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Homology
BLAST of mRNA_H-paniculata_contig668.14565.1 vs. uniprot
Match: A0A6H5K9W1_9PHAE (C-CAP/cofactor C-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9W1_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 1.010e-15 Identity = 60/139 (43.17%), Postives = 73/139 (52.52%), Query Frame = 1
Query: 1528 GGGRHLGEVPLQLKAMLQYAYSDRGIDLRKWFNMAGEEEKEEEDNDDVQGSITTSLPLLTIVQFEIVLAGLAEGIKAGLSAEEQAVIDAAXXXXXXXXXXXXXXXXXXSPPSGTSLDVPVRVQQQQHVDIDRLLDLCGI 1944
GGG EVPL L+A+L YA + RGIDLRKWF++ G + E ED + T LLT VQFE+VLAGL EG+KAGLS +E+ ID A SG +D+ RLLDLCGI
Sbjct: 626 GGGVRRAEVPLHLRAVLLYASTQRGIDLRKWFDLGGGGDGETEDEGQAGEKVAT---LLTRVQFELVLAGLGEGLKAGLSEDERHEIDTAIAPRVIEAAVAAASATPGR--SGARSSSSEGNNGCSVIDVGRLLDLCGI 759
BLAST of mRNA_H-paniculata_contig668.14565.1 vs. uniprot
Match: D7G8D4_ECTSI (C-CAP/cofactor C-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D4_ECTSI) HSP 1 Score: 67.4 bits (163), Expect = 8.340e-8 Identity = 40/80 (50.00%), Postives = 50/80 (62.50%), Query Frame = 1
Query: 1549 EVPLQLKAMLQYAYSDRGIDLRKWFNMAGEEEKEEEDNDDVQGSITTSLPLLTIVQFEIVLAGLAEGIKAGLSAEEQAVI 1788
EVPL L+A+L YA + RGIDLRKWF++ G + E ED LLT VQFE+VLAGLAEG+K + + A I
Sbjct: 697 EVPLHLRAVLLYASTQRGIDLRKWFDLGGGGDGEMEDEGQAGEKAAA---LLTRVQFELVLAGLAEGLKESVGQDVVADI 773
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 66.6 |
| Seed ortholog evalue | 4.9e-08 |
| Seed eggNOG ortholog | 2880.D7G8D4 |
| KEGG ko | ko:K18272 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | post-chaperonin tubulin folding pathway |
| EggNOG OGs | KOG2512@1,KOG2512@2759 |
| COG Functional cat. | Q |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko04147 |
| Exons | 3 |
| Model size | 1985 |
| Cds size | 1983 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig668.14565.1 >prot_H-paniculata_contig668.14565.1 ID=prot_H-paniculata_contig668.14565.1|Name=mRNA_H-paniculata_contig668.14565.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=661bp
