mRNA_H-paniculata_contig668.14564.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig668.14564.1
Unique NamemRNA_H-paniculata_contig668.14564.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig668.14564.1 vs. uniprot
Match: A0A6H5K9W1_9PHAE (C-CAP/cofactor C-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9W1_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 5.010e-11
Identity = 45/80 (56.25%), Postives = 54/80 (67.50%), Query Frame = 1 
Query:   16 EEDEALLRRVTGQADLYNRLLASLGLKQP-VGSAPGSHAA-WEARIRRSTVSLKALGKALGGVGLPLGKARVAAVAKLAC 249
            E DE  LRRV  QADLY R+LASLGLKQP VGS+ G+  A W+A +R S+V L+A  K L  VGL L + R  A+A  AC
Sbjct:  826 EADETALRRVAHQADLYGRVLASLGLKQPAVGSSQGTALADWKASLRVSSVPLEAFRKGLAEVGLHLSRTRAIALATRAC 905
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BLAST of mRNA_H-paniculata_contig668.14564.1 vs. uniprot
Match: D7G8D4_ECTSI (C-CAP/cofactor C-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D4_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 2.150e-8
Identity = 43/77 (55.84%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:   22 DEALLRRVTGQADLYNRLLASLGLKQPV-GSAPGSHAA-WEARIRRSTVSLKALGKALGGVGLPLGKARVAAVAKLA 246
            DE  LRR+  QADL++R+LASLGLKQPV GS+ GS  A  EA +R STV L+A  K L  VGL L + R  A+A  A
Sbjct:  811 DETALRRIVQQADLFDRVLASLGLKQPVVGSSQGSTLADREASLRVSTVPLEAFRKGLAEVGLHLSRTRAIALATRA 887
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig668.14564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K9W1_9PHAE5.010e-1156.25C-CAP/cofactor C-like domain-containing protein n=... [more]
D7G8D4_ECTSI2.150e-855.84C-CAP/cofactor C-like domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig668contigH-paniculata_contig668:10582..14226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue3.8e-08
Seed eggNOG ortholog2880.D7G8D4
KEGG koko:K18272
Hectar predicted targeting categoryother localisation
EggNOG free text desc.post-chaperonin tubulin folding pathway
EggNOG OGsKOG2512@1,KOG2512@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Exons3
Model size685
Cds size684
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig668.14564.1prot_H-paniculata_contig668.14564.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig668 10583..14226 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930789.8196504-CDS-H-paniculata_contig668:10582..110441622930789.8196504-CDS-H-paniculata_contig668:10582..11044Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig668 10583..11044 -
