mRNA_H-paniculata_contig6863.14781.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6863.14781.1
Unique NamemRNA_H-paniculata_contig6863.14781.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6863.14781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6863contigH-paniculata_contig6863:6069..7050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size341
Cds size339
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930821.078778-CDS-H-paniculata_contig6863:6068..61921622930821.078778-CDS-H-paniculata_contig6863:6068..6192Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6863 6069..6192 +
1691481467.676963-CDS-H-paniculata_contig6863:6068..61921691481467.676963-CDS-H-paniculata_contig6863:6068..6192Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6863 6069..6192 +
1622930821.1044126-CDS-H-paniculata_contig6863:6835..70501622930821.1044126-CDS-H-paniculata_contig6863:6835..7050Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6863 6836..7050 +
1691481467.6878328-CDS-H-paniculata_contig6863:6835..70501691481467.6878328-CDS-H-paniculata_contig6863:6835..7050Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6863 6836..7050 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6863.14781.1prot_H-paniculata_contig6863.14781.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6863 6069..7050 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6863.14781.1

>prot_H-paniculata_contig6863.14781.1 ID=prot_H-paniculata_contig6863.14781.1|Name=mRNA_H-paniculata_contig6863.14781.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
MIHNDHPGNVRAEYFETPGRRQGSSQQESHALTGAEFGVQQNFIFSTLAS
MAQDAASPGIEPFSPASPSLRGVGASPTSEQHHRRGRSLGMASPRRRAPS
GMMGSLNRLNGAG
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mRNA from alignment at H-paniculata_contig6863:6069..7050+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6863.14781.1 ID=mRNA_H-paniculata_contig6863.14781.1|Name=mRNA_H-paniculata_contig6863.14781.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=982bp|location=Sequence derived from alignment at H-paniculata_contig6863:6069..7050+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCCACAACGACCACCCTGGTAATGTACGGGCAGAGTACTTTGAAAC
ACCTGGAAGAAGGCAAGGCAGCAGCCAGCAGGAATCACACGCGCTCACGG
GCGCTGAGTTTGGAGTGCAGCAAAGTGAGGAGTCGATTGCGGCCTATTGC
TGTGTGTCGGTATTCTCGGGAAGAACGGGAAACCGTTACAACACATTTAA
TACGCAGAATTGCGGTCGGGAGTCACAGAGTTCATAATAAGTCAAGAGTG
TGGTTCCGAGTTTGCTGCGTGCAACTCCCATCGCATCGGGCGTGGCACTA
GCCACTCTGAGAACAGGAAATAGGGAAGGTTTGAAGGTGTCGCGCAACGA
GGTTTACGTAGGCAAGGACGGCGCAGCTGGGACATCAGTGGTGGCTTTGG
CCATCCCTCCGTCGTACGTGCGGAGGAAATCTCCAGGAAACCCGAGCAAA
ATAATATATCCAATTTCCCAAGTGCTTAAGGTGTGCGTGTACGTTTTCCT
TGAGGGAAAACCCCAAAACAAACAATTGCAACGAGTTTGACTCCGCCTCT
GCTGCGGTGTTCCACGCTGCGGCTTTTGCGTATCTTTTTATGGCGGGCCA
CACTGTTGCAACCCTCCGGGTACGCCCACGACAGGGGCAAACCCAACGCA
CTCCCGTTCCCAACTAGAATTCCGAAAACTTTCTTCTTTGGTCGTGTGTA
CTTTGGTCGTGTGTGCTTTCTGTGGTGTGTGCCTGTCTACTGTCTTTCCC
CCCTGGTTGGTTTTCAGATTTCATCTTCTCAACCCTCGCATCCATGGCGC
AGGACGCGGCCTCGCCAGGTATCGAGCCATTTTCTCCGGCTTCACCTTCG
CTGAGGGGTGTTGGTGCGTCACCCACCAGTGAGCAGCACCACAGGCGAGG
AAGGTCGTTGGGGATGGCGTCGCCGAGGCGACGAGCACCTAGCGGTATGA
TGGGTTCCCTCAACCGTTTGAACGGTGCGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig6863:6069..7050+

>mRNA_H-paniculata_contig6863.14781.1 ID=mRNA_H-paniculata_contig6863.14781.1|Name=mRNA_H-paniculata_contig6863.14781.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig6863:6069..7050+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCCACAACGACCACCCTGGTAATGTACGGGCAGAGTACTTTGAAAC
ACCTGGAAGAAGGCAAGGCAGCAGCCAGCAGGAATCACACGCGCTCACGG
GCGCTGAGTTTGGAGTGCAGCAAAATGATCCACAACGACCACCCTGGTAA
TGTACGGGCAGAGTACTTTGAAACACCTGGAAGAAGGCAAGGCAGCAGCC
AGCAGGAATCACACGCGCTCACGGGCGCTGAGTTTGGAGTGCAGCAAAAT
TTCATCTTCTCAACCCTCGCATCCATGGCGCAGGACGCGGCCTCGCCAGG
TATCGAGCCATTTTCTCCGGCTTCACCTTCGCTGAGGGGTGTTGGTGCGT
CACCCACCAGTGAGCAGCACCACAGGCGAGGAAGGTCGTTGGGGATGGCG
TCGCCGAGGCGACGAGCACCTAGCGGTATGATGGGTTCCCTCAACCGTTT
GAACGGTGCGGGGATTTCATCTTCTCAACCCTCGCATCCATGGCGCAGGA
CGCGGCCTCGCCAGGTATCGAGCCATTTTCTCCGGCTTCACCTTCGCTGA
GGGGTGTTGGTGCGTCACCCACCAGTGAGCAGCACCACAGGCGAGGAAGG
TCGTTGGGGATGGCGTCGCCGAGGCGACGAGCACCTAGCGGTATGATGGG
TTCCCTCAACCGTTTGAACGGTGCGGGG
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