mRNA_H-paniculata_contig6863.14780.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6863.14780.1
Unique NamemRNA_H-paniculata_contig6863.14780.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6863.14780.1 vs. uniprot
Match: D7G2C7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C7_ECTSI)

HSP 1 Score: 400 bits (1028), Expect = 1.670e-121
Identity = 232/290 (80.00%), Postives = 247/290 (85.17%), Query Frame = 1
Query:    1 GGLTVLGGGFLTVLSVLGSSIAHVNPTFVFDEMIVTHYCGGLRGLVSLVLAALTQQAVAQGYKVVGSMELLGDPLSLVSKLGDSVVQFFHKTSAEMTGSADTIGAGAKVLMKGLVGGTFGSAAKITGSLEGLIRGLSGTAILENDLYPGETGDGDDYRGDHGEVHVLEHGMKQGGKVFYESMRVGISGLVDRPMEGAKDEGFAGFIAGMAKGIXXXXXXXXXXXLGAVSRAAEGVDASTRLSDEKRMGRRRAARTFVASSYSTGRALTPVTPTDLVKHVPRKFATLWAGT 870
            GGLTVLGGGFLTVLSVLGSSIAHVNPTFVFDE++VTHYCG   GL  LV+ ALTQQAVAQGYKVVGSMELLGDPLSLV KLGDSVVQFF KT AEMTG ADT+GAGAKVL+KGLVGGTFGSAAKITGSLEG+IRGLSGTAI EN+       DG   R    EV  LEHG+KQGGKVFYE+M+ GI+GL+DRP EGAK+EG AGFIAGMAKG XXXXXXXXXXX  AVSR  EGVDASTRLSDEKRMGRRRAART   S   TGRAL P+TPTDLVK+VPRKFATLW GT
Sbjct: 1098 GGLTVLGGGFLTVLSVLGSSIAHVNPTFVFDELVVTHYCGSAGGLTGLVVTALTQQAVAQGYKVVGSMELLGDPLSLVGKLGDSVVQFFTKTKAEMTGDADTVGAGAKVLVKGLVGGTFGSAAKITGSLEGMIRGLSGTAIAENESEMEREEDGQLQR----EVKGLEHGVKQGGKVFYETMKAGITGLIDRPAEGAKEEGLAGFIAGMAKGXXXXXXXXXXXXXXAVSRVTEGVDASTRLSDEKRMGRRRAARTAFRS-VPTGRALPPLTPTDLVKNVPRKFATLWVGT 1382          
BLAST of mRNA_H-paniculata_contig6863.14780.1 vs. uniprot
Match: A0A6H5KWU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU7_9PHAE)

HSP 1 Score: 377 bits (967), Expect = 2.230e-111
Identity = 226/317 (71.29%), Postives = 244/317 (76.97%), Query Frame = 1
Query:    1 GGLTVLGGGFLTVLSVLGS---------------------------SIAHVNPTFVFDEMIVTHYCGGLRGLVSLVLAALTQQAVAQGYKVVGSMELLGDPLSLVSKLGDSVVQFFHKTSAEMTGSADTIGAGAKVLMKGLVGGTFGSAAKITGSLEGLIRGLSGTAILENDLYPGETGDGDDYRGDHGEVHVLEHGMKQGGKVFYESMRVGISGLVDRPMEGAKDEGFAGFIAGMAKGIXXXXXXXXXXXLGAVSRAAEGVDASTRLSDEKRMGRRRAARTFVASSYSTGRALTPVTPTDLVKHVPRKFATLWAGT 870
            GGLTVLGGGFLTVLSVLGS                           SIAHVNPTFVFDE++VTHYCG   GL  LV+ ALTQQAVAQGYKVVGSMELLGDPLSLV KLGDSVVQFF KT AEMTG ADT+GAGAK+L+KGLVGGTFGSAAKITGSLEG+IRGLSGTAI EN+       DG   R    EV  LE G+KQGGK+FYE+M+ GI+GL+DRP EGAK+EG AGFIAGMAKG XXXXXXXXXXX   VSR  EGVDASTRLSDEKRMGRRRAART   S   TGRAL P+TP DLVK++PRKFATLW GT
Sbjct: 2732 GGLTVLGGGFLTVLSVLGSRRVPCSLIVIALACRCSWVTILWAETLSIAHVNPTFVFDELVVTHYCGSAGGLTGLVVTALTQQAVAQGYKVVGSMELLGDPLSLVGKLGDSVVQFFTKTKAEMTGDADTVGAGAKLLVKGLVGGTFGSAAKITGSLEGMIRGLSGTAIAENESEMEREDDGQLQR----EVKDLEQGVKQGGKIFYETMKAGITGLIDRPAEGAKEEGLAGFIAGMAKGXXXXXXXXXXXXXXXVSRVTEGVDASTRLSDEKRMGRRRAARTAFRS-VPTGRALPPLTPIDLVKNIPRKFATLWVGT 3043          
BLAST of mRNA_H-paniculata_contig6863.14780.1 vs. uniprot
Match: A0A835YJU6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJU6_9STRA)

HSP 1 Score: 239 bits (611), Expect = 6.470e-67
Identity = 146/289 (50.52%), Postives = 178/289 (61.59%), Query Frame = 1
