mRNA_H-paniculata_contig6686.14576.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6686.14576.1
Unique NamemRNA_H-paniculata_contig6686.14576.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6686.14576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6686contigH-paniculata_contig6686:9209..11462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1281
Cds size1281
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930791.0558329-CDS-H-paniculata_contig6686:9208..92871622930791.0558329-CDS-H-paniculata_contig6686:9208..9287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6686 9209..9287 +
1691481453.8031077-CDS-H-paniculata_contig6686:9208..92871691481453.8031077-CDS-H-paniculata_contig6686:9208..9287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6686 9209..9287 +
1622930791.0784018-CDS-H-paniculata_contig6686:10260..114621622930791.0784018-CDS-H-paniculata_contig6686:10260..11462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6686 10261..11462 +
1691481453.811911-CDS-H-paniculata_contig6686:10260..114621691481453.811911-CDS-H-paniculata_contig6686:10260..11462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6686 10261..11462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6686.14576.1prot_H-paniculata_contig6686.14576.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6686 9209..11462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6686.14576.1

>prot_H-paniculata_contig6686.14576.1 ID=prot_H-paniculata_contig6686.14576.1|Name=mRNA_H-paniculata_contig6686.14576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=427bp
GEKGGGGGGKKGGAATKGGIGSFFGIAATIKSEPSTLSRDAKADVAVDLA
SDEYDVNDGSTNNGHDRAGSSSGGSINKSNGKVAKTTTTTKVKGTSSTNK
KNTIKTDPDGDDEGEKISFNNAGKDGRGDVCAGAGGGKREVGKERDGSNG
KGHDDGGDDDDDDDPSSVAKQRKRKSSKSKAVIDDHDSEDGEDRGDGDEG
EGSRKKQKSIFKVDEDNPEARKNSSIDQRGKDSATANGKRVTNGKTADKN
TGGHGDNEDEEEEEWSDGDDSGSGGRGVAGKKPQTAFSATASASAAAKKS
CSMKKMNPRSPSGAAAATSLCTSADGRRGDSGEVDGDDDEDGYAENTPAA
KKTKRAGGAGGDCDSKSKKSPGARGGSPVARSSSRKRKLPGKGKKVVGGT
GSGVGEEESGGDEDGEGKEGEELGEKK
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mRNA from alignment at H-paniculata_contig6686:9209..11462+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6686.14576.1 ID=mRNA_H-paniculata_contig6686.14576.1|Name=mRNA_H-paniculata_contig6686.14576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2254bp|location=Sequence derived from alignment at H-paniculata_contig6686:9209..11462+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGAAAAGGGAGGAGGCGGGGGGGGTAAGAAGGGAGGAGCGGCGACTAA
GGGAGGCATCGGATCCTTCTTCGGCATAGGTGCGTGTGTGCGTGTGTGCG
TGTGTCATTCTCCAAGTGTACCTCCCTGTGATTTTGCGTGTGTAGTCGTG
