mRNA_H-paniculata_contig6864.14782.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6864.14782.1
Unique NamemRNA_H-paniculata_contig6864.14782.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6864.14782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6864contigH-paniculata_contig6864:6737..10203 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size808
Cds size450
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6864.14782.1prot_H-paniculata_contig6864.14782.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6864 6737..9845 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930821.3165727-CDS-H-paniculata_contig6864:6736..69091622930821.3165727-CDS-H-paniculata_contig6864:6736..6909Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6864 6737..6909 -
1691481467.7848132-CDS-H-paniculata_contig6864:6736..69091691481467.7848132-CDS-H-paniculata_contig6864:6736..6909Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6864 6737..6909 -
1622930821.3280585-CDS-H-paniculata_contig6864:7697..78951622930821.3280585-CDS-H-paniculata_contig6864:7697..7895Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6864 7698..7895 -
1691481467.799911-CDS-H-paniculata_contig6864:7697..78951691481467.799911-CDS-H-paniculata_contig6864:7697..7895Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6864 7698..7895 -
1622930821.3399875-CDS-H-paniculata_contig6864:9766..98451622930821.3399875-CDS-H-paniculata_contig6864:9766..9845Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6864 9767..9845 -
1691481467.814372-CDS-H-paniculata_contig6864:9766..98451691481467.814372-CDS-H-paniculata_contig6864:9766..9845Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6864 9767..9845 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930821.3579943-UTR-H-paniculata_contig6864:9845..102031622930821.3579943-UTR-H-paniculata_contig6864:9845..10203Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6864 9846..10203 -
1691481467.8227093-UTR-H-paniculata_contig6864:9845..102031691481467.8227093-UTR-H-paniculata_contig6864:9845..10203Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6864 9846..10203 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6864.14782.1

>prot_H-paniculata_contig6864.14782.1 ID=prot_H-paniculata_contig6864.14782.1|Name=mRNA_H-paniculata_contig6864.14782.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=150bp
MAEQKRHPPHHPPGGGTKQPPSATSKARGLVPAETEKGDSSRMSRMVGQR
GPKGVEMMKGPTRPKFTLSTSSHFSEDNEVDTSGRLPFGPPPDQVQVLDH
PLRHPGTPTRRSKNSMPIPNESRSSNLEHDYDTVGPLPSDTMGGVGEATG