Query:    1 GGLTVLGGGFLTVLSVLGSSIAHVNPTFVFDEMIVTHYCGGLRGLVSLVLAALTQQAVAQGYK---------------------------VVGSMELLGDPLSLVSKLGDSVVQFFHKTSAEMTGSADTIGAGAKVLMKGLVGGTFGSAAKITGSLEGLIRGLSGTAILENDLYPGETGDGDDYRGDHGEVHVLEHGMKQGGK--------VFYESMRVGISGLVDRPMEGAKDEGFAGFIAGMAKGIXXXXXXXXXXXLGAVSRAAEGVDASTRLSDEKRMGRRRAAR 762
            GGL VLGG FL+ + VLG ++A ++PTFVFDE++VTHY G  R L + +   L QQ VAQGYK                           VVGSMELLGDPL+LV+KL DSV+QF   T AE  G   T GAGA++L+ G+VGG FGSAAKI GSLE +IRGLSGT + + +      G GD        V  L+HG ++GG+        V Y+S++ GISGLVDRPMEGAK+EG AGF+ GMAKGI           LGAVS+  EGVDASTR    +RMGRRR  R
Sbjct:  296 GGLAVLGGSFLSAVGVLGGTLARISPTFVFDELLVTHYFGSARELAAALARGLVQQGVAQGYKXXXXXXXXXXXXXXXXXXXPGSERSYKVVGSMELLGDPLALVNKLSDSVLQFLRTTQAEFRGEEPTFGAGARMLVSGVVGGAFGSAAKIAGSLEDVIRGLSGTEVADAE------GGGDT------RVRHLKHGFQRGGQXXXXXXXXVLYDSIQQGISGLVDRPMEGAKEEGVAGFLTGMAKGIVVAVAAPVAGALGAVSKVTEGVDASTRYRQLERMGRRREPR 572          
BLAST of mRNA_H-paniculata_contig6863.14780.1 vs. uniprot
Match: A0A7S2GN42_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GN42_9STRA)

HSP 1 Score: 182 bits (461), Expect = 6.100e-47
Identity = 115/279 (41.22%), Postives = 161/279 (57.71%), Query Frame = 1
Query:    4 GLTVLGGGFLTVLSVLGSSIAHVNPTFVFDEMIVTHYCGGLRGLVSLVLAALTQQAVAQGYKVVGSMELLGDPLSLVSKLGDSVVQFFHKTSAEMTGSADTIGAGAKVLMKGLVGGTFGSAAKITGSLEGLIRGLSGTAILENDLYPGETGDGDDYRGDHGEVHVLEHGMKQGGKVFYESMRVGISGLVDRPMEGAKDEGFAGFIAGMAKGIXXXXXXXXXXXLGAVSRAAEGVDASTRLSDEKRMGRRRAARTFVASSYSTGRALTPVTPTDLVKHVP 840
            G+ ++G    ++L VLGSS+AH+NPTF F+E+ +    G    L S +  +L +Q VAQGYKVVGSMELLGDP+SLVS +G  V QFF KT A+M G ++T G G K L +G+VGGTFGS AKITG+ + L+  ++G    +N   P   G                 G+  G +  +  +  GI+G+V RP+EGA+  G  GF+ G+ KG+            GAVS   E VDA+ +  DE+ MGRRR  R+       TG  L P+T + L +++P
Sbjct:  251 GVWLMGSSLWSMLVVLGSSLAHINPTFQFNELKLADSFGQRWDLASSIFMSLVKQGVAQGYKVVGSMELLGDPVSLVSNMGVGVYQFFRKTGADMLGESETRGEGVKHLFQGVVGGTFGSVAKITGAADTLLSAVTGQNERDNWQRPEHVG----------------QGIVIGSERVWRGVTEGITGIVVRPIEGAQQNGVPGFLFGLGKGVVGAVAAPVAGAFGAVSAVTESVDANLKYWDERPMGRRRNTRS------GTG-LLQPLTVSHLNENIP 506          
BLAST of mRNA_H-paniculata_contig6863.14780.1 vs. uniprot
Match: W7U3K2_9STRA (Ph domain containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3K2_9STRA)

HSP 1 Score: 149 bits (377), Expect = 5.030e-34
Identity = 98/278 (35.25%), Postives = 153/278 (55.04%), Query Frame = 1
Query:    4 GLTVLGGGFLTVLSVLGSSIAHVNP-TFVFDEMIVTHYCGGLRGLVSLVLAALTQQAVAQGYKVVGSMELLGDPLSLVSKLGDSVVQFFHKTSAEMTGSADTIGAGAKVLMKGLVGGTFGSAAKITGSLEGLIRGLSGT----AILENDLYPG-----------ETGDG----DDYRGDHGEVHVLEHGMKQGGKVFYESMRVGISGLVDRPMEGAKDEGFAGFIAGMAKGIXXXXXXXXXXXLGAVSRAAEGVDASTRLSDEKRMGRRRAARTFVAS 777
            GL ++G G + +L+ +  S+A ++  T VF+E++ THY G    L  +V+ +L QQA+ Q YK++G+M+LLG+PL+L    G  VV+FF +T AE+ G AD+ G G + L K ++GG F S +KITG++  L+  + G     A+ E  +              +T DG    D +RG       L  G+ +GG+VFY+S++ G+  + D P +GA  EGF+GF+ GM KG+           LG +SR     D +      + + RRRA R  + S