SNSEPKARGHGPVSVTAAAAVISSVTSDLKERDRRARPHAGIGSVAWNPA RIASSSRNDSAADADADAATGSTSTVPTSAATAASSAIEPSTPTRTPSPC RMQTIGWNPSRLAVLTGVTPSSSLSEQTLTNGIAPGAGGGSGSHSLGQTE VGALLRPSEDVERPRRTRPRDGDGDQEHLEEGLGLELEEQSRTSVESARI LGSPSPPPAESESDDDDDDDDDDGDDDEEEKGEKDHGRSVAIASEGRGHR VGWNPNPIVVCGRQWLEEEHEERTGRGIAEARLQNHSTMDLSSVSYCSEP AVTAEEAAAAAAGAAARDIPTVGTCSYNLSVFSSLSPPDPTPADTQAITT NRLYLADLQRKLIGGAAPANGNGGGVSRSFTSGFTESTADSAGGCSNASS QQQPAPMISPLASNLAMAAAATAALERDSAPTRVGWNASRIGDPAVPAPT RNCVARKVAWSKETTAPSMAAATAAASERGMTGVGLRNARAGGSDGGRTT VGAAKVTGAGGGRHLGEVPLQLKAMLQYAYSDRGIDLRKWFNMAGEEEKE EEDNDDVQGSITTSLPLLTIVQFEIVLAGLAEGIKAGLSAEEQAVIDAAA APHVVAAAASVAAAAAVSPPSGTSLDVPVRVQQQQHVDIDRLLDLCGINR QPRRGGGARG* back to topmRNA from alignment at H-paniculata_contig668:14838..18271- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig668.14565.1 ID=mRNA_H-paniculata_contig668.14565.1|Name=mRNA_H-paniculata_contig668.14565.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3434bp|location=Sequence derived from alignment at H-paniculata_contig668:14838..18271- (Halopteris paniculata Hal_grac_a_UBK monoicous) AGCAACAGCGAACCAAAGGCACGTGGTCATGGGCCCGTCTCCGTGACGGC
GGCGGCGGCGGTGATATCCAGCGTGACCAGTGATTTGAAGGAACGGGACC
GTCGAGCACGACCACATGCTGGCATCGGAAGCGTAGCGTGGAACCCCGCC
CGTATCGCGTCGAGCTCCAGAAACGATTCCGCCGCCGACGCCGACGCTGA
CGCCGCCACGGGCTCCACGAGCACCGTCCCGACCTCAGCGGCGACCGCGG
CGAGCTCAGCGATTGAGCCGTCGACCCCGACGCGCACCCCATCACCCTGT
CGTATGCAAACTATCGGGTGGAATCCTTCCCGCCTTGCAGTCTTGACCGG
GGTAACCCCGTCGTCGTCTCTTTCCGAGCAAACTCTGACGAATGGCATTG
CTCCTGGAGCTGGCGGTGGCAGTGGTAGTCATTCGTTGGGGCAGACCGAA
GTCGGGGCGCTGCTGCGACCGTCTGAGGACGTCGAGCGGCCTCGGCGCAC
GAGGCCAAGGGATGGGGACGGCGACCAGGAGCACTTAGAGGAAGGGTTAG
GGCTTGAGCTAGAAGAGCAGTCCCGGACGTCGGTCGAGTCTGCGCGGATA
CTTGGGTCGCCCTCGCCGCCGCCAGCCGAGTCCGAGTCCGATGACGACGA
TGATGACGATGATGACGATGGTGATGACGATGAAGAGGAGAAGGGAGAAA
AGGACCACGGACGGTCGGTGGCGATTGCTTCGGAGGGTCGGGGTCATCGT
GTAGGTTGGAACCCGAACCCGATTGTTGTTTGCGGCCGCCAGTGGTTGGA
AGAGGAACATGAGGAGCGTACGGGGCGGGGAATTGCAGAGGCACGTCTGC
AGAATCATTCGACGATGGACTTATCTTCTGTTTCTTATTGTTCTGAACCT
GCAGTGACGGCGGAAGAGGCGGCGGCGGCCGCGGCCGGGGCTGCGGCTCG
AGATATCCCGACCGTGGGGACATGCTCGTACAATCTATCAGTTTTTTCTT
CGCTATCTCCGCCTGATCCTACCCCAGCCGACACGCAAGCTATTACCACA
AATCGGTTATATTTAGCAGACTTACAAAGGAAACTCATAGGAGGAGCAGC
ACCGGCTAACGGGAACGGCGGCGGGGTGTCAAGGAGCTTCACTTCGGGTT
TCACCGAAAGCACCGCCGACAGCGCTGGCGGTTGCAGCAACGCCAGTAGC
CAGCAGCAGCCGGCCCCAATGATTTCACCGTTGGCCTCTAACCTGGCGAT
GGCTGCTGCGGCGACTGCCGCCCTTGAGCGTGACTCCGCGCCGACTCGTG
TCGGTTGGAATGCCTCTCGGATCGGAGACCCTGCAGTTCCCGCTCCAACA
