mRNA_H-paniculata_contig66864.14577.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig66864.14577.1
Unique NamemRNA_H-paniculata_contig66864.14577.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig66864.14577.1 vs. uniprot
Match: A0A6H5KQ76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ76_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.000e-11
Identity = 35/76 (46.05%), Postives = 44/76 (57.89%), Query Frame = 1 
Query:    1 KYHIWDTVNTNLKDVEA----YAPTVP----------GVYTWPLPGAEGYYSKLLSGPLPPLQCTDYAPAGTKYEG 186
            +YHIWD++NT   D +     YAP +P            +TWPL GAEGYYS + SGP PPL+C +  PAG  Y G
Sbjct:  117 QYHIWDSLNTPFFDEDNPPSDYAP-IPTKFNDGIDEGDTFTWPLEGAEGYYSVMYSGPFPPLECPNLYPAGVAYVG 191
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BLAST of mRNA_H-paniculata_contig66864.14577.1 vs. uniprot
Match: D7FMV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV1_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 3.130e-10
Identity = 34/76 (44.74%), Postives = 42/76 (55.26%), Query Frame = 1 
Query:    1 KYHIWDTVNTNLKDVEA----YAPTVPGVY----------TWPLPGAEGYYSKLLSGPLPPLQCTDYAPAGTKYEG 186
            +YHIWD++NT   D +     YAP +P  Y          TWPL GAEGYYS + SGP PPL+C +  P    Y G
Sbjct:  147 QYHIWDSLNTPFFDEDDPPSDYAP-IPTKYNDGIEEGDTFTWPLEGAEGYYSVMYSGPFPPLECPNLFPEDVAYVG 221
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig66864.14577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQ76_9PHAE1.000e-1146.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMV1_ECTSI3.130e-1044.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig66864contigH-paniculata_contig66864:134..322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930791.3297923-CDS-H-paniculata_contig66864:133..3221622930791.3297923-CDS-H-paniculata_contig66864:133..322Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig66864 134..322 +
1691481453.8938942-CDS-H-paniculata_contig66864:133..3221691481453.8938942-CDS-H-paniculata_contig66864:133..322Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig66864 134..322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig66864.14577.1prot_H-paniculata_contig66864.14577.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig66864 134..322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig66864.14577.1

>prot_H-paniculata_contig66864.14577.1 ID=prot_H-paniculata_contig66864.14577.1|Name=mRNA_H-paniculata_contig66864.14577.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
KYHIWDTVNTNLKDVEAYAPTVPGVYTWPLPGAEGYYSKLLSGPLPPLQC
TDYAPAGTKYEG*
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mRNA from alignment at H-paniculata_contig66864:134..322+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig66864.14577.1 ID=mRNA_H-paniculata_contig66864.14577.1|Name=mRNA_H-paniculata_contig66864.14577.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=189bp|location=Sequence derived from alignment at H-paniculata_contig66864:134..322+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGTACCACATCTGGGACACAGTAAACACGAACCTAAAAGATGTAGAGGC
ATACGCGCCCACTGTCCCCGGAGTTTACACGTGGCCCCTTCCTGGCGCTG
AGGGATACTACAGCAAGCTTTTGTCTGGCCCGTTGCCTCCTCTTCAGTGC
ACCGACTACGCACCGGCCGGCACCAAATATGAGGGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig66864:134..322+

>mRNA_H-paniculata_contig66864.14577.1 ID=mRNA_H-paniculata_contig66864.14577.1|Name=mRNA_H-paniculata_contig66864.14577.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig66864:134..322+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGTACCACATCTGGGACACAGTAAACACGAACCTAAAAGATGTAGAGGC
ATACGCGCCCACTGTCCCCGGAGTTTACACGTGGCCCCTTCCTGGCGCTG
AGGGATACTACAGCAAGCTTTTGTCTGGCCCGTTGCCTCCTCTTCAGTGC
ACCGACTACGCACCGGCCGGCACCAAATATGAGGGGTAGAAGTACCACAT
CTGGGACACAGTAAACACGAACCTAAAAGATGTAGAGGCATACGCGCCCA
CTGTCCCCGGAGTTTACACGTGGCCCCTTCCTGGCGCTGAGGGATACTAC
AGCAAGCTTTTGTCTGGCCCGTTGCCTCCTCTTCAGTGCACCGACTACGC
ACCGGCCGGCACCAAATATGAGGGGTAG
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