CTCGGTGTGGGTGGTGTTGGGGTGTTGGCTTTGCTTGGCTGCCTTTGGAT
TTTTTCTAGCTCGTAGGGTTTTTTTCGTGTAGAGGTAAAGCTCTAACAGT
ATTACGTTGTTTTTTCATCCTGCTTTGGTTTGTTAAGGTTCAGGTGCGTC
ACTCTTTTGCGTTTTTTGTATCGGCAAAAATGTGCGTGCGTTTTGCCGAT
TTCGCTTGTCATGCATTCTTCGATTTTGGAAGTTTGTGACTCGAGCGGAT
ACTTGACTGCCGTTGCCGCAGATTTTTTCATTTTCGTTTATTGGTGTCTC
GAGCAGCCGCAGCTTGGACCTGCAAACCCGTTCAGCTTTATGTTATTACC
TTTATACTCGGGAGAAGAAGCCTCGGCGCTCCTCCGATTATAAATCCGTA
GCACGTGCTCTCATCTTCTCCGTGCCCCGATTCAACGTGGACATTAACCT
AGAGTGCCTGTTTGTCGTGCTCCTGTTCGTGTAAAGGCTGGACCCAGTCT
CGAGCAGCTCCGCGGTGATATTTTAGTTGCGCGACCGCATGCCCAGACGG
CACATTTACGGGCAAGCCACAGCACTGCCGTGGCGATATACATGCTACAT
ACGAAGCGCGTACCTCGGTGCGAGAACGAATAACACACTCCGCGATGCAT
CCCTTTGAGTAGCTCAAAACCCACCAGCGCTCTCTACACCCCAGTCATCT
GTTTTTGATCCATCTGTGTCCTTCCTCTATGCTCTTGTCTCATTTTTTTC
TCTTCTTTTCGTCGTGATTCGATTCCTCTCCTTTTTTTTGTGTATGTTTT
GCTTTGGACTTCGACGCGACTGCGTATGCACGCGCTGGGCTCGTGAATCT
CAACAACATTAACACCAACACCAACCCTAATACCACCACCGCCACCATAC
AGCGGCCACTATAAAGAGCGAGCCAAGCACACTCAGTCGTGATGCAAAGG
CGGACGTTGCCGTGGACCTCGCAAGCGACGAATACGACGTCAACGACGGC
AGCACTAATAATGGCCACGATCGGGCGGGTAGCAGTAGCGGTGGTAGCAT
TAACAAGAGCAACGGGAAGGTAGCAAAGACGACAACGACAACAAAAGTGA
AGGGTACTAGCTCAACAAACAAGAAGAATACAATAAAAACAGACCCTGAT
GGTGATGATGAAGGCGAGAAAATATCTTTCAACAATGCAGGCAAAGACGG
AAGAGGTGATGTTTGTGCTGGTGCCGGTGGCGGAAAGCGGGAAGTAGGCA
AGGAGCGAGATGGGTCCAATGGTAAAGGTCATGATGATGGTGGCGACGAC
GACGACGACGATGATCCTTCGTCCGTGGCGAAACAGAGGAAAAGAAAGTC
CAGCAAGTCGAAGGCGGTGATAGACGACCACGACTCGGAGGACGGGGAAG
ACAGAGGGGATGGAGACGAGGGCGAGGGCTCCCGAAAGAAGCAGAAGAGC
ATCTTTAAAGTCGATGAAGACAACCCAGAAGCTAGGAAAAACAGTTCAAT
AGACCAGAGGGGGAAGGATAGTGCAACCGCAAACGGTAAGAGGGTCACAA
ACGGTAAAACCGCGGATAAAAATACCGGCGGCCATGGCGACAACGAAGAC
GAAGAGGAGGAAGAATGGAGCGATGGGGATGACAGCGGCAGCGGCGGCCG
TGGCGTCGCCGGGAAGAAACCCCAAACCGCTTTTTCGGCCACCGCCTCCG
CCTCCGCCGCTGCAAAAAAGTCTTGCTCGATGAAAAAGATGAATCCAAGG
TCGCCGTCGGGGGCGGCCGCTGCAACTTCGCTGTGCACTTCGGCAGACGG
CCGGCGCGGTGACAGTGGTGAAGTCGACGGCGACGACGATGAGGACGGCT
ATGCGGAGAACACCCCGGCGGCCAAAAAGACCAAACGCGCCGGTGGCGCG
GGTGGTGACTGTGATTCCAAGAGTAAGAAGTCCCCCGGTGCTCGAGGTGG
ATCACCCGTCGCCCGGTCATCATCACGGAAGAGGAAACTCCCGGGCAAAG
GTAAGAAGGTCGTAGGGGGAACCGGTAGTGGTGTTGGCGAGGAAGAGAGC
GGTGGTGATGAGGACGGGGAGGGGAAAGAGGGGGAAGAGCTAGGAGAGAA
GAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig6686:9209..11462+

>mRNA_H-paniculata_contig6686.14576.1 ID=mRNA_H-paniculata_contig6686.14576.1|Name=mRNA_H-paniculata_contig6686.14576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2562bp|location=Sequence derived from alignment at H-paniculata_contig6686:9209..11462+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGAAAAGGGAGGAGGCGGGGGGGGTAAGAAGGGAGGAGCGGCGACTAA