AGGAATTGCGTGGCACGGAAGGTCGCCTGGTCCAAGGAGACTACGGCCCC
GTCGATGGCAGCGGCGACGGCGGCGGCGTCCGAAAGGGGAATGACGGGAG
TTGGATTAAGGAACGCTAGGGCCGGCGGCAGCGACGGCGGACGAACGACG
GTCGGGGCAGCAAAGGTGACCGGGGCTGGAGGGGGCAGACATCTCGGGGA
AGTGCCGCTGCAGCTCAAGGCGATGCTACAGTACGCCTATTCCGACCGCG
GGATTGATTTGCGCAAGTGGTTTAATATGGCCGGCGAGGAAGAGAAGGAG
GAAGAAGACAACGACGACGTGCAAGGTAGCTGGGCTTTGAAGACGTGATA
AGTTGATGGTGGTGTGGTGGCCACCTTAGGAAGCACGTTACAAGGCTTCA
TAAGCACCTAACGTCTATCGAGGAAAGCTACCCTCAATTTCACATCGGCG
ACACCGAGGGGTGACTTGTCTGCTTCTCGTCCTCAAGGTTATGGGTTCGA
ACCCCTGCATCGATACACCAAAAAAGAAAAAGTTGAGCGTGAAATCACAA
GTCACAACTATGGTGGGGGAAGCAAGCAACAACTGCAGTACTCATGTAAA
GAAAAGAGACTATACCTAACATCTCGCCGCCTGCCGATCGGATTCCGGTT
ACCGTTACGACTAACATTTTCCAAAATGAAACGTGAAGAAAGGGGGGGGG
GGATAATGTCGGGAGCCGCGTTAGGAATATCTCAAAAAGGGTAATAGTCG
CCCAACGTCTGTCGAGGATAGGTACCCTCATTTTCACAGTTGCGCTTGAT
ATTTTGATGACTTTTGCGCAGTCACGCCGTCTTTGTTAAAAAAAGCCGAT
GCCTTCACCCATTCAAGTCACGGCAGGCCGGTCCAGGACATGAATACTTT
CGCTGTTCACGCGGCGCGTTCTCCTAACTGTCCTGGCGTATCGGTTCGTA
CGAGTACGTTGCCACGTTCACAACGTACTGTGTGAAACAGAGTTCGCGTG
GGTGGCAATTCTTTTTCTTTTTGGCTCGACTGCTCTTGCGGGCTCAATCG
ACCGATGACGATACCGTTATTTTCGTCCCCCGCCCGCCCGCCCGCCCGCC
TGCTCGCCTGCTCGCCCGCCCGCCCGCCGGCTGGCCTTGCGGGCCGGATG
TTGCGTGGGCTTGTCGAACTTTCAAACAAACGCGCTGTTGCGAACATGTT
TTGTTCTACAACTTCCCGGACCGCAGGATCCATCACGACTTCGCTGCCGC
TGTTGACTATCGTGCAGTTCGAGATTGTGCTAGCTGGCCTAGCGGAAGGT
ATCAAGGTGTGAAAAGCGCGCGCGGCCGCGGCGGCGGTGTGATCGGCGGG
GGCGGGGACGAGGGGCACTAGAATCCTTAGAACCGATTTCGCCTATAAAA
AAACGTCGTTTTGTTGATAAGCGATCTACTCCTAGCAGCGAGAGACAGTA
TTCATGCAGTAAACGTGCTTGTAAAAGGCGGTCCCGGCTTCCGGCTTCCA
GCTTCCTGCCCTGCCGTCCTTAAATGTTTTAAATTTTGTGTGTCGATACT
CTGTTCCTGTTTTTCGTTCTTCGTTTGTGATGATTTCTAGAGAGAGGGAA
AGAGTGGAGGTGGGACCACGTTTATGGACAAGCTTGTATGTAACCACATT
GCACTATTCGGAACTCCCCTCAACGTTAACTTTTTAACATTGCATACCAT
GTATGACAGGGTGTACGTCTACCCCTCATTTTTATTCGACGTGCGTCGTT
CACCTGGGGAACCAATTTCCAATTATTTTAGAGGGACTTTTCCACTTTCT
CCGCAATACCCCCCCCTGAACTTCATACTGAATGAAATGGAAATACCGTA
CCATAGGCAGGTTTGTCGGCGGAGGAGCAGGCCGTGATAGACGCCGCTGC
AGCCCCACATGTCGTCGCAGCAGCAGCTTCAGTAGCAGCAGCAGCAGCTG
TTTCCCCTCCAAGCGGTACCTCCTTGGATGTTCCAGTTAGGGTGCAACAG
CAGCAGCATGTGGATATAGACCGCTTGTTGGATCTATGCGGAATCAACCG