Sbjct: 3962 GLELIGTGVVQLLADMARSLAQLSGLTLVFNELLFTHYFGSHYDLGHIVVLSLRQQAITQSYKLLGAMDLLGNPLNLFLGFGSGVVEFFRRTQAELVGDADSKGEGLRRLAKAVIGGPFSSVSKITGTVASLLEEVVGVREMAAMAEEGMRDELSSSTARAIGHQTEDGGSSADGWRGRAPPPQHLGEGILKGGEVFYKSVKSGVKNIYDLPQQGASREGFSGFLKGMGKGVVGALAAPLIGTLGGISRV---TDTTAYFEKPRILRRRRAVRVALES 4236          
BLAST of mRNA_H-paniculata_contig6863.14780.1 vs. uniprot
Match: D8LB75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB75_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 2.140e-30
Identity = 92/257 (35.80%), Postives = 137/257 (53.31%), Query Frame = 1
Query:    7 LTVLGGGFLTVLSVLGSSIAHVNPTFVFDEMIVTHYCGGLRGLVSLVLAALTQQAVAQGYKVVGSMELLGDPLSLVSKLGDSVVQFFHKTSAEMTGSADTIGAGAKVLMKGLVGGTFGSAAKITGSLEGLIR-----GLSGTAILENDLYPGETGDGDDYRGDHGEVHVLEHGMKQGGKVFYESMRVGISGLVDRPMEGAKDEGFAGFIAGMAKGIXXXXXXXXXXXLGAVSRAAEGVDASTRLSDEKRMGRRRAAR 762
            L  +GG    +LS  G+ IA+ +PTF FD   + HY G     V+LV+ +  +Q V Q YKV+G +++LGDPLSL   +   V+ F  KT A        IG G+K L+KG+VGGT  SA+K+T +L+  +R          + +E+   P   G                 G+ QG   F  +++ GI+G+V +P+ GA+  G AGF+ G+ +G+           LGA S+   G+DA+TRL D++ MGRRR  R
Sbjct: 2612 LGAVGGVVWGLLSSFGAGIANASPTFNFDAYELEHYYGSKTQAVTLVVMSFVKQGVVQAYKVLGHIDILGDPLSLGMNISSGVIGFVTKTGA------GHIGEGSKDLVKGVVGGTASSASKMTDALDNFVREAGCMDAEAPSGMESTKAPEHLG----------------QGLTQGMMYFGHTVKDGITGVVMKPVRGARKNGAAGFVKGVGQGVVGLVAAPVSAALGATSKITAGIDATTRLLDDEPMGRRREPR 2846          
BLAST of mRNA_H-paniculata_contig6863.14780.1 vs. uniprot
Match: A0A6H5KB17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB17_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 4.300e-24
Identity = 97/257 (37.74%), Postives = 138/257 (53.70%), Query Frame = 1
Query:    7 LTVLGGGFLTVLSVLGSSIAHVNPTFVFDEMIVTHYCGGLRGLVSLVLAALTQQAVAQGYKVVGSMELLGDPLSLVSKLGDSVVQFFHKTSAEMTGSADTIGAGAKVLMKGLVGGTFGSAAKITGSLEGLIR-----GLSGTAILENDLYPGETGDGDDYRGDHGEVHVLEHGMKQGGKVFYESMRVGISGLVDRPMEGAKDEGFAGFIAGMAKGIXXXXXXXXXXXLGAVSRAAEGVDASTRLSDEKRMGRRRAAR 762
            L  +GG    +LS  G+ IA+ +PTF FD   + HY G     V+ V+ +  +Q V Q YKV+G +++LGDPLSL   +   V+ F  KT A        IG G+K L+KG+VGGT  SA+K+T +L+  +R          + +E+   P   G                 G+ QG   F  +++ GI+G+V +P+ GA+  G AGF+       XXXXXXXXXXX    S+   G+DA+TRL D+  MGRRR  R
Sbjct: 1516 LGAVGGVVWGLLSSFGAGIANASPTFNFDAYELEHYYGSKTQAVTQVVMSFVKQGVVQAYKVLGHIDILGDPLSLGMNISSGVIGFVTKTGA------GHIGEGSKDLVKGVVGGTASSASKMTDALDNFVREAGCMDAEAPSGMESKKAPEHLG----------------QGLTQGMMYFGHTVKDGITGVVMKPVRGARKGGAAGFVKXXXXXXXXXXXXXXXXXXXXXSKITAGIDATTRLLDDDPMGRRREPR 1750          
BLAST of mRNA_H-paniculata_contig6863.14780.1 vs. uniprot
Match: A0A484EGV5_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGV5_BRELC)

HSP 1 Score: 107 bits (266), Expect = 3.000e-20
Identity = 71/213 (33.33%), Postives = 112/213 (52.58%), Query Frame = 1
Query:    1 GGLTVLGGGFLTVLSVLGSSIAHVNPTFVFDEMIVTHYCGGLRGLVSLVLAALTQQAVAQGYKVVGSMELLGDPLSLVSKLGDSVVQFFHKTSAEMTGSADTIGAGAKVLMKGLVGGTFGSAAKITGSLEGLIRGLSGTAILENDLYPGETGDGDDYRGDHGEVHVLEHGMKQGGKVFYESMRVGISGLVDRPMEGAKDEGFAGFIAGMAKGI 639
