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Homology
BLAST of mRNA_H-paniculata_contig6688.14579.1 vs. uniprot
Match: A0A6H5J7V5_9PHAE (VHS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J7V5_9PHAE) HSP 1 Score: 159 bits (401), Expect = 2.250e-41 Identity = 96/189 (50.79%), Postives = 126/189 (66.67%), Query Frame = 1
Query: 1 VSDKEILATTASCTEMLDQVLKAAESREEVGESDITSEIVDQLKGVAPKLTGIIEAHGEGDPVMIEGLFKAMEAADDVLRLYKDVVAGVTAVPILPPSRFSGNMGSLTGEMATMTMEQAAAAKGAAAKLRAKTKTVPTLARPPGHTKNASASSPFSDKNANNKNKPASEPSSTVDLLSGFELEGTRLSN 567
VSD+EI+AT ASC+EML+QVL+AAESR EV +SDIT+E+V+QLK PK++GIIEA+GEGD M+E LFK +A D LRLY+DVV GV +VP+LPPS +S N+G+++G M +++ Q A A+ AA+KL+ KT VPTL+ TVDLLSGFEL+G SN
Sbjct: 244 VSDREIVATGASCSEMLEQVLQAAESRAEVRDSDITAEVVEQLKQTGPKISGIIEANGEGDAAMLEALFKVNDAVDSTLRLYQDVVDGVKSVPLLPPSSYSSNIGAISGRMEGLSIGQVAGARAAASKLK-KTAAVPTLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-TVDLLSGFELDGASNSN 430
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 144.1 |
| Seed ortholog evalue | 8.6e-32 |
| Seed eggNOG ortholog | 2880.D7FWE4 |
| Preferred name | GGA2 |
| KEGG ko | ko:K12346,ko:K12404,ko:K20524 |
| KEGG TC | 2.A.55.1 |
| KEGG Pathway | ko04142,map04142 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005829,GO:0005856,GO:0005938,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006896,GO:0006897,GO:0006996,GO:0007010,GO:0007015,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009057,GO:0009987,GO:0012505,GO:0015031,GO:0015629,GO:0015833,GO:0016043,GO:0016192,GO:0016197,GO:0016482,GO:0019538,GO:0019941,GO:0030029,GO:0030036,GO:0030163,GO:0030479,GO:0030863,GO:0030864,GO:0031984,GO:0032182,GO:0032509,GO:0032511,GO:0033036,GO:0033365,GO:0034613,GO:0035091,GO:0042886,GO:0043130,GO:0043162,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043328,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051603,GO:0051641,GO:0051649,GO:0061645,GO:0070273,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0097435,GO:0098657,GO:0098791,GO:0099568,GO:1901564,GO:1901565,GO:1901575,GO:1901981 |
| EggNOG free text desc. | intracellular protein transport |
| EggNOG OGs | KOG1087@1,KOG1087@2759 |
| COG Functional cat. | L |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko02000,ko04131 |
| Exons | 4 |
| Model size | 710 |