GCAGCCGCGGCGGGGGGGGGGGGCGAGAGGTTAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig668:14838..18271- >mRNA_H-paniculata_contig668.14565.1 ID=mRNA_H-paniculata_contig668.14565.1|Name=mRNA_H-paniculata_contig668.14565.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3966bp|location=Sequence derived from alignment at H-paniculata_contig668:14838..18271- (Halopteris paniculata Hal_grac_a_UBK monoicous) AGCAACAGCGAACCAAAGGCACGTGGTCATGGGCCCGTCTCCGTGACGGC GGCGGCGGCGGTGATATCCAGCGTGACCAGTGATTTGAAGGAACGGGACC GTCGAGCACGACCACATGCTGGCATCGGAAGCGTAGCGTGGAACCCCGCC CGTATCGCGTCGAGCTCCAGAAACGATTCCGCCGCCGACGCCGACGCTGA CGCCGCCACGGGCTCCACGAGCACCGTCCCGACCTCAGCGGCGACCGCGG CGAGCTCAGCGATTGAGCCGTCGACCCCGACGCGCACCCCATCACCCTGT CGTATGCAAACTATCGGGTGGAATCCTTCCCGCCTTGCAGTCTTGACCGG GGTAACCCCGTCGTCGTCTCTTTCCGAGCAAACTCTGACGAATGGCATTG CTCCTGGAGCTGGCGGTGGCAGTGGTAGTCATTCGTTGGGGCAGACCGAA GTCGGGGCGCTGCTGCGACCGTCTGAGGACGTCGAGCGGCCTCGGCGCAC GAGGCCAAGGGATGGGGACGGCGACCAGGAGCACTTAGAGGAAGGGTTAG GGCTTGAGCTAGAAGAGCAGTCCCGGACGTCGGTCGAGTCTGCGCGGATA CTTGGGTCGCCCTCGCCGCCGCCAGCCGAGTCCGAGTCCGATGACGACGA TGATGACGATGATGACGATGGTGATGACGATGAAGAGGAGAAGGGAGAAA AGGACCACGGACGGTCGGTGGCGATTGCTTCGGAGGGTCGGGGTCATCGT GTAGGTTGGAACCCGAACCCGATTGTTGTTTGCGGCCGCCAGTGGTTGGA AGAGGAACATGAGGAGCGTACGGGGCGGGGAATTGCAGAGGCACGTCTGC AGAATCATTCGACGATGGACTTATCTTCTGTTTCTTATTGTTCTGAACCT GCAGTGACGGCGGAAGAGGCGGCGGCGGCCGCGGCCGGGGCTGCGGCTCG AGATATCCCGACCGTGGGGACATGCTCGTACAATCTATCAGTTTTTTCTT CGCTATCTCCGCCTGATCCTACCCCAGCCGACACGCAAGCTATTACCACA AATCGGTTATATTTAGCAGACTTACAAAGGAAACTCATAGGAGGAGCAGC ACCGGCTAACGGGAACGGCGGCGGGGTGTCAAGGAGCTTCACTTCGGGTT TCACCGAAAGCACCGCCGACAGCGCTGGCGGTTGCAGCAACGCCAGTAGC CAGCAGCAGCCGGCCCCAATGATTTCACCGTTGGCCTCTAACCTGGCGAT GGCTGCTGCGGCGACTGCCGCCCTTGAGCGTGACTCCGCGCCGACTCGTG TCGGTTGGAATGCCTCTCGGATCGGAGACCCTGCAGTTCCCGCTCCAACA AGGAATTGCGTGGCACGGAAGGTCGCCTGGTCCAAGGAGACTACGGCCCC GTCGATGGCAGCGGCGACGGCGGCGGCGTCCGAAAGGGGAATGACGGGAG TTGGATTAAGGAACGCTAGGGCCGGCGGCAGCGACGGCGGACGAACGACG GTCGGGGCAGCAAAGGTGACCGGGGCTGGAGGGGGCAGACATCTCGGGGA AGTGCCGCTGCAGCTCAAGGCGATGCTACAGTACGCCTATTCCGACCGCG GGATTGATTTGCGCAAGTGGTTTAATATGGCCGGCGAGGAAGAGAAGGAG GAAGAAGACAACGACGACGTGCAAGAGCAACAGCGAACCAAAGGCACGTG GTCATGGGCCCGTCTCCGTGACGGCGGCGGCGGCGGTGATATCCAGCGTG ACCAGTGATTTGAAGGAACGGGACCGTCGAGCACGACCACATGCTGGCAT CGGAAGCGTAGCGTGGAACCCCGCCCGTATCGCGTCGAGCTCCAGAAACG