            GG +++ GG   ++ ++GS+++  +PTF F E+++       + L S ++A   QQ V Q Y+++GS +++G+P+ LV  LG  VV+F   T  E+TG A T G G KVL K +V  +  S AKITGSL               D + GE  D +    D G +     G+K     F + +  G +G+  +P+EGA   G  G + G  +GI
Sbjct: 2287 GGHSIVFGGLSQIIGLIGSNLSG-SPTFSFSEIVIVRCFTTKQRLQSQLVANYVQQGVLQAYRLIGSADIIGNPIGLVEDLGSGVVEFLKITKGEITGDAQTRGEGVKVLGKTIVKSSASSVAKITGSL---------------DKFVGEFADENRQNDDDGSMSTDNAGIK-----FAKDLGRGFTGIFTKPVEGAMKGGVTGLVQGTVQGI 2478          
BLAST of mRNA_H-paniculata_contig6863.14780.1 vs. uniprot
Match: A0A485KYR2_9STRA (Aste57867_13032 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KYR2_9STRA)

HSP 1 Score: 106 bits (265), Expect = 3.970e-20
Identity = 82/248 (33.06%), Postives = 122/248 (49.19%), Query Frame = 1
Query:   34 TVLSVLGSSIAHVNPTFVFDEMI----VTHYCGGLRGLVSLVLAALTQQAVAQGYKVVGSMELLGDPLSLVSKLGDSVVQFFHKTSAEMTGSADTIGAGAKVLMKGLVGGTFGSAAKITGSLEGLIRGLSGTAILENDLYPGETGDGDDYRGDHGEVHVLEHGMKQGGKVFYESMRVGISGLVDRPMEGAKDEGFAGFIAGMAKGIXXXXXXXXXXXLGAVSRAAEGVDASTRLSDEKRM-GRRRAAR 762
            T  S++G  IAH+ P+F    +       +Y   LR  V  +  ++    ++Q YKVVGS+ELLGDP+ LV ++ D       +T  + TG + + G GA  LMK ++G   G+  K++  +  L++  +     E +  P                H  E G+ QGG VF  S+  G+SGLV +PMEGAK  GF GF  G+ +G            +G V + ++ V  +T L DEK   G RR AR
Sbjct: 2365 TAGSIVGG-IAHIQPSFFIQSISREDRFLYYDDFLRNTV--IWESIVMGCISQWYKVVGSVELLGDPVGLVHEITDGFALAVRQTKRDFTGKSRSKGQGAVTLMKTVIGAPSGAIGKMSNGVGDLLKKATHFDSQEMENEP---------------RHFPE-GVLQGGMVFGMSLAHGVSGLVTKPMEGAKQNGFGGFAKGVGQGALGLVASPFVGAIGVVEKLSQSVHNTTHLMDEKYFEGTRRIAR 2593          
BLAST of mRNA_H-paniculata_contig6863.14780.1 vs. uniprot
Match: T0PMD4_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PMD4_SAPDV)

HSP 1 Score: 103 bits (258), Expect = 2.830e-19
Identity = 79/246 (32.11%), Postives = 120/246 (48.78%), Query Frame = 1
Query:   34 TVLSVLGSSIAHVNPTFVFDEMIVTHYCGGLRGLVSLVLA--ALTQQAVAQGYKVVGSMELLGDPLSLVSKLGDSVVQFFHKTSAEMTGSADTIGAGAKVLMKGLVGGTFGSAAKITGSLEGLIRGLSGTAILENDLYPGETGDGDDYRGDHGEVHVLEHGMKQGGKVFYESMRVGISGLVDRPMEGAKDEGFAGFIAGMAKGIXXXXXXXXXXXLGAVSRAAEGVDASTRLSDEKRM-GRRRAAR 762
            T  S+LG  IAHV P F    +I+         L+  ++    L    + Q YKVVGS+EL+GDP+ L +++ D +     +T  +  G +D  G GA +LM+ LVG    +  K       +++  + +   E D  P                HV E G+ QGG +  +S+  G+SGLV +PM+GAKD+GF GF  G+ +G            LG + + ++ V  +T L D+K   G RR AR
Sbjct: 2362 TAGSILGG-IAHVTPEFAIHPLIMADKFVYKDDLMYNIILWDCLVGNMLGQWYKVVGSLELMGDPVGLFNEITDGIALAARQTKRDFKGESDKKGQGAVILMQTLVGAPSDAIGKAANGFGDILKKATYSKNQEADHEP---------------RHVPE-GLLQGGVLLGKSLANGVSGLVTKPMQGAKDDGFKGFAKGVGQGTLGLVASPFIGTLGVIEKLSQSVHNTTHLMDDKDFDGTRRIAR 2590          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6863.14780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2C7_ECTSI1.670e-12180.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWU7_9PHAE2.230e-11171.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YJU6_9STRA6.470e-6750.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2GN42_9STRA6.100e-4741.22Hypothetical protein (Fragment) n=2 Tax=Dictyocha ... [more]
