mRNA_H-paniculata_contig6682.14570.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6682.14570.1
Unique NamemRNA_H-paniculata_contig6682.14570.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6682.14570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6682contigH-paniculata_contig6682:8738..10838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size449
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6682.14570.1prot_H-paniculata_contig6682.14570.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6682 8837..10746 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930790.2962303-UTR-H-paniculata_contig6682:8737..88361622930790.2962303-UTR-H-paniculata_contig6682:8737..8836Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6682 8738..8836 -
1691481453.4126034-UTR-H-paniculata_contig6682:8737..88361691481453.4126034-UTR-H-paniculata_contig6682:8737..8836Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6682 8738..8836 -
1622930790.3503664-UTR-H-paniculata_contig6682:10746..108381622930790.3503664-UTR-H-paniculata_contig6682:10746..10838Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6682 10747..10838 -
1691481453.4384558-UTR-H-paniculata_contig6682:10746..108381691481453.4384558-UTR-H-paniculata_contig6682:10746..10838Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6682 10747..10838 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930790.3158655-CDS-H-paniculata_contig6682:8836..89661622930790.3158655-CDS-H-paniculata_contig6682:8836..8966Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6682 8837..8966 -
1691481453.421677-CDS-H-paniculata_contig6682:8836..89661691481453.421677-CDS-H-paniculata_contig6682:8836..8966Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6682 8837..8966 -
1622930790.3322003-CDS-H-paniculata_contig6682:10618..107461622930790.3322003-CDS-H-paniculata_contig6682:10618..10746Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6682 10619..10746 -
1691481453.4298847-CDS-H-paniculata_contig6682:10618..107461691481453.4298847-CDS-H-paniculata_contig6682:10618..10746Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6682 10619..10746 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6682.14570.1

>prot_H-paniculata_contig6682.14570.1 ID=prot_H-paniculata_contig6682.14570.1|Name=mRNA_H-paniculata_contig6682.14570.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
MPRAFTHHTFISVFFRLSGGCMVSVMKILFWSGVMAAVLGFNGCQCRSGS
RSFARTGSSRHITGFVPPIMCVIYMHQGSSFLNKA*
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mRNA from alignment at H-paniculata_contig6682:8738..10838-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6682.14570.1 ID=mRNA_H-paniculata_contig6682.14570.1|Name=mRNA_H-paniculata_contig6682.14570.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2101bp|location=Sequence derived from alignment at H-paniculata_contig6682:8738..10838- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAGGATCGCGGGTTCGGTTGGATGGGGTGAGACGACCTCCCAGCCAATA
GAGCACCGTACTGCCCGTGCTACGACTAGGTGGTGGTGCCCTATGCCCCG
