAGAAATTACCGTAATTTTTTTTTTCTCGGTGGG
TCGCTAACTATTGACATTATCGACTGTATGCCATGTTCCACGTCGCCAAT
TCAGCTCGTAACTTGACAAGCTTATACTTTACAAAAGGAACTGTGTTGAA
AAACACAAAATATTGTTGCGGCCGTTTTTGTTGTCCACTGGTATTTCCCC
CAAGAACAATGCTCGACTCCGGGCAGGTCGGACTGTTGTAGGCCCTGTGC
ATCATTCACCACAAATACGCGGGCGATAACTAGTCTCTAGTCTAAAAATT
GCTACCTACTCGGGTCAGTCAATTAAACCTTCTTTCTACACGAAACTGCG
GTGATCCACACTTGATTGTGAGCAGACGAGAAGTATTTACGCGTGCAATC
CTGACCTGTTTGCTATGTAGCGTGAGACTGCCCCCGCTCACCCACGCTGC
GACATTCAGCATGTGCAGAACTGCTGCACCATGTTGTGAAAAAAATATGT
TGCTGCTTTCTTCTTGGGCTTCGTCTCCGTCGTTACCGGATGTATCCGTT
GTTGATTTTGTCTGTGGATTAATGGGGAGGGATGTGTGAAATGGACGTAG
CAGCCTAGTGTGGGCGTGTTGCATGTTGGACAAGGGGATATAGTCACTTT
GACTAGTTTAGGTTAGAGTTGGGTATTTAGATCCATTTTTTGGGCTACCA
GATCTACTCTTGGGCATGAAGTATTACTCTTTCTTGAACGCTCGACATGC
TTGAAGTCTACACGAATCGCGTCTTCAAATCTTCAACCACGAGGTTACTC
CTTGGTCCATCTTCTGAACACAACGTCCAGCCTTGGCCGTTTTGCGTAGC
TTGGATGATGACATATTGCTGTTCTCTTGTTGCTGCGCGTTTGTTTTTTT
TAAATGTTGCTTTCAACATCTCTTACCAAGCATGTTAACACACTTGTGTT
TCGAAAAATTTCAACCCCGTCGGCCGTTTGTTTCCAGAGTATTTTGTGGA
TTTGTGACGAGTTTGTTCGTTTTTCGGCAGTTTCGTTGAGTGTTCCAGGT
CATGATTACGGAGGCTGCCTTCTGCTGAAAATGGTTGGCTCCCCAAAAAG
GGGTCAAGAATCTGAAGCTTTACAGCAGCGCAATAAAAAATATGTTCATA
GCAATTAACAACCGTTGGACAATGGCAAAAACAACAACTGTTTGGGGGCA
ACAACTTGGAAAGCACGAGGGATTTTTACCCCAATTGCTAAGGTTTGCTG
TGTTTCGTTTTTCGGCTTTTATTTTTTTTATATTGGTGTACGCAGGAGCG
TACGAACTCCATCGCCCGGGAAGCGGAATTGGAGAGGGAAGCTGCCGAAG
AAGTTCGGTTGAGGGAGGAAATACGTAAAGTCACACAAAGGGTCGCTGAA
GGTAATTCTTGGTTTGTTCGAAGCTTTACTCATTCTAGAAAACCCTTCAC
TTACGACTTTTGCGATACCCCCCCCCCCCCCGTTCTCCCTCGACCGACGG
AGTCAGGTTTGTTTCGGGGTCGAGTATTCAATGTTTGAGATCAGCAATGC
TATATATGTATGTATATATATGTACACACACAGGTCGTACACACAGTTGA
GTCTCGTGTACATGTGGTGGCCACCTTAGAAACACCCAGAAAGGGATTGT
AAATAAAAAAACCAACGTCTGGGATGAATAGCTACCGTAATTTTCACATT
GATAGTATTTTGTAGACACTCATGTTTTCTGCGTCAATATATATTTCACA
CCCGGACAAATACGAATAATTGGCGTATTCGCCATGAAAAAAAACAACAA
AAAAAACTCGCCTGAGTTTTAGAATGAGGCTGTATATTTCTGTGTGCCCC
GGACCATCGACAACTGCCAATAATACTCGTAAATCGAATGGACAGGGGTG
GGTACTTTATTCTATGTGTCCCCTCATTCCGAATACTTCTTAATTTTCGT
GGCGATTACGCCAATTACTCGTATTTGTCCGGGGTGTTGTGTTTAGATAC
CTATATATTAATAGGTGTACGTGGAGACTATGTTTCCCTACTGTCGTAGA
TCTTGCGTCATGCACCCACAAGATGACGATATGGGTATGTTTGGTTCATC
TCGACCGGCTGATGACAGTGACACCTTGCGGGAAAGATCCTTTTTATTTC
CCCGCGCACAGCCTGTTGGATATCTACAACCCCTCTAAATAGACGAAGCT
TTAAAAATGTCCGAAGGAAGTCTTCGCACACCAGGGTCACAGGATATCTG
CCATTACTCTGGTTCACGACAAGAGTAGACCGTAGACAGGGAGAAAACCA
CCTATTCAACATGTAGAGCGAGAGCGGGCGCAACACACGAGGATTTTTTT
TGTAATTGGTCAAATTGAGATAATAAAAACGAGGCCTACCACCACCTACA
CCGCTGATTTTGGAGGTGAAGTTGAAGCATGCGGTAGAGAATGATTTTTC