W7U3K2_9STRA5.030e-3435.25Ph domain containing protein n=4 Tax=Monodopsidace... [more]
D8LB75_ECTSI2.140e-3035.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KB17_9PHAE4.300e-2437.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A484EGV5_BRELC3.000e-2033.33Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A485KYR2_9STRA3.970e-2033.06Aste57867_13032 protein n=1 Tax=Aphanomyces stella... [more]
T0PMD4_SAPDV2.830e-1932.11Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6863contigH-paniculata_contig6863:518..4634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score342.0
Seed ortholog evalue2.6e-91
Seed eggNOG ortholog2880.D7G2C7
KEGG rclassRC00055,RC00523
KEGG koko:K01870,ko:K12486
KEGG ReactionR03656
KEGG Pathwayko00970,ko04144,map00970,map04144
KEGG ModuleM00359,M00360
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
EC6.1.1.5
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko04131
Exons6
Model size1762
Cds size855
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6863.14780.1prot_H-paniculata_contig6863.14780.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6863 1165..3823 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930821.162074-UTR-H-paniculata_contig6863:517..5761622930821.162074-UTR-H-paniculata_contig6863:517..576Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6863 518..576 +
1691481467.7008834-UTR-H-paniculata_contig6863:517..5761691481467.7008834-UTR-H-paniculata_contig6863:517..576Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6863 518..576 +
1622930821.1902475-UTR-H-paniculata_contig6863:1127..11641622930821.1902475-UTR-H-paniculata_contig6863:1127..1164Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6863 1128..1164 +
1691481467.7139177-UTR-H-paniculata_contig6863:1127..11641691481467.7139177-UTR-H-paniculata_contig6863:1127..1164Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6863 1128..1164 +
1622930821.281556-UTR-H-paniculata_contig6863:3823..46341622930821.281556-UTR-H-paniculata_contig6863:3823..4634Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6863 3824..4634 +
1691481467.7741792-UTR-H-paniculata_contig6863:3823..46341691481467.7741792-UTR-H-paniculata_contig6863:3823..4634Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6863 3824..4634 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930821.2051969-CDS-H-paniculata_contig6863:1164..13081622930821.2051969-CDS-H-paniculata_contig6863:1164..1308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6863 1165..1308 +
1691481467.7246544-CDS-H-paniculata_contig6863:1164..13081691481467.7246544-CDS-H-paniculata_contig6863:1164..1308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6863 1165..1308 +