1691481453.1876907-CDS-H-paniculata_contig668:10582..110441691481453.1876907-CDS-H-paniculata_contig668:10582..11044Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig668 10583..11044 -
1622930789.8387072-CDS-H-paniculata_contig668:11959..121031622930789.8387072-CDS-H-paniculata_contig668:11959..12103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig668 11960..12103 -
1691481453.1994677-CDS-H-paniculata_contig668:11959..121031691481453.1994677-CDS-H-paniculata_contig668:11959..12103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig668 11960..12103 -
1622930789.86026-CDS-H-paniculata_contig668:14148..142261622930789.86026-CDS-H-paniculata_contig668:14148..14226Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig668 14149..14226 -
1691481453.2107995-CDS-H-paniculata_contig668:14148..142261691481453.2107995-CDS-H-paniculata_contig668:14148..14226Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig668 14149..14226 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig668.14564.1

>prot_H-paniculata_contig668.14564.1 ID=prot_H-paniculata_contig668.14564.1|Name=mRNA_H-paniculata_contig668.14564.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=228bp
AQQGVEEDEALLRRVTGQADLYNRLLASLGLKQPVGSAPGSHAAWEARIR
RSTVSLKALGKALGGVGLPLGKARVAAVAKLACNGKLIPPPPCRTQRRLL
RRPAAVLPPAAAAAAAASTTTTTPRNRGNNNSGHRNNNNGDEDESNRKNI
YRKVTTNGHLYPNKNNQANDIDISTIKGIDDGDRRRVSSWDLRTYLLKLR
VEPKSREARDQRRRRFFAGGGGGGQGYS
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mRNA from alignment at H-paniculata_contig668:10582..14226-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig668.14564.1 ID=mRNA_H-paniculata_contig668.14564.1|Name=mRNA_H-paniculata_contig668.14564.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3645bp|location=Sequence derived from alignment at H-paniculata_contig668:10582..14226- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCAGCAGGGCGTTGAAGAGGATGAGGCGTTGTTGAGGAGGGTGACGGG
GCAGGCTGACCTGTACAATCGTTTGCTGGTGAGTCTTGGAGAAGAGGATG
AGATGCTGGCGTGGGTTTTAGTAAAGTGCCATTCTGTGCGAGTTTTTTTG
TGGTCGGGATTGGGGCGGTGAGGAGGGGGATTAGGGTCGATGTTGTTAGT
GTCCTTCGTTTTTTCATGTGCCTGTATATGCTAACACAATTATGGTTAAT
ATGCTTTGGAAAAGTTTCGTCTTAACCACTCAAAATGTTCCAGCCCCCGG
ACAATTGCGAATGCTTGGCTTATTCACCACAAAATTAAGAAGTCTTTGCC
TGAGTTTCAAAATGAGCGGACATATAGGATAAAATACTCACTCCTGTCCA
TTTGATTTACGAGTATTATTAGGAGTCTTTGATGGTCCGGGGCACGTTGA
CTACACGAGCTCATTCTGGAACTCAGGCGAATACTTTTCAATTTTCGTGG
CGAATAAGCCAAGTATTCGTATTTGTCTTGGGGTGAAATGTTCGTATTCT
TCCGCAAGGTGCGAAACTCGATATACTTGACAGAATTCCAAACATGCGAA