GAGGAGTATCGTGTGGTGACGGGGCCAAGGGGCACGGCGATAATATTTTA
TCAGCGCATACCCCAACGTAGTGTAGGATAAGTCTATCAAACCTCGACTC
TGTTTCGAAGATTGACACTTCTTTAGAATCGTGCTCTTGTGATGCGCCGA
ACTAGATCTAGTCAATGCATTTTCCGTGTGTTCTGGTGCGGTGTATTCGA
TGCGAAGTTGAGGGCAGCTAGCCTGTCTCCCGAATGCACACGCACCCATT
TCTGCCAATTAACCGTGTTCGTTCCTGGCTTTCCCGCCCTCTCAGTCTCA
TCTCTGCTTGCTGCCTTTTGCCTGCCCTCTCTGTCAATATCTGCCTGCCT
GCCTGCCTGCCTACCTACTTGCCCCCCGTCGCGTTTCATCTCATCTCGCC
TTGTCTCGCTTGATTCGGGTTTGATCTTCTCGTTACCCAACGAAACGACA
TGTGTACACAATCACACATACACACTAAAAAAAAAGAGCGAATACAGGTG
GCGAGCGCAGCCTTTTCCCTCAAGCACCAGAGGGACCTCCTCGCTGCGGC
CGACTTCCGCCTCGCCCAAGAACAAGACTCCGTCGTGGAGCTAGAAGAAG
CCCTGCTCCGAGGCCTCAGGCGGCACGCCGCGGACGCGGCGCGCGTGCTC
AGACAAAGGCGCTGGCGCAAGGTGGTGCAGATTTTCGTTCTCTTGCCAAT
CGAGCCTTCGCTTCCGCGCGAAAGTGGCGGTAGCGGTGGCGGTGGTGGTG
ATGCGGGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig6866:6072..11379- >mRNA_H-paniculata_contig6866.14785.1 ID=mRNA_H-paniculata_contig6866.14785.1|Name=mRNA_H-paniculata_contig6866.14785.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1290bp|location=Sequence derived from alignment at H-paniculata_contig6866:6072..11379- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAGCATCGACGCCAGCAGGACCTATAGGTCAAGCGGCAGGAGCAAC
GGCTGCTGCCACCGCCGCCACCACCGCAATACACCCGCAACGTGCCAGGT
CAGGATCAACCACACGCCGTTGGAAGTGCGGTGTGTGCAGTGCGAAAGCC
GGGGACTTGGTGTGCAGTGGGTGCGTGGGGCAGGAAGCCGAGAGGAGGAG
GCAGACACGGGCACATAGACTAGCAGCGTTGAGAGTCGTGCGCGAAACCG
CCGCGGCTGCCGTGCAGATGGTAGCATCGACGCCAGCAGGACCTATAGGT
CAAGCGGCAGGAGCAACGGCTGCTGCCACCGCCGCCACCACCGCAATACA
CCCGCAACGTGCCAGGTCAGGATCAACCACACGCCGTTGGAAGTGCGGTG
TGTGCAGTGCGAAAGCCGGGGACTTGGTGTGCAGTGGGTGCGTGGGGCAG
GAAGCCGAGAGGAGGAGGCAGACACGGGCACATAGACTAGCAGCGTTGAG
AGTCGTGCGCGAAACCGCCGCGGCTGCCGTGCAGGAGCGTACGAACTCCA
TCGCCCGGGAAGCGGAATTGGAGAGGGAAGCTGCCGAAGAAGTTCGGTTG
AGGGAGGAAATACGTAAAGTCACACAAAGGGTCGCTGAAGGAGCGTACGA
ACTCCATCGCCCGGGAAGCGGAATTGGAGAGGGAAGCTGCCGAAGAAGTT
CGGTTGAGGGAGGAAATACGTAAAGTCACACAAAGGGTCGCTGAAGAGCG
AATACAGGTGGCGAGCGCAGCCTTTTCCCTCAAGCACCAGAGGGACCTCC
TCGCTGCGGCCGACTTCCGCCTCGCCCAAGAACAAGACTCCGTCGTGGAG
CTAGAAGAAGCCCTGCTCCGAGGCCTCAGGCGGCACGCCGCGGACGCGGC
GCGCGTGCTCAGACAAAGGCGCTGGCGCAAGGTGGTGCAGATTTTCGTTC
TCTTGCCAATCGAGCCTTCGCTTCCGCGCGAAAGTGGCGGTAGCGGTGGC
GGTGGTGGTGATGCGGGGAGCGAATACAGGTGGCGAGCGCAGCCTTTTCC
CTCAAGCACCAGAGGGACCTCCTCGCTGCGGCCGACTTCCGCCTCGCCCA
AGAACAAGACTCCGTCGTGGAGCTAGAAGAAGCCCTGCTCCGAGGCCTCA
GGCGGCACGCCGCGGACGCGGCGCGCGTGCTCAGACAAAGGCGCTGGCGC
AAGGTGGTGCAGATTTTCGTTCTCTTGCCAATCGAGCCTTCGCTTCCGCG
CGAAAGTGGCGGTAGCGGTGGCGGTGGTGGTGATGCGGGG back to top
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