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mRNA from alignment at H-paniculata_contig6864:6737..10203-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6864.14782.1 ID=mRNA_H-paniculata_contig6864.14782.1|Name=mRNA_H-paniculata_contig6864.14782.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3467bp|location=Sequence derived from alignment at H-paniculata_contig6864:6737..10203- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAACAGATGCGACAGAGACAGCAAGAGAGGATGTAATGTTTCGCGCATT
TTCGTGTGGTGAAGGTGAAAATTGAAAATAGGCAGGTGCAAGTTATTTAC
TCTGGGAATGAGAGCCGCCACAGAGTGTCACCCGAACACAGCGAAATCAT
CCTCACCAGGCTGTTCAAGCACAATCAATTTGGTAATTGCCAATTGCCCG
GGAGTTTCCGTGATACAGATAGGCGAGCCGCTTCTCAATGTACCATATAT
ATGGCAGTGAAGACAAACATCTCTACGTCAGCAGTGCATGCATCCCACTG
TGGTGTAGTTAGGCCTACCTTTATTCTGCATCTATACAATAAGTAACACG
TTGGGGCAATGGCAGAGCAGAAGCGCCACCCACCGCATCACCCGCCTGGA
GGTGGAACGAAGCAGCCACCTTCAGCTACAAGTAAAGGTGATACAATACA
GTCAATTAGACAAGAAATTTCGTCTCGGAAACAGCGACTCTACCAGGGTC
TGAGTGCTTAGGCCAACTCCGTGTTGTGCTGCGTCGAGACTCGCATACAG
CCCAGCTAACACGGATTATTTGCTGAGAAGCCTATCTTGTTGTCGCGGTG
CACATTAGCTTTCAGTAATGCACCGACAGTACAGCAGTACAGCTTGCGGC
CCTGCTCTATTTCAATATAACTTATCCATCGACGCATTCGTATTTCAGTG
AGGTCAAGCGGTTGTACAAGGGTCAACGGTTTTTTGCAATGATGGAGTGC
AATAATAACGCACCAAACGACACGGGGGCGTAGCCGCCGCTTTGTATAGA
ATATACACACGCATGTGATTCTGGCTCGTACAGTTGTGGGGAAAAAAAAG
AATGGGCACAGTTTCCCTTCTGGTGCTTTTGTACGCGATTATCCTAGGGA
TACCGTAATGCGATGACGTGATGGTGATCGTCATTTCGGAACAGTTTTCA
AATCTATGCGGGACATAGTGCACGCTGCAAGCGCAGCAAGCCGTTACGCG
TGGGTCGAAGACAACGCAACGATTGGCCAAGTCTACTCTTGGCTGGACTG
CTAAATTAGCATACTGTATTGTGTTAGAGTTGTCTTCTGTAATAACATTT
CGTATCCGGGAAAACGTAAAATCTAGATCGTTTTTCGTGGGAAATGTGGT
CGGTTGGCAACACCAACACCTCCGACACCAAGAATCGCGTGTTTTGTCGA
CAGTAGAGAACTTTCTTGTTCTCAATTTATCCGGAATCTGTCCGTTTCAT
AGGGCTTACCAATATCTTCACCAGTCCCCGCGATTTGTCAATGGCGCCTC
TCCCGAGATCCTGTCGTCTTGTTGCGTATCATTTTTTCGGAACAGTTTGA
TTTCGTTAGTTTTGATGGCATGTTGGATTTTGAGGTATTTCCCTTTTCGA
ACAGGAAGTAAAGGTTCCCCCCTCCTCGTTGCCAAGTAAATTGATGTACG
TGATACTTTGAACTTACGGTAATGTTGTTGAAATGCCGCCACGACCTAGC
TAGCAGTCGTTGCGGCGGCGTTAAACGATGCAGCCTTTTGGGCCGATTTA
GGCTCTACAATACTCTTGTTTGACCACGTGAAGGACTAGATATCAGAGTT
AGGGTTTCGGGCTGGGGTTAGCAGCGTCGCTCCTCTCTCACTTTTACAAT
TTTTCGATGACGAACTTAAGGATGTGCGCCTCATTCGGTCCATGAGGGTG
GGTGGGTTGGGGGAGAGACTTCAACATTAACGAATTTCCCCGAGTTGCTC
GGGTGGCATATCTTTTTATGTTGGCTGAACTAAGTCGGCTTGTGATATTT
CATGGGTACTCTGAACATATGCAATCAATCACAAGTCAGTACAATACATG
GATCATGACTCGGTTCAAACCGTACCTACTTGACTGTTGGTTTAGGCGTT
GCCTTGAGCCCCACGTTTTTATTCAAGACCTTCGACGTTTTGATTGATTA
CTGTTGGTTGTGGATGCATGCCTGTATCCATAATTTCAACTATCAGTCAC
GGAATTGCTCTCTGCCCAAATATTTTTGCTCGTTTTCATGCTTTTTGCCG
TAGGACATGGGACCGAAAGTCAGTCAGTAAGTTCAATACAGCAGCAGTAT
GTGGGGGGCTACATCGCCACTTCCATCCTTTGTCTCCTCGATGGATTTAG
ACGCCATCTGTTTGCCCGCCTCCACGTCGGTGCACTGTCTGTAGTGTTGC