TGCATTCACTCATCACACCTTTATTTCTGTCTTCTTTCGATTGTCGGGTG
GCTGTATGGTTTCGGTGATGAAGATCCTATTTTGGAGCGGCGTCATGGCC
GCTGTGCTCGGGTTCAACGGGTGAGCGTGGAGACAGCAACATGTTTCTGC
CTCGCTGCTTCTATCCGCTACTACAGACAGTACTATACTGTGCGGTATTA
CAAGGAATGTTCCAGTTGCACAATATGCAGTGTCGTGCAATAGGGAGAAG
TGGCTTCGGGTAGAGGGAGGGAGGGCTGTTCTTGGTAAATTGCAGTGGAG
AATCGTATGTACGTCTATCTTACAAAAGTGAAGCAGTATCATGGCACCAT
GGCAGAAGTGTGAGCACAAACGCGTTTTGCCATCCACTTGAGTCTGTACG
TTGTGCTGGTACTCCGTCCTCGGTACAATACAGTAAAAACGATGGATCGA
TTCTGATTGGCTCCGTTCAACAAGCTTGCTGCCTTGGCAGATGCGATCTC
ATGTATGGGACGGCGTCAGAATTGGCCTTATCATCGTGGTGCGCTACATA
TAGCATGGTACCCACCCTCCCGACTTTTTAGCTGTGGATGCGGTACCTCC
TTCTATTGTTCGAGTTGTCGGCTCAGTACAACAGCGTTCCAAATCCTACA
GAGAGCAAATGGTTCAGATGATCCGCTTGCCACCATTTACTGTCTGTTTA
CCCTGTAAGTATCTCCAGTCTGGTAAAAGCACGGAGTGTACAGCGTGGGT
GAGGTGCGGATTACCCCCCCCCCGTCTGATTTTTAATGTATATTGCTTCT
GACAAGTAGGCCGCCCAGCTTTTCAATACAAGCTACATGACAGGTACATT
CATATATTTACTTATCTAGTCACCGTTTTTACCAGACGCTGTTTTGCAAT
AAAAGAAAGGTCCCTGACAGTCCCGTCGCGAAGAGGTGGGGGGGGGGGGC
AGGGCCGTTTCCCGTAGTAGGGTTTGGGGCGTAGAGTTTGGGGCTTTGAC
GTCGTGGTGGTGTAGCACCAACTGACGTTTGAGATCAGCTGGATAACCTC
AAAAGGGCAGGATAGAGTTGTTGTATAAGCATTGTAGATTAACCAACTGT
GTGGCAAATGGGTTGGCTGACTTATGAACGAGGCTTGCGCTGGGTGAATG
GTGTATGTTGTCAATTTGTATCATGTCAGCCCGCGCCCCCCTGTATATGA
GCTATTACACTCGAAAAATAATGACTGAGTAGTCCCGCCTAACTTGATCT
ATCGGTCGTATAAGTAGTTGCTTCGCTTTCGTTTTACCCGTTTGACCGCA
AAGGGGTCGAGTTGGACATCATCGGACACGCAGAAATGGACCGTTATTTT
TGTTTTGCAGCAAGCGCAACGTCTAGCTGCATCATATTATACGATATCCA
AACCCTGGGATATGTGAATAGTCTTCGTGATAGGATCCTTCGGACCTGGT
CTGATTTCACTAACCCAGGGTTTGACTGCTGTGTGCTTGCCTGTCTATCT
TTTTTGTATTTTGTGTACACTATTGTCGTCTACAACAACTGCACCGCAGG
GCCCTGCGCTGCTGTACCTATCGCCATCATATTTCGATCAGTTTTCCGTA
TGTTCTCCGTACTAGATAATCTCCCCCTGAGAAGATGTGCTATAGTAATA
TCGACCCATCTTGATCAACGATGTACCAAGTCGGGTACAGTAACGTTAAC
GCCGCAGTACCCCCCCCTCCCCCGCGCTCGCTACGTCCCCTCGGACTATC
ATAATGGCGGTAATGGTGCTAGGTGCCAGTGTCGCTCGGGGAGTCGAAGC
TTCGCCCGGACAGGATCTTCACGGCACATAACAGGCTTCGTTCCGCCGAT
CATGTGTGTGATTTATATGCACCAAGGCTCTAGCTTCTTAAATAAAGCTT
AGAAAGAATGGACGTAGATTCAGCGGGGAGTGCTGTTAAGTTTTAGGATG
AAACTGAGTGATTTTGAACTGAGAGTGACCCATTGATTTCACTTCTCCTT
C
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Coding sequence (CDS) from alignment at H-paniculata_contig6682:8738..10838-

>mRNA_H-paniculata_contig6682.14570.1 ID=mRNA_H-paniculata_contig6682.14570.1|Name=mRNA_H-paniculata_contig6682.14570.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig6682:8738..10838- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCCGTGCATTCACTCATCACACCTTTATTTCTGTCTTCTTTCGATT
GTCGGGTGGCTGTATGGTTTCGGTGATGAAGATCCTATTTTGGAGCGGCG
TCATGGCCGCTGTGCTCGGGTTCAACGGATGCCCCGTGCATTCACTCATC
ACACCTTTATTTCTGTCTTCTTTCGATTGTCGGGTGGCTGTATGGTTTCG
GTGATGAAGATCCTATTTTGGAGCGGCGTCATGGCCGCTGTGCTCGGGTT
CAACGGGTGCCAGTGTCGCTCGGGGAGTCGAAGCTTCGCCCGGACAGGAT
CTTCACGGCACATAACAGGCTTCGTTCCGCCGATCATGTGTGTGATTTAT
ATGCACCAAGGCTCTAGCTTCTTAAATAAAGCTTAGGTGCCAGTGTCGCT
CGGGGAGTCGAAGCTTCGCCCGGACAGGATCTTCACGGCACATAACAGGC
TTCGTTCCGCCGATCATGTGTGTGATTTATATGCACCAAGGCTCTAGCTT
CTTAAATAAAGCTTAG
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