ATTCCGCCGCCGACGCCGACGCTGACGCCGCCACGGGCTCCACGAGCACC GTCCCGACCTCAGCGGCGACCGCGGCGAGCTCAGCGATTGAGCCGTCGAC CCCGACGCGCACCCCATCACCCTGTCGTATGCAAACTATCGGGTGGAATC CTTCCCGCCTTGCAGTCTTGACCGGGGTAACCCCGTCGTCGTCTCTTTCC GAGCAAACTCTGACGAATGGCATTGCTCCTGGAGCTGGCGGTGGCAGTGG TAGTCATTCGTTGGGGCAGACCGAAGTCGGGGCGCTGCTGCGACCGTCTG AGGACGTCGAGCGGCCTCGGCGCACGAGGCCAAGGGATGGGGACGGCGAC CAGGAGCACTTAGAGGAAGGGTTAGGGCTTGAGCTAGAAGAGCAGTCCCG GACGTCGGTCGAGTCTGCGCGGATACTTGGGTCGCCCTCGCCGCCGCCAG CCGAGTCCGAGTCCGATGACGACGATGATGACGATGATGACGATGGTGAT GACGATGAAGAGGAGAAGGGAGAAAAGGACCACGGACGGTCGGTGGCGAT TGCTTCGGAGGGTCGGGGTCATCGTGTAGGTTGGAACCCGAACCCGATTG TTGTTTGCGGCCGCCAGTGGTTGGAAGAGGAACATGAGGAGCGTACGGGG CGGGGAATTGCAGAGGCACGTCTGCAGAATCATTCGACGATGGACTTATC TTCTGTTTCTTATTGTTCTGAACCTGCAGTGACGGCGGAAGAGGCGGCGG CGGCCGCGGCCGGGGCTGCGGCTCGAGATATCCCGACCGTGGGGACATGC TCGTACAATCTATCAGTTTTTTCTTCGCTATCTCCGCCTGATCCTACCCC AGCCGACACGCAAGCTATTACCACAAATCGGTTATATTTAGCAGACTTAC AAAGGAAACTCATAGGAGGAGCAGCACCGGCTAACGGGAACGGCGGCGGG GTGTCAAGGAGCTTCACTTCGGGTTTCACCGAAAGCACCGCCGACAGCGC TGGCGGTTGCAGCAACGCCAGTAGCCAGCAGCAGCCGGCCCCAATGATTT CACCGTTGGCCTCTAACCTGGCGATGGCTGCTGCGGCGACTGCCGCCCTT GAGCGTGACTCCGCGCCGACTCGTGTCGGTTGGAATGCCTCTCGGATCGG AGACCCTGCAGTTCCCGCTCCAACAAGGAATTGCGTGGCACGGAAGGTCG CCTGGTCCAAGGAGACTACGGCCCCGTCGATGGCAGCGGCGACGGCGGCG GCGTCCGAAAGGGGAATGACGGGAGTTGGATTAAGGAACGCTAGGGCCGG CGGCAGCGACGGCGGACGAACGACGGTCGGGGCAGCAAAGGTGACCGGGG CTGGAGGGGGCAGACATCTCGGGGAAGTGCCGCTGCAGCTCAAGGCGATG CTACAGTACGCCTATTCCGACCGCGGGATTGATTTGCGCAAGTGGTTTAA TATGGCCGGCGAGGAAGAGAAGGAGGAAGAAGACAACGACGACGTGCAAG GATCCATCACGACTTCGCTGCCGCTGTTGACTATCGTGCAGTTCGAGATT GTGCTAGCTGGCCTAGCGGAAGGTATCAAGGATCCATCACGACTTCGCTG CCGCTGTTGACTATCGTGCAGTTCGAGATTGTGCTAGCTGGCCTAGCGGA AGGTATCAAGGCAGGTTTGTCGGCGGAGGAGCAGGCCGTGATAGACGCCG CTGCAGCCCCACATGTCGTCGCAGCAGCAGCTTCAGTAGCAGCAGCAGCA GCTGTTTCCCCTCCAAGCGGTACCTCCTTGGATGTTCCAGTTAGGGTGCA ACAGCAGCAGCATGTGGATATAGACCGCTTGTTGGATCTATGCGGAATCA ACCGGCAGCCGCGGCGGGGGGGGGGGGCGAGAGGTTAGGCAGGTTTGTCG GCGGAGGAGCAGGCCGTGATAGACGCCGCTGCAGCCCCACATGTCGTCGC AGCAGCAGCTTCAGTAGCAGCAGCAGCAGCTGTTTCCCCTCCAAGCGGTA CCTCCTTGGATGTTCCAGTTAGGGTGCAACAGCAGCAGCATGTGGATATA GACCGCTTGTTGGATCTATGCGGAATCAACCGGCAGCCGCGGCGGGGGGG GGGGGCGAGAGGTTAG back to top
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