| Cds size | 708 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6688.14579.1 >prot_H-paniculata_contig6688.14579.1 ID=prot_H-paniculata_contig6688.14579.1|Name=mRNA_H-paniculata_contig6688.14579.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=236bp
VSDKEILATTASCTEMLDQVLKAAESREEVGESDITSEIVDQLKGVAPKL
TGIIEAHGEGDPVMIEGLFKAMEAADDVLRLYKDVVAGVTAVPILPPSRF
SGNMGSLTGEMATMTMEQAAAAKGAAAKLRAKTKTVPTLARPPGHTKNAS
ASSPFSDKNANNKNKPASEPSSTVDLLSGFELEGTRLSNRGSTTDKGGGG
AAGASGSSSVGDLFAGFVAPGGGAVGTGAGCVDAKQ back to topmRNA from alignment at H-paniculata_contig6688:7567..11561- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig6688.14579.1 ID=mRNA_H-paniculata_contig6688.14579.1|Name=mRNA_H-paniculata_contig6688.14579.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3995bp|location=Sequence derived from alignment at H-paniculata_contig6688:7567..11561- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTCGGACAAGGAGATCTTGGCGACAACGGCCTCGTGCACGGAGATGCT
TGACCAGGTTTTGAAAGCGGCGGAATCACGTGAAGAGGTGCGCAATCGCG
AGTGTGTATACACTGGCAAACATATCTTGAGCGATAGCGAACGGTTGATG
CTTTTTACCAACATTTGTTTGTTCTTGGTGTTATTATCCAGAGCGTCGTC
TGGTGTATGTATGTAAAACGGCCATCTTTATGTTTGTTTCGTTTCCTGTA
AATGGCGTTCGTTGTTGTATCTTGAAACATGTCGCACCGCAAGAAGACGA
GGATCGTGTCACAAGAATTTCTTCACGATTAGGGTAGTAAATATAGACTA
CCAAAACAAAAGTTTGAGCCAATGTTCCCGTTGTTGACTGTTTTTTTATT
CTGGTTTATTTGAAAGGTAGCCTGTTCCATGAGTAGGTGTGCCAAAGAAG
CGGTTGTGGGCAATTTCCACAACGTGCGTGATTTTTTATTTTTTATTTTT
TATGTTTTATGTTTTATAACGTGTCCCTTGATTGAAGCACCTTGTTTTTT
GGCGTCTGTTTTCACTTCTACACATGCGTTTTGCTTGAGCAGCTGCTCTA
TTTCCATTTTTTTTTCTTTCTTATTTTGGTTCCAGTGGAGCACGTGGTGT
TTTGCGGTTTTTGGTGTTTGATTTCATGCGATATCTTGAGAGCCCTCCAT
CTCTTTGTAGGTACGCCAAAAGACGATATCGTGCGTCGTTGACGATGTTG
GGGCTGGGTATTACTTCGAAACGCCATGTAATCTTCACTAAAAAACACGA
TGGATAATAACGAAACGGACGGAGGGTCATATGGACATGAAAACCTATAA
CTATCTCTGAGAAAAGCTGCCTGCTGACTGCCGGAATTGAACGTCGAATT
CAACATCCAGTGAGACTGATATGTCAGCATGGGAACCAGAAGAAAGAGCT
ACGAGATGCCGTGCTTTGTTCGAGAACGCGTGAACTGTTTTGCACTGTGA
AGAGAAGCAGCCGGCATCAAAACTGATGTCGCCAGCACAGGTTTTCCTTC
GTGTATAATAGCCCCATAGTCAAATCGGGCAGCTTTTGCAGGTATTCCCC
GCAGGCGCCCCGAAGCCTGCACGCCACCTTACCGAGTGTACACATGTATG
GGTAATGACCTCCATTCCTAATTTCTACGAAAAAAGGCGCGGTGAAACTC
CTGTCAAATTGTTTTTTTGTTGTTGATTTCTTTACACTAGATCTGTATTT
TTCCAAGTCCCGTTGGTTACCCCGCAGAAAACCCTGTCTGCAGCACAGAT
TTTTTTCGCAGATTTATGGCGCTTTAGTCCCCAAAGGGTTGACAGGAATA