GGGAGGCATCGGATCCTTCTTCGGCATAGGGTGAAAAGGGAGGAGGCGGG
GGGGGTAAGAAGGGAGGAGCGGCGACTAAGGGAGGCATCGGATCCTTCTT
CGGCATAGCGGCCACTATAAAGAGCGAGCCAAGCACACTCAGTCGTGATG
CAAAGGCGGACGTTGCCGTGGACCTCGCAAGCGACGAATACGACGTCAAC
GACGGCAGCACTAATAATGGCCACGATCGGGCGGGTAGCAGTAGCGGTGG
TAGCATTAACAAGAGCAACGGGAAGGTAGCAAAGACGACAACGACAACAA
AAGTGAAGGGTACTAGCTCAACAAACAAGAAGAATACAATAAAAACAGAC
CCTGATGGTGATGATGAAGGCGAGAAAATATCTTTCAACAATGCAGGCAA
AGACGGAAGAGGTGATGTTTGTGCTGGTGCCGGTGGCGGAAAGCGGGAAG
TAGGCAAGGAGCGAGATGGGTCCAATGGTAAAGGTCATGATGATGGTGGC
GACGACGACGACGACGATGATCCTTCGTCCGTGGCGAAACAGAGGAAAAG
AAAGTCCAGCAAGTCGAAGGCGGTGATAGACGACCACGACTCGGAGGACG
GGGAAGACAGAGGGGATGGAGACGAGGGCGAGGGCTCCCGAAAGAAGCAG
AAGAGCATCTTTAAAGTCGATGAAGACAACCCAGAAGCTAGGAAAAACAG
TTCAATAGACCAGAGGGGGAAGGATAGTGCAACCGCAAACGGTAAGAGGG
TCACAAACGGTAAAACCGCGGATAAAAATACCGGCGGCCATGGCGACAAC
GAAGACGAAGAGGAGGAAGAATGGAGCGATGGGGATGACAGCGGCAGCGG
CGGCCGTGGCGTCGCCGGGAAGAAACCCCAAACCGCTTTTTCGGCCACCG
CCTCCGCCTCCGCCGCTGCAAAAAAGTCTTGCTCGATGAAAAAGATGAAT
CCAAGGTCGCCGTCGGGGGCGGCCGCTGCAACTTCGCTGTGCACTTCGGC
AGACGGCCGGCGCGGTGACAGTGGTGAAGTCGACGGCGACGACGATGAGG
ACGGCTATGCGGAGAACACCCCGGCGGCCAAAAAGACCAAACGCGCCGGT
GGCGCGGGTGGTGACTGTGATTCCAAGAGTAAGAAGTCCCCCGGTGCTCG
AGGTGGATCACCCGTCGCCCGGTCATCATCACGGAAGAGGAAACTCCCGG
GCAAAGGTAAGAAGGTCGTAGGGGGAACCGGTAGTGGTGTTGGCGAGGAA
GAGAGCGGTGGTGATGAGGACGGGGAGGGGAAAGAGGGGGAAGAGCTAGG
AGAGAAGAAGCGGCCACTATAAAGAGCGAGCCAAGCACACTCAGTCGTGA
TGCAAAGGCGGACGTTGCCGTGGACCTCGCAAGCGACGAATACGACGTCA
ACGACGGCAGCACTAATAATGGCCACGATCGGGCGGGTAGCAGTAGCGGT
GGTAGCATTAACAAGAGCAACGGGAAGGTAGCAAAGACGACAACGACAAC
AAAAGTGAAGGGTACTAGCTCAACAAACAAGAAGAATACAATAAAAACAG
ACCCTGATGGTGATGATGAAGGCGAGAAAATATCTTTCAACAATGCAGGC
AAAGACGGAAGAGGTGATGTTTGTGCTGGTGCCGGTGGCGGAAAGCGGGA
AGTAGGCAAGGAGCGAGATGGGTCCAATGGTAAAGGTCATGATGATGGTG
GCGACGACGACGACGACGATGATCCTTCGTCCGTGGCGAAACAGAGGAAA
AGAAAGTCCAGCAAGTCGAAGGCGGTGATAGACGACCACGACTCGGAGGA
CGGGGAAGACAGAGGGGATGGAGACGAGGGCGAGGGCTCCCGAAAGAAGC
AGAAGAGCATCTTTAAAGTCGATGAAGACAACCCAGAAGCTAGGAAAAAC
AGTTCAATAGACCAGAGGGGGAAGGATAGTGCAACCGCAAACGGTAAGAG
GGTCACAAACGGTAAAACCGCGGATAAAAATACCGGCGGCCATGGCGACA
ACGAAGACGAAGAGGAGGAAGAATGGAGCGATGGGGATGACAGCGGCAGC
GGCGGCCGTGGCGTCGCCGGGAAGAAACCCCAAACCGCTTTTTCGGCCAC
CGCCTCCGCCTCCGCCGCTGCAAAAAAGTCTTGCTCGATGAAAAAGATGA
ATCCAAGGTCGCCGTCGGGGGCGGCCGCTGCAACTTCGCTGTGCACTTCG
GCAGACGGCCGGCGCGGTGACAGTGGTGAAGTCGACGGCGACGACGATGA
GGACGGCTATGCGGAGAACACCCCGGCGGCCAAAAAGACCAAACGCGCCG
GTGGCGCGGGTGGTGACTGTGATTCCAAGAGTAAGAAGTCCCCCGGTGCT
CGAGGTGGATCACCCGTCGCCCGGTCATCATCACGGAAGAGGAAACTCCC
GGGCAAAGGTAAGAAGGTCGTAGGGGGAACCGGTAGTGGTGTTGGCGAGG
AAGAGAGCGGTGGTGATGAGGACGGGGAGGGGAAAGAGGGGGAAGAGCTA
GGAGAGAAGAAG
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