mRNA_H-paniculata_contig6679.14563.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6679.14563.1
Unique NamemRNA_H-paniculata_contig6679.14563.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6679.14563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6679contigH-paniculata_contig6679:6357..6879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size525
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930789.6017983-CDS-H-paniculata_contig6679:6356..66831622930789.6017983-CDS-H-paniculata_contig6679:6356..6683Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6679 6357..6683 +
1691481453.1068397-CDS-H-paniculata_contig6679:6356..66831691481453.1068397-CDS-H-paniculata_contig6679:6356..6683Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6679 6357..6683 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930789.6191604-UTR-H-paniculata_contig6679:6683..68791622930789.6191604-UTR-H-paniculata_contig6679:6683..6879Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6679 6684..6879 +
1691481453.1176693-UTR-H-paniculata_contig6679:6683..68791691481453.1176693-UTR-H-paniculata_contig6679:6683..6879Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6679 6684..6879 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6679.14563.1prot_H-paniculata_contig6679.14563.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6679 6357..6683 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6679.14563.1

>prot_H-paniculata_contig6679.14563.1 ID=prot_H-paniculata_contig6679.14563.1|Name=mRNA_H-paniculata_contig6679.14563.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
SVGQRGDVGHGACEVFRRGRRGLLYCNCHSLARYGRGLQFLLKVPGLSHH
TALYGRRLSRPTVVSAAEVVITTRRDVFVSGRGGVEAGRWVPPADDYRRE
VEERVVRS*
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mRNA from alignment at H-paniculata_contig6679:6357..6879+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6679.14563.1 ID=mRNA_H-paniculata_contig6679.14563.1|Name=mRNA_H-paniculata_contig6679.14563.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=523bp|location=Sequence derived from alignment at H-paniculata_contig6679:6357..6879+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGTAGGCCAACGAGGAGACGTAGGCCACGGTGCGTGCGAAGTATTTCG
GCGGGGAAGACGGGGCCTCTTATACTGTAACTGTCACAGCCTTGCTCGGT
ACGGGCGTGGGCTACAATTTCTCCTCAAGGTACCTGGACTGTCGCATCAT
ACTGCTCTGTACGGGCGTAGACTGTCACGCCCTACTGTTGTGTCGGCGGC
TGAGGTGGTCATAACAACTAGAAGGGACGTATTTGTCTCCGGGAGAGGCG
GCGTGGAGGCCGGGCGATGGGTACCACCTGCAGACGACTATAGACGTGAA
GTCGAGGAACGCGTTGTCCGCAGCTGAAGATGAAAGCCTTTGTTTTTCCC
ACCTTCCGTGGCTCCTTAACATGCCGAAAGACAACGAGAGCGTTTCGGAC
CCACAATAGCTTCTTATAGACGCACCCGTTAGTGTTAGGCTGCTCCAATA
TTTTCAACACGATCAGGAGAGTGGCCGCTCTCGACAAGTTGCGATATGAG
TCCCAGCGCTTACGCCATTTGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig6679:6357..6879+

>mRNA_H-paniculata_contig6679.14563.1 ID=mRNA_H-paniculata_contig6679.14563.1|Name=mRNA_H-paniculata_contig6679.14563.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig6679:6357..6879+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGTAGGCCAACGAGGAGACGTAGGCCACGGTGCGTGCGAAGTATTTCG
GCGGGGAAGACGGGGCCTCTTATACTGTAACTGTCACAGCCTTGCTCGGT
ACGGGCGTGGGCTACAATTTCTCCTCAAGGTACCTGGACTGTCGCATCAT
ACTGCTCTGTACGGGCGTAGACTGTCACGCCCTACTGTTGTGTCGGCGGC
TGAGGTGGTCATAACAACTAGAAGGGACGTATTTGTCTCCGGGAGAGGCG
GCGTGGAGGCCGGGCGATGGGTACCACCTGCAGACGACTATAGACGTGAA
GTCGAGGAACGCGTTGTCCGCAGCTGAAGCGTAGGCCAACGAGGAGACGT
AGGCCACGGTGCGTGCGAAGTATTTCGGCGGGGAAGACGGGGCCTCTTAT
ACTGTAACTGTCACAGCCTTGCTCGGTACGGGCGTGGGCTACAATTTCTC
CTCAAGGTACCTGGACTGTCGCATCATACTGCTCTGTACGGGCGTAGACT
GTCACGCCCTACTGTTGTGTCGGCGGCTGAGGTGGTCATAACAACTAGAA
GGGACGTATTTGTCTCCGGGAGAGGCGGCGTGGAGGCCGGGCGATGGGTA
CCACCTGCAGACGACTATAGACGTGAAGTCGAGGAACGCGTTGTCCGCAG
CTGA
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