GACAAGACACAAAAAAAGATCATGGGGTAATTTAAGATCGTTCATGTAGG
TATTTTTGTACAAAAAAAGAGTACAGGTTGTAGATACCAGCCTTAGTAAT
TCCGGTACGCCTTACCGTCTGTACAAGAACTGACGGTCTTGTCTTCCTCG
GGTCGTTGTCCAACCCTACACTCGTCCGGTTTCTGTCATATTCTTGGACA
AAGTGGACGCCCCGCACTCTCCCTGTCCGACACTGTGTCCAAAGCATGTC
CAAACCTACGGAACATGTGCCATGCTGCGTGCACCCAAAGAAGAGAAAAT
ATCTATCCTGTTGCTCCCTCGTATCAACAAGTAGGAGACGAGTAGGATAA
TGCAGACCCATTATCCGCGGTTATTTATATACTTGCAGGTATATCCTTTT
TCATCGGAACAGGGGAAGTGCTATACCTTGGAGTCACAGGAAAAAACAAC
GATTGCCACCATGACCCCCGTCACCTATTTGCTTACCTAGCGTGGAATAC
CCTTGAAAATGTAACGACCGTTGTTGTGCAGGCAGTGCCACGTATATATA
TATATATATAATTAAATACAGTAACCTGAGTATACTGCACTGTACTACAT
ACATCGCAAAAACACTAAAACACTGACCATGTCACACCGTACCATGAACA
TGAAATAATGACTTAAAAAGGGCCCAACAAAGCCCCTGACAAACAGGCAA
GTCCTCGGCTTACAACCCGAGAGGTAAGGCCGGAACAGGTAAAACGCGCA
CGAGGTGCTGAAGATTCGGATGACCGGCTGAAAACAACAGTTCGAAGTTA
GCTTACAACGCTGCACGAACCAGGTGTAAACTTTTGCGTCGTTTTTTACG
TATTTCATACATGTAGCCCGCAGCAGCACCAACTACATCACAATCAACCA
TTCATTCGTTTCTCCTGCTCCTATTTAGGGCTATATATCTGCAGAGTTTG
CCAGTCAGTTATGCAATGGCTGCTGACGACTCAGCCAATTTAACGGTATA
CTGATGGCGAGCAACAAAAGTCACGAGCCGCGGTTAACACGAATCAAAAT
AGCCGCATTGGGCGGCTGAGCAGACGCTGTGGGAGACGCCGCCGGTGGCA
AAATAGTCAGGCATTTGGGGTTTATCCCTTTCTTGTTTTTGCCTCCGGCC
GGCGGCGTCTCTCTTCAAAGGGACCTTGTCAGAAAAATGACCCCAATAAT
GTACAATGTCTTTTTTGTAAAAGGAAGAGAGGCGTTATATGTTTATTTCA
CTATGACGTACGTGAAACCTAAATACAAGTATCCTGAAATCTCACTCACC
TAAATCTTCAAGATTCCTCAACCAGTATCAGTTGTCCTACTAGTAATGCT
ATCAGATTACTAGTATCTACTCTAGTGGTGCGATCTTTCGCGCAACCGTA
TCCAGCGAATCATCCTGCTCTCCGCCGACAGAGCGCACCAGCCAATGCCG
TATTTCCCACCCACTTCGCATTTGATTGACTGCCGGCACGCACACATGCA
CGCGCGCACGCTCGCATGTACAGGCGTCGCTGGGCTTGAAGCAGCCTGTG
GGCTCTGCGCCGGGTTCGCACGCAGCGTGGGAGGCGCGCATTCGGCGTTC
AACGGTTTCCCTGAAGGCACTGGGCAAGGCGCTGGGTGGTGTTGGTCTCC
CGTTGGGCAAGGCGAGGGTAAGCGAGAGATGGACCAATGACTGGACATGC
TTTCCAAGCGTTATGCTCTCCGGTTACTTATCTACAGATGCAAGTGGCCT
GCCATATGAAGATTTCCCACAAGAAGTTGTGCTTCTTAACTGTTGGCCCC
GTATTACAGTAGTGAATGTATCAATAATCCGTATACTATGTAATAATAGA
TAGTGACTATTATTAAATACGGTAAGGTAAGGTAAGGTAAGGTAAGGTGA
TGTAGTGATAACGGTTGTCGTTTCGGAATATATTTTTACAGTTTCTATTC
AAGTAACTCGAATCTTCATGCGAGCTCAGCGAGTCCGCGGGTCGAGGACA
AGCACGAACCGCACGGGGGTGTGGCTAGTCATGGTCACACTCTGCTAGGC
GCATAGTGCGCACGAGACACAACAAGTTCACATGGTTCGGGATTAGCAGA
AAAGATAATTGTCTTTGTCTTTACTTGCTGTAGAGATTTTCCCAAAGGGG
CTTTCGAAGGTATTTTCTTATCAATTGCATATGATATACCAAATGTACAA
TGTATAACTACAATCATAAAACAAAAGCCCACAAACCTGCAACAGATTAT
TTTTGCCTGGCAAATGATTGGAGGTATGCTATATATATATTTTTTCACGA
GTATCAAACTTATATTAACGGACACACACATTCACACGCGCGCGCGCGCA
CACACACACACACACACACACACACACACATAGACACGGCACGCCAGGTT