TTTAACATTTACCTCTACGTTTTCGTGTTTAGGAGTGTGGACATTTGCTC
TATTTACCTCTAGAATATAGAGAAATTAACGCATCTATTTTCACTAGTTT
TCCTTGAGATGAATTCTGTAACGCGTACTATACTTTACCGTTATTCATTT
CATCAAGTTACTATCCAACACTTTAGCTCTGTCATGATCATGCAGACCCG
CTATCAGACGATAGAAGTCTCCCGTGGCACACTAGTAGGTACATATATCA
AAACACGTTACACACCATTCGTAAGGCAGCAGGCACGTTCCGCAGACTGT
TGTTCGTTTCCGCGGCCACTGACTGCTGGTCTGAGGAATCCATATTTGAC
AATCTGCCTCGCGAGGTGAAAAATATGATATATGCAGCAAAAACACGTTT
GAAACCCCGAGAAACGGGAGGGCGATGGGCTAGGCACTAGGATCCAGAAC
TGAGAGACAGGTACGAATCTCTTATTTGCGTTATTAGTTTTTATTTTTCG
ATTTAATTTTCCTTCAATTTTTTGTTATTCTATCTTTATTTCCACTTAAA
AAATCTATATTATATTAGGTACGAGCCCCGCCCCCCCGTCCCCACCTCGT
CATGCTGGTGATACCATCCCATCACACACAGGTGGGAGAATCTGACATCA
CGAGCGAAATAGTGGACCAGCTCAAGGGAGTCGCCCCGAAGCTCACTGGT
ATCATCGAGGCGCACGGGGAGGGCGATCCGGTGATGATAGAGGGTCTGTT
TAAGGCCATGGAAGCGGCCGACGACGTTCTTCGGCTGTACAAGGATGTCG
TGGCTGGCGTCACTGCGGTGCCCATACTTCCTCCCTCTAGGTACGTTTGA
TTGGCCTGAGAAGGTAAGGGTTTTGAGGTAAATGGGGTGGGTAAATCATT
TTTGAGCCACACTTGGCAACAGCTCAGGAAAGAGCGATTGGCCGTCGGAA
AGTCGCTCTGATATCCCGAGGAAAACATGACGTGGTCACTGGTCTAAGAA
GTATGTTATACAGCATGCAAAACACAAGTACGATAGACCCCCTGTCCGTC
TCTTCATCCTCCACTCTATTCCCTCTTTAGGGTCGGAAAGGATCGTAAAT
GAGATGCATGCAGGCTTCGGGTTTTTTTTTGGAGGAGGAGGAGGAGGAGT
ATAACTTTGGTGCTTGGTACCTTGTTGAGTCGAGTCACGCTGGTGGGCGC
GTATTGTGATTGTCACTCTGACGGTGACGTGAATTTGATATTTGAGGTAC
TTTTAAGGCCCACTTGGGGTCAAGGGCTCAACTTTTTGTAGCTGCCGCAG
CGGGACTAGGATAGCCCACGGATGATGGCCATCTAATTCATGTAGCCCCC
CGTCGTTGCGTTTTGTCTTGTCCACACAACTGCAATATTGGTGCTTTGCA
GATTTTCTGGCAATATGGGCTCTTTAACGGGAGAGATGGCAACCATGACG
ATGGAGCAAGCTGCGGCAGCGAAGTGAGTTTATTGCTATTGCGATCGCAG
GGTATTAGCAGTCGTTCGTGTTTGTTTGTGGTACCGATGAGATGAGTGTC
TGAGTGTAGCTAGGGGGACCTAGACACGAGAATGTGGTTGGAGGCAAGTT
GTTGTTGTTGTTGTTGTTTGGTGGTGGTGATGGTGATGGTGATGGTGATG
GTATGGCCGTTGGCACTGTTGCTGATGCTGTTTTCTCACATAGGGCTGGC
TCCACTCGGTTTGTTCGAACCGACTGCCCAATTCTCACACGCCAAGAACC
CTTGAAATCAAGCTACGTACAAGAATCCAAACATAGATACCAGCAGACAA
GCCACTACCATAGCAATATTGAAATCACGCACGGTTCTCATCACGTTTTA
TGAAAGAAAATGGTTACGTTTTTCAGCCCAACAATACCTACCATCCCTCC
CGCCGACCCCATACCCATGTTCTTATCCCTCCTTTGTACATGCATCGATT
CAAATGGACCAGATGAATATGTGGCCTCACCATGAAACACTATGTAATAT
AAAGGTGATTGTAGCTTACCCCCCCCCCCCCTCCCCGCGCGCGCTGCGCG
CCGTTCTCCTAGTTTATTCAGTTCATGGATACGTAATTTCATGCTTTTTA
TACTAATAATAGTACAGTATTTTTTTTGTATTGACAATCATACAGTATTT
TTTTAATACTAATGTTAGTATAATATTTTATGCATAGTTTATGTGCTTGT
ACTTTTGACTCGCTCTTGACTCTACAGTACAGTCCCCATTCCCCCTCCCC