1622930821.220333-CDS-H-paniculata_contig6863:1801..19401622930821.220333-CDS-H-paniculata_contig6863:1801..1940Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6863 1802..1940 +
1691481467.7333488-CDS-H-paniculata_contig6863:1801..19401691481467.7333488-CDS-H-paniculata_contig6863:1801..1940Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6863 1802..1940 +
1622930821.2362933-CDS-H-paniculata_contig6863:2270..24191622930821.2362933-CDS-H-paniculata_contig6863:2270..2419Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6863 2271..2419 +
1691481467.7412972-CDS-H-paniculata_contig6863:2270..24191691481467.7412972-CDS-H-paniculata_contig6863:2270..2419Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6863 2271..2419 +
1622930821.2536597-CDS-H-paniculata_contig6863:3001..31921622930821.2536597-CDS-H-paniculata_contig6863:3001..3192Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6863 3002..3192 +
1691481467.75223-CDS-H-paniculata_contig6863:3001..31921691481467.75223-CDS-H-paniculata_contig6863:3001..3192Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6863 3002..3192 +
1622930821.2667933-CDS-H-paniculata_contig6863:3591..38231622930821.2667933-CDS-H-paniculata_contig6863:3591..3823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6863 3592..3823 +
1691481467.7617776-CDS-H-paniculata_contig6863:3591..38231691481467.7617776-CDS-H-paniculata_contig6863:3591..3823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6863 3592..3823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6863.14780.1

>prot_H-paniculata_contig6863.14780.1 ID=prot_H-paniculata_contig6863.14780.1|Name=mRNA_H-paniculata_contig6863.14780.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=285bp
MIVTHYCGGLRGLVSLVLAALTQQAVAQGYKVVGSMELLGDPLSLVSKLG
DSVVQFFHKTSAEMTGSADTIGAGAKVLMKGLVGGTFGSAAKITGSLEGL
IRGLSGTAILENDLYPGETGDGDDYRGDHGEVHVLEHGMKQGGKVFYESM
RVGISGLVDRPMEGAKDEGFAGFIAGMAKGIVGAVAAPVAGALGAVSRAA
EGVDASTRLSDEKRMGRRRAARTFVASSYSTGRALTPVTPTDLVKHVPRK
FATLWAGTANGHRAGDGQGGHGTVELDEECQRGR*
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mRNA from alignment at H-paniculata_contig6863:518..4634+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6863.14780.1 ID=mRNA_H-paniculata_contig6863.14780.1|Name=mRNA_H-paniculata_contig6863.14780.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4117bp|location=Sequence derived from alignment at H-paniculata_contig6863:518..4634+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGGCTGACTGTTCTAGGCGGAGGATTCCTGACGGTTTTGTCGGTGCT TGGGAGCAGGTAAGGCTGACGCATGCTATGAAAGGTTGTCACGCCTCGAC TTCTTTTAGCTTTCGTTGCAGTGAATTTTGCGCTGCCAAAAGGACATACT TCTATTTTCCGTGCAAGTGACTAGACATCGAGAAGGGGGATGAGTACGGG ATAGCCATGATTCCAAAACTCAAGATATCTGTCTTGCGCAGCCCATGCAG GAAGCCACATCGCGACGCCCCCCACCCTCCCCAGTTACCTTCTGCGAGGA GCTCTGGGGCAACGACACAAAATATCCAAGATACGTCCACTGGGCACCAC TGTCCGAGCCACTGCCAAGCGCCCTACTTCGCCATTCCAAAATATCCGGT GTCCATTAGTTTGGTGTTCCATTGCGCTATGATCACGTTGAATGCTCTTG ATGTGAACTAATTCTAAAACACGCTGCCAACGTATTGGCTCCCGCCTGTG