mRNA_H-paniculata_contig66808.14568.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig66808.14568.1
Unique NamemRNA_H-paniculata_contig66808.14568.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig66808.14568.1 vs. uniprot
Match: A0A6H5KN27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN27_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.920e-9
Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:    7 GSDLIVTSAHRTFTRLFGDQYEKGLPCYIGHAHVQVDNCVGENKNNFTLAYFAALVALGVIGT 195
            GS+L+ T+      RL     + G   YI   H+Q+DNCVGENKNN  LA+   LVA GVIG+
Sbjct:   10 GSNLVCTALWLALKRLSAMWTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGS 72
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BLAST of mRNA_H-paniculata_contig66808.14568.1 vs. uniprot
Match: A0A6H5KAY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY2_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 3.250e-9
Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:    7 GSDLIVTSAHRTFTRLFGDQYEKGLPCYIGHAHVQVDNCVGENKNNFTLAYFAALVALGVIGT 195
            GS+L+ T+      RL     + G   YI   H+Q+DNCVGENKNN  LA+   LVA GVIG+
Sbjct:   10 GSNLVCTALWLALKRLSAMWTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGS 72
[Close]
BLAST of mRNA_H-paniculata_contig66808.14568.1 vs. uniprot
Match: A0A6H5KA02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA02_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 3.280e-9
Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:    7 GSDLIVTSAHRTFTRLFGDQYEKGLPCYIGHAHVQVDNCVGENKNNFTLAYFAALVALGVIGT 195
            GS+L+ T+      RL     + G   YI   H+Q+DNCVGENKNN  LA+   LVA GVIG+
Sbjct:  122 GSNLVCTALWLALKRLSAMGTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGS 184
[Close]
BLAST of mRNA_H-paniculata_contig66808.14568.1 vs. uniprot
Match: A0A6H5KK38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK38_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 7.510e-8
Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:    7 GSDLIVTSAHRTFTRLFGDQYEKGLPCYIGHAHVQVDNCVGENKNNFTLAYFAALVALGVIGT 195
            GS+L+ T+      RL     + G   +I   H+Q+DNCVGENKNN  +A+   LVA GVIG+
Sbjct:  237 GSNLVCTALWLALKRLSEMWNKPGERFHIKRLHLQLDNCVGENKNNIVMAFIGGLVAAGVIGS 299
[Close]
BLAST of mRNA_H-paniculata_contig66808.14568.1 vs. uniprot
Match: A0A6H5JAR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAR9_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 3.550e-7
Identity = 28/62 (45.16%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:    7 GSDLIVTSAHRTFTRLFGDQYEKGLPCYIGHAHVQVDNCVGENKNNFTLAYFAALVALGVIG 192
            GS+L  T+      RL     + G   +I   H+Q+DNCVGENKNN  +A+   LVA GVIG
Sbjct:   10 GSNLECTTLWLALKRLSAMWTKPGERFHIKRRHLQLDNCVGENKNNIVMAFIGGLVAAGVIG 71
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig66808.14568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KN27_9PHAE1.920e-947.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAY2_9PHAE3.250e-947.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA02_9PHAE3.280e-947.62Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KK38_9PHAE7.510e-844.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAR9_9PHAE3.550e-745.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig66808contigH-paniculata_contig66808:73..273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930790.2483845-CDS-H-paniculata_contig66808:72..2731622930790.2483845-CDS-H-paniculata_contig66808:72..273Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig66808 73..273 -
1691481453.3990498-CDS-H-paniculata_contig66808:72..2731691481453.3990498-CDS-H-paniculata_contig66808:72..273Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig66808 73..273 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig66808.14568.1prot_H-paniculata_contig66808.14568.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig66808 73..273 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig66808.14568.1

>prot_H-paniculata_contig66808.14568.1 ID=prot_H-paniculata_contig66808.14568.1|Name=mRNA_H-paniculata_contig66808.14568.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
TTGSDLIVTSAHRTFTRLFGDQYEKGLPCYIGHAHVQVDNCVGENKNNFT
LAYFAALVALGVIGTVN
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mRNA from alignment at H-paniculata_contig66808:73..273-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig66808.14568.1 ID=mRNA_H-paniculata_contig66808.14568.1|Name=mRNA_H-paniculata_contig66808.14568.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at H-paniculata_contig66808:73..273- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAACAGGTAGCGATCTCATCGTAACCTCTGCTCACCGAACGTTTACAAG
ATTATTCGGCGATCAGTATGAAAAGGGCCTTCCGTGCTACATTGGCCATG
CCCATGTCCAAGTGGACAACTGCGTCGGCGAGAATAAGAACAACTTTACA
CTTGCATACTTCGCAGCACTGGTGGCGCTTGGAGTGATTGGTACTGTGAA
C
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Coding sequence (CDS) from alignment at H-paniculata_contig66808:73..273-

>mRNA_H-paniculata_contig66808.14568.1 ID=mRNA_H-paniculata_contig66808.14568.1|Name=mRNA_H-paniculata_contig66808.14568.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig66808:73..273- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAACAGGTAGCGATCTCATCGTAACCTCTGCTCACCGAACGTTTACAAG
ATTATTCGGCGATCAGTATGAAAAGGGCCTTCCGTGCTACATTGGCCATG
CCCATGTCCAAGTGGACAACTGCGTCGGCGAGAATAAGAACAACTTTACA
CTTGCATACTTCGCAGCACTGGTGGCGCTTGGAGTGATTGGTACTGTGAA
CACAACAGGTAGCGATCTCATCGTAACCTCTGCTCACCGAACGTTTACAA
GATTATTCGGCGATCAGTATGAAAAGGGCCTTCCGTGCTACATTGGCCAT
GCCCATGTCCAAGTGGACAACTGCGTCGGCGAGAATAAGAACAACTTTAC
ACTTGCATACTTCGCAGCACTGGTGGCGCTTGGAGTGATTGGTACTGTGA
AC
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