GTGCCCCTCCGTGACAATACGCACACCACCCACACCATCCCACCATCTCA
CAAAGAGGAGCAGCCGCAAAGCTACGGGCGAAAACCAAGACCGTCCCCAC
CCTTGCCCGTCCACCCGGACACACCAAGAACGCATCGGCGTCGTCGCCAT
TTTCAGACAAGAACGCCAACAACAAAAACAAACCCGCCAGTGAACCGTCA
AGTACCGTCGATTTGCTGAGCGGGTTCGAGCTCGAAGGTACGCGTCTGAG
CAACCGCGGCAGCACAACGGACAAGGGCGGCGGTGGGGCTGCGGGTGCAA
GCGGATCTTCATCGGTGGGGGATTTGTTTGCAGGGTTTGTTGCGCCTGGC
GGTGGAGCGGTCGGGACGGGGGCGGGGTGTGTGGATGCCAAGCAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig6688:7567..11561- >mRNA_H-paniculata_contig6688.14579.1 ID=mRNA_H-paniculata_contig6688.14579.1|Name=mRNA_H-paniculata_contig6688.14579.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1416bp|location=Sequence derived from alignment at H-paniculata_contig6688:7567..11561- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTCGGACAAGGAGATCTTGGCGACAACGGCCTCGTGCACGGAGATGCT
TGACCAGGTTTTGAAAGCGGCGGAATCACGTGAAGAGGTGTCGGACAAGG
AGATCTTGGCGACAACGGCCTCGTGCACGGAGATGCTTGACCAGGTTTTG
AAAGCGGCGGAATCACGTGAAGAGGTGGGAGAATCTGACATCACGAGCGA
AATAGTGGACCAGCTCAAGGGAGTCGCCCCGAAGCTCACTGGTATCATCG
AGGCGCACGGGGAGGGCGATCCGGTGATGATAGAGGGTCTGTTTAAGGCC
ATGGAAGCGGCCGACGACGTTCTTCGGCTGTACAAGGATGTCGTGGCTGG
CGTCACTGCGGTGCCCATACTTCCTCCCTCTAGGTGGGAGAATCTGACAT
CACGAGCGAAATAGTGGACCAGCTCAAGGGAGTCGCCCCGAAGCTCACTG
GTATCATCGAGGCGCACGGGGAGGGCGATCCGGTGATGATAGAGGGTCTG
TTTAAGGCCATGGAAGCGGCCGACGACGTTCTTCGGCTGTACAAGGATGT
CGTGGCTGGCGTCACTGCGGTGCCCATACTTCCTCCCTCTAGATTTTCTG
GCAATATGGGCTCTTTAACGGGAGAGATGGCAACCATGACGATGGAGCAA
GCTGCGGCAGCGAAATTTTCTGGCAATATGGGCTCTTTAACGGGAGAGAT
GGCAACCATGACGATGGAGCAAGCTGCGGCAGCGAAAGGAGCAGCCGCAA
AGCTACGGGCGAAAACCAAGACCGTCCCCACCCTTGCCCGTCCACCCGGA
CACACCAAGAACGCATCGGCGTCGTCGCCATTTTCAGACAAGAACGCCAA
CAACAAAAACAAACCCGCCAGTGAACCGTCAAGTACCGTCGATTTGCTGA
GCGGGTTCGAGCTCGAAGGTACGCGTCTGAGCAACCGCGGCAGCACAACG
GACAAGGGCGGCGGTGGGGCTGCGGGTGCAAGCGGATCTTCATCGGTGGG
GGATTTGTTTGCAGGGTTTGTTGCGCCTGGCGGTGGAGCGGTCGGGACGG
GGGCGGGGTGTGTGGATGCCAAGCAGAGGAGCAGCCGCAAAGCTACGGGC
GAAAACCAAGACCGTCCCCACCCTTGCCCGTCCACCCGGACACACCAAGA
ACGCATCGGCGTCGTCGCCATTTTCAGACAAGAACGCCAACAACAAAAAC
AAACCCGCCAGTGAACCGTCAAGTACCGTCGATTTGCTGAGCGGGTTCGA
GCTCGAAGGTACGCGTCTGAGCAACCGCGGCAGCACAACGGACAAGGGCG
GCGGTGGGGCTGCGGGTGCAAGCGGATCTTCATCGGTGGGGGATTTGTTT
GCAGGGTTTGTTGCGCCTGGCGGTGGAGCGGTCGGGACGGGGGCGGGGTG
TGTGGATGCCAAGCAG back to top
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