AAAATACCGCGTGTACAATGTAAGGAGATCACTCCCCACGTGCCATACTT CCGTTCTTTTAACCCCCCCCCCCCCCCCCTTACCCCACACACCCTCCCCC TTTGCACCAGCATCGCTCATGTGAACCCTACATTTGTTTTCGACGAGATG ATCGTAACGCACTACTGTGGTGGCCTCCGGGGGCTGGTCTCACTAGTGCT GGCGGCCCTGACTCAACAGGCCGTGGCGCAGGGGTACAAGGTCGTGGGTT CTATGGAGCTGCTCGGAGACCCGCTGTCACTCGTCAGCAAGGCAAGCGAT GTTGCAGTGGGGGAGAGTGTGTCTCTAGTTGGGCAGTGCTTCTCAAATAT GCAGTGTGATACACGAAAATTGTTGTTGACTAATCGTCATGTGTTCGCTG AGGGGGCGTCGAGCTAAGTTGCTGTAGCATGAGAGTTAACCTTGGGTACT GCATGCGTCGGGTGGATCGATGACGCCCTCCGGCGGAGGGAGGCGTGAAA GAGCGCCAAGACGATGTTGCAGAAGTGTATTCTTGCGCTGAGGTGAAGCG ATTACATTATTGCTCGGTTGATGTGTGAAATTGTTTTGTGTTGTGGGTGC TACCATCATCACACTACCGCGCTTGTGAAGACGGAAATGGGAGAGCTCTA GGACCAGTACAGTACTCGCGGTGCGGCCACCACTGTCAAACTGCTTCGAT GGATATTGGCTCGGTGCTTTTGTCGTTCATGTGAGTTACGCGCAATCCCT CCCGTGTCGGTTTGTCTTGTTCGTGTTACTACAGCTGGGAGATAGCGTGG TTCAGTTCTTCCACAAGACTAGCGCGGAGATGACGGGCAGCGCGGACACG ATTGGGGCCGGAGCCAAGGTGTTGATGAAGGGGCTCGTTGGTGGAACATT CGGCAGTGCCGCTAAGATAACTGGTGCGTTTGTATGCGAGCGCATCGGTG CTTGTGACCGTGAGACCAGGCGATGTACGTGATTGTTTGACATGTTTGTG ATCAACGCTACGCTTGCCTTTCGGTTCGTATTTGTGTTGTGCTATGCTAT TTTCCGCCCACCCCTCGCACAGTCCACTCTAGGCAGTGTAAGACCAAGCC ACAACAGGGAGATGTATCTATATACGACGTGCACATTACACATTTTGATC GGGGCAATACTATTGATGTTGCATCGTACCAAGCGGAAAATCTCCTGCTG GCTCTTTCTTCTTCTTCGGTACTCCATCGTAATCATGTAATTCATATTGA TAGGTTCTTTGGAGGGCTTGATCCGCGGCTTGAGTGGCACTGCCATTCTG GAGAACGACCTATATCCAGGGGAAACGGGAGACGGCGATGATTACCGAGG CGACCACGGAGAAGTCCACGTCCTGGAGCACGGAATGAAGCAAGGTGGCA AGGTGATATCTGACTATCTATCTCCCAGAGCGAGGAAACGACACTAGGTT GTGTGTTGCCGCTTCACGCTGTTGGTGGCGTGTTGCCGAATGCTATTGTA ATAATGGTATCGTGATTGTGGTTGCTATACACGACACGACAAGTTGTGTG AGACATGTGTATGGAATAGCATTTTATGTACAGCTCTTCCTTGTACTTCT ATCGCCATGTTTGTCGACATTTTGGCGAGCAGTGTTTGATGTGTACTGAC TGGATAGGTGTGCGACGCTGTCAAGTGTACTTGTGCCATGCATTCGGAAA ATGACCGAAATTGTGTATACCATTATATGTTGGCCTGGTGAAGTTTACGC CGCACGGGACATATTCTTCAAAAACGCGTCTGAAAAACTATGTTTTGTTG ATATGGTTTTCAGTCGGCATCCCATATTTATCTAGAGAATCCACAGATCT AATATGCGAGTTGATTGTTGAGAATATTAGCACGCTGCCTGCTTGTGGCG ACCATGACATAACAAAAATAATTTCAAGTCGTTCATATTTGGTGCATTCG ATATACGATACCATGGACAACAACAACAAACAAGGTATTTTATGAGAGCA TGAGAGTGGGGATATCGGGACTTGTGGACCGTCCCATGGAGGGTGCGAAA GATGAGGGCTTCGCAGGGTTTATCGCGGGAATGGCAAAGGGGATCGTCGG AGCGGTGGCGGCGCCGGTTGCTGGGGCGCTGGGCGCCGTCTCGCGTGCCG CCGAAGGCGTCGATGCCTCCACACGGTGAGGATGAAGCGAAACATGCAGG GGGGGGGCCTTGCTCCTGCTTTGACTAATATTGTCATGTATGTAATTTTA GTAAAGTCTTGATTCAATCTACAGGGTCGTCCGTCCTGAAACGACATGAG CCTGCCCTGCTGTCTCTACTGTGGCTATTTTGTTTTATTTTATTTTTTTC TCATTTTGTGCTCTTGCTTTTTTGGTTGATACCTAGGGGCAAAACTATTT GGCAGCTGGGGATTTTGTGCGAGATGGCCACTAGTAAATGGGGCACCTGG TTTGGGCGCCGCGTGTTGGATCACATGCGGGGTTGTTGTTACTAATATTT TTCGAGTGGGCCTCAAACCGCATAGATCGCTTCTATACCGCCCCTCGCTC TCCCTACCTGCCGTGGCTTGACAGTCTTTCAGACGAGAAACGTATGGGAA GACGACGCGCGGCGAGGACCTTCGTAGCATCGTCATATTCCACGGGTCGA GCACTGACCCCTGTAACTCCCACGGACCTAGTAAAGCACGTACCGCGAAA ATTCGCCACTCTTTGGGCGGGAACGGCAAATGGACATCGTGCCGGCGATG GTCAGGGTGGCCACGGGACGGTGGAGTTGGATGAGGAATGCCAGCGGGGA CGGTAAAGAAACGAAGAGGGCGTTGTTAATACGCAAGTTTTTGCCAGTTT TGTTTTTTAGTGGTTCCGTGATACCCCCACACCACCCTCACACCACCCCC