TTAAGTTGCCTGAACACTAAAACAGGGACCCTTAACGTACTTAGTCTTGA
AACATGGGCCTCGGTCTTCTACTGTACGCCCCCCCAGAGTACATGTACCC
CCCGACGAAACACCGACCACGGTGTATCTCAGTCAGAATCACCCCAAAAA
CCTCTGCACCAAACAATAATTATCAATCACAGGTGGCGGCTGTGGCTAAG
CTTGCCTGCAATGGAAAGCTCATCCCCCCGCCGCCCTGCCGCACACAACG
ACGCCTTCTGCGACGACCTGCCGCGGTCCTCCCCCCCGCCGCCGCCGCCG
CCGCCGCCGCTTCCACCACCACAACAACACCCCGCAACCGCGGCAACAAC
AATAGTGGTCATCGTAATAACAACAACGGAGACGAGGACGAGAGCAACAG
AAAGAACATTTACAGGAAGGTCACTACAAACGGTCACCTCTATCCCAACA
AAAACAACCAAGCAAATGACATCGACATTAGCACCATCAAAGGTATCGAT
GACGGAGACAGACGACGTGTCTCCTCCTGGGATCTCCGCACCTACCTGCT
CAAGCTTCGCGTGGAACCGAAAAGTCGAGAGGCACGGGATCAACGCCGGA
GGCGTTTCTTTGCTGGCGGGGGCGGCGGGGGACAGGGCTACAGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig668:10582..14226-

>mRNA_H-paniculata_contig668.14564.1 ID=mRNA_H-paniculata_contig668.14564.1|Name=mRNA_H-paniculata_contig668.14564.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1368bp|location=Sequence derived from alignment at H-paniculata_contig668:10582..14226- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCAGCAGGGCGTTGAAGAGGATGAGGCGTTGTTGAGGAGGGTGACGGG
GCAGGCTGACCTGTACAATCGTTTGCTGGCGCAGCAGGGCGTTGAAGAGG
ATGAGGCGTTGTTGAGGAGGGTGACGGGGCAGGCTGACCTGTACAATCGT
TTGCTGGCGTCGCTGGGCTTGAAGCAGCCTGTGGGCTCTGCGCCGGGTTC
GCACGCAGCGTGGGAGGCGCGCATTCGGCGTTCAACGGTTTCCCTGAAGG
CACTGGGCAAGGCGCTGGGTGGTGTTGGTCTCCCGTTGGGCAAGGCGAGG
GCGTCGCTGGGCTTGAAGCAGCCTGTGGGCTCTGCGCCGGGTTCGCACGC
AGCGTGGGAGGCGCGCATTCGGCGTTCAACGGTTTCCCTGAAGGCACTGG
GCAAGGCGCTGGGTGGTGTTGGTCTCCCGTTGGGCAAGGCGAGGGTGGCG
GCTGTGGCTAAGCTTGCCTGCAATGGAAAGCTCATCCCCCCGCCGCCCTG
CCGCACACAACGACGCCTTCTGCGACGACCTGCCGCGGTCCTCCCCCCCG
CCGCCGCCGCCGCCGCCGCCGCTTCCACCACCACAACAACACCCCGCAAC
CGCGGCAACAACAATAGTGGTCATCGTAATAACAACAACGGAGACGAGGA
CGAGAGCAACAGAAAGAACATTTACAGGAAGGTCACTACAAACGGTCACC
TCTATCCCAACAAAAACAACCAAGCAAATGACATCGACATTAGCACCATC
AAAGGTATCGATGACGGAGACAGACGACGTGTCTCCTCCTGGGATCTCCG
CACCTACCTGCTCAAGCTTCGCGTGGAACCGAAAAGTCGAGAGGCACGGG
ATCAACGCCGGAGGCGTTTCTTTGCTGGCGGGGGCGGCGGGGGACAGGGC
TACAGCGTGGCGGCTGTGGCTAAGCTTGCCTGCAATGGAAAGCTCATCCC
CCCGCCGCCCTGCCGCACACAACGACGCCTTCTGCGACGACCTGCCGCGG
TCCTCCCCCCCGCCGCCGCCGCCGCCGCCGCCGCTTCCACCACCACAACA
ACACCCCGCAACCGCGGCAACAACAATAGTGGTCATCGTAATAACAACAA
CGGAGACGAGGACGAGAGCAACAGAAAGAACATTTACAGGAAGGTCACTA
CAAACGGTCACCTCTATCCCAACAAAAACAACCAAGCAAATGACATCGAC
ATTAGCACCATCAAAGGTATCGATGACGGAGACAGACGACGTGTCTCCTC
CTGGGATCTCCGCACCTACCTGCTCAAGCTTCGCGTGGAACCGAAAAGTC
GAGAGGCACGGGATCAACGCCGGAGGCGTTTCTTTGCTGGCGGGGGCGGC
GGGGGACAGGGCTACAGC
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