GCAAGTTAATGGTCTCTCACAGATTTGTCACCACCCCGCCCCCCCCTCGT
CCAAACACCACTGCCCCCTCCCGTCATCCTCGCTATCGACCAAAACATCG
ACACTAAGCACGCGGCCTTGTCCCTGCGGAGACAGAAAAAGGAGATTCTT
CTAGAATGTCGAGAATGGTCGGGCAGCGCGGCCCCAAAGGGGTGGAGATG
ATGAAAGGCCCCACGAGGCCAAAGTTCACATTGTCGACCTCAAGCCATTT
TAGCGAGGATAACGAGGTAGATACCTCCGGTCGTCTCCCATTTGGACCCC
CTCCAGGTGAGAGGTGATGCTTGTCCAGTTCTGGCATGGGAGGGGTAGAG
GTAGGTTTCCGTAAAAAAACAAAATGGGGGGGGGTGGACGGAGGCGTTAG
AGACAAAGCGGCAAGGAGGCTTCGTTGTGCCAAATTCGACCTGGTTACGG
TGGCACTTTTAAATTTGGGAGGGTGTACGGCATTTTTAGATGCAGTTAAA
GATTTTTTGGGGGTATAAATTTATAGTGATGGCTTTACCGGTGTATCCAT
GATGTGCATGCATGGGTCGAAGTGGAAGTTTTTGAGCGTTTTATTTTCTG
CTCTGACCCGCAATAGTAGCGATTAAAATTCATGCACACAGTACCTTGTA
CCTTGTCAATATTGGCTGCACACCTTGCTGGATCCGTTTTGTTTCGTGGT
GTGTGTAGAGCAGGACACTTGTTTCTTGTGAGGAACGAGTCGTACGTGAC
AAACCGCCCTCGAGCATTTGTTTTAAATAAAAAATAGTAATCTACTGCCA
ATAATCATTGAAGTACATGTTCAACACAAAAATGTACACAACCGGAAGTT
TCTCTTCGCAAAATCGCAAATGGAGCATGACAATTTCGGGGAACTAACCT
GCAGTACTTACTGACTATAGTAGCAGTAGAGTTAGATATGCATTTTGTCC
CAAATGGGCATGCATCGGTAGTAGGCATGAATGGTGTTGTCCATTCTCAT
GTGAACATGCCTCCCCCCCTTTCACCCTGCCCTCCCCTCCCCCCCCCCGT
CGACGCGCGTATTCCTAATTTCCGGTTGAAATGTGAGACAGTAGACCAGG
TTCAGGTTCTAGACCATCCCTTGCGTCACCCAGGCACACCCACAAGGCGA
TCTAAAAATTCGATGCCTATCCCTAACGAAAGTCGCTCTTCAAATCTCGA
GCATGACTACGATACCGTCGGTCCCCTGCCTTCCGACACGATGGGAGGGG
TGGGGGAAGCAACGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig6864:6737..10203-

>mRNA_H-paniculata_contig6864.14782.1 ID=mRNA_H-paniculata_contig6864.14782.1|Name=mRNA_H-paniculata_contig6864.14782.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at H-paniculata_contig6864:6737..10203- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAGAGCAGAAGCGCCACCCACCGCATCACCCGCCTGGAGGTGGAAC
GAAGCAGCCACCTTCAGCTACAAGTAAAGATGGCAGAGCAGAAGCGCCAC
CCACCGCATCACCCGCCTGGAGGTGGAACGAAGCAGCCACCTTCAGCTAC
AAGTAAAGCACGCGGCCTTGTCCCTGCGGAGACAGAAAAAGGAGATTCTT
CTAGAATGTCGAGAATGGTCGGGCAGCGCGGCCCCAAAGGGGTGGAGATG
ATGAAAGGCCCCACGAGGCCAAAGTTCACATTGTCGACCTCAAGCCATTT
TAGCGAGGATAACGAGGTAGATACCTCCGGTCGTCTCCCATTTGGACCCC
CTCCAGCACGCGGCCTTGTCCCTGCGGAGACAGAAAAAGGAGATTCTTCT
AGAATGTCGAGAATGGTCGGGCAGCGCGGCCCCAAAGGGGTGGAGATGAT
GAAAGGCCCCACGAGGCCAAAGTTCACATTGTCGACCTCAAGCCATTTTA
GCGAGGATAACGAGGTAGATACCTCCGGTCGTCTCCCATTTGGACCCCCT
CCAGACCAGGTTCAGGTTCTAGACCATCCCTTGCGTCACCCAGGCACACC
CACAAGGCGATCTAAAAATTCGATGCCTATCCCTAACGAAAGTCGCTCTT
CAAATCTCGAGCATGACTACGATACCGTCGGTCCCCTGCCTTCCGACACG
ATGGGAGGGGTGGGGGAAGCAACGGGGACCAGGTTCAGGTTCTAGACCAT
CCCTTGCGTCACCCAGGCACACCCACAAGGCGATCTAAAAATTCGATGCC
TATCCCTAACGAAAGTCGCTCTTCAAATCTCGAGCATGACTACGATACCG
TCGGTCCCCTGCCTTCCGACACGATGGGAGGGGTGGGGGAAGCAACGGGG
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