ACCCCCACACACCTAGCCCTCGCGGCGGTTCTCCCGTTTCTGTACTGACT ACTGGCGTACGGATTTCTGGTGAAAGATGGTCGGGGAGTGTGAGGATGAA AGAATATGTTTCATCAATAGGAACAACGAAGAGGAAGCCTGGTGACTAAT GGGTTTTTTTGTTGGATGAACGCGTTCCGTGGATCGAGTCAATGTATTTA CAAGGAAGGTTCATTAACATAAAAGTGTGTTCGGCATTCAGTATTATCGA TTGCTGCTTTGTTCTGTGGTGATGTTTGTCTCTGTCGTTGTTGCGTGGGT AATTTTTTTTTTCGGTATCGGTATTATGCTTCATGTTCCTTGTTGGCTGC TGTGCTGTGTGCAATGTGTTGTTCTCGTGGACGAATTCTTTTACGGTGTC CTTTGCTGTATGTAGTACTCGTTGTACAGTACGGGCATGTACTACTTTTA GGACATGAGTGTTTAGTATGGTTGACCCCCACCCAGCGTGGTACATTAGA CCGTGGGCATGGACTTTTCTCCACTTGCAGCAAACTACACGCGTGAACCA AGTAAGTCCGAATTAAAAAAGAAAAAAATATATATTTTTTCCAATAATTA TACAACCGACCTCAAAGATGAAGCAAATTTTTGTGGTACCACGACGATTG ATATTTATATTTATTCTGGGAGTTGCTTGTGGTTCAGGTGGTATGTTCGA GGGAGGCATGAAATAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig6863:518..4634+

>mRNA_H-paniculata_contig6863.14780.1 ID=mRNA_H-paniculata_contig6863.14780.1|Name=mRNA_H-paniculata_contig6863.14780.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1710bp|location=Sequence derived from alignment at H-paniculata_contig6863:518..4634+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCGTAACGCACTACTGTGGTGGCCTCCGGGGGCTGGTCTCACTAGT
GCTGGCGGCCCTGACTCAACAGGCCGTGGCGCAGGGGTACAAGGTCGTGG
GTTCTATGGAGCTGCTCGGAGACCCGCTGTCACTCGTCAGCAAGATGATC
GTAACGCACTACTGTGGTGGCCTCCGGGGGCTGGTCTCACTAGTGCTGGC
GGCCCTGACTCAACAGGCCGTGGCGCAGGGGTACAAGGTCGTGGGTTCTA
TGGAGCTGCTCGGAGACCCGCTGTCACTCGTCAGCAAGCTGGGAGATAGC
GTGGTTCAGTTCTTCCACAAGACTAGCGCGGAGATGACGGGCAGCGCGGA
CACGATTGGGGCCGGAGCCAAGGTGTTGATGAAGGGGCTCGTTGGTGGAA
CATTCGGCAGTGCCGCTAAGATAACTGCTGGGAGATAGCGTGGTTCAGTT
CTTCCACAAGACTAGCGCGGAGATGACGGGCAGCGCGGACACGATTGGGG
CCGGAGCCAAGGTGTTGATGAAGGGGCTCGTTGGTGGAACATTCGGCAGT
GCCGCTAAGATAACTGGTTCTTTGGAGGGCTTGATCCGCGGCTTGAGTGG
CACTGCCATTCTGGAGAACGACCTATATCCAGGGGAAACGGGAGACGGCG
ATGATTACCGAGGCGACCACGGAGAAGTCCACGTCCTGGAGCACGGAATG
AAGCAAGGTGGCAAGGTTCTTTGGAGGGCTTGATCCGCGGCTTGAGTGGC
ACTGCCATTCTGGAGAACGACCTATATCCAGGGGAAACGGGAGACGGCGA
TGATTACCGAGGCGACCACGGAGAAGTCCACGTCCTGGAGCACGGAATGA
AGCAAGGTGGCAAGGTATTTTATGAGAGCATGAGAGTGGGGATATCGGGA
CTTGTGGACCGTCCCATGGAGGGTGCGAAAGATGAGGGCTTCGCAGGGTT
TATCGCGGGAATGGCAAAGGGGATCGTCGGAGCGGTGGCGGCGCCGGTTG
CTGGGGCGCTGGGCGCCGTCTCGCGTGCCGCCGAAGGCGTCGATGCCTCC
ACACGGTATTTTATGAGAGCATGAGAGTGGGGATATCGGGACTTGTGGAC
CGTCCCATGGAGGGTGCGAAAGATGAGGGCTTCGCAGGGTTTATCGCGGG
AATGGCAAAGGGGATCGTCGGAGCGGTGGCGGCGCCGGTTGCTGGGGCGC
TGGGCGCCGTCTCGCGTGCCGCCGAAGGCGTCGATGCCTCCACACGTCTT
TCAGACGAGAAACGTATGGGAAGACGACGCGCGGCGAGGACCTTCGTAGC
ATCGTCATATTCCACGGGTCGAGCACTGACCCCTGTAACTCCCACGGACC
TAGTAAAGCACGTACCGCGAAAATTCGCCACTCTTTGGGCGGGAACGGCA
AATGGACATCGTGCCGGCGATGGTCAGGGTGGCCACGGGACGGTGGAGTT
GGATGAGGAATGCCAGCGGGGACGGTAATCTTTCAGACGAGAAACGTATG
GGAAGACGACGCGCGGCGAGGACCTTCGTAGCATCGTCATATTCCACGGG
TCGAGCACTGACCCCTGTAACTCCCACGGACCTAGTAAAGCACGTACCGC
GAAAATTCGCCACTCTTTGGGCGGGAACGGCAAATGGACATCGTGCCGGC
GATGGTCAGGGTGGCCACGGGACGGTGGAGTTGGATGAGGAATGCCAGCG
GGGACGGTAA
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