mRNA_H-paniculata_contig6675.14560.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6675.14560.1
Unique NamemRNA_H-paniculata_contig6675.14560.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig6675.14560.1 vs. uniprot
Match: D8LEJ1_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ1_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 2.590e-45
Identity = 81/129 (62.79%), Postives = 97/129 (75.19%), Query Frame = 1 
Query:  703 IDAECIRSDPSPSFYGVTVHFPFETPMQPQRMLMQRMIAAFKDKKHALCESPTGTGKSVALLCAALAWQRHQLVKTGKAPQIIYGARVHTQLAQISAELKKVPYKATAITLGSRARLCINPLIVGETRA 1089
            +DA     DP  ++YG+ V FPFETPM PQ  +MQR+IAA K K+HAL ESPTGTGKS A+LCA+LAWQR +L +TGKAPQI YGAR HTQL Q+   +K  PY  T  TLGSRARLCINP++VG+  A
Sbjct:    1 MDASRQLGDPPKNYYGIKVEFPFETPMVPQDQMMQRIIAALKSKRHALLESPTGTGKSAAMLCASLAWQRDELFRTGKAPQIFYGARTHTQLEQMVRVVKSSPYCPTMATLGSRARLCINPMVVGDGAA 129
[Close]
BLAST of mRNA_H-paniculata_contig6675.14560.1 vs. uniprot
Match: A0A812QM34_SYMPI (Rtel1 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812QM34_SYMPI)

HSP 1 Score: 119 bits (299), Expect = 2.350e-25
Identity = 57/108 (52.78%), Postives = 76/108 (70.37%), Query Frame = 1 
Query:  739 SFYGVTVHFPFETPMQPQRMLMQRMIAAFKDKKHALCESPTGTGKSVALLCAALAWQRHQLVKTGKAPQIIYGARVHTQLAQISAELKKVPYKATAITLGSR-ARLCI 1059
            +F G+ V FPFE P++PQR ++Q ++ A    KHA+ ESPTGTGK+ A+LCA LAWQRH++ KTG APQ++Y  R H Q+ Q   EL++ PY+     LGSR A LCI
Sbjct:  243 NFGGIEVLFPFEQPLEPQRAVIQNVLEALVLGKHAVLESPTGTGKTAAVLCACLAWQRHRMSKTGSAPQLMYATRTHAQVRQAIRELRRTPYRPITAVLGSRGAGLCI 350
[Close]
BLAST of mRNA_H-paniculata_contig6675.14560.1 vs. uniprot
Match: A0A1Q9DHK7_SYMMI (Regulator of telomere elongation helicase 1-like n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9DHK7_SYMMI)

HSP 1 Score: 118 bits (295), Expect = 7.320e-25
Identity = 67/154 (43.51%), Postives = 90/154 (58.44%), Query Frame = 1 
Query:  601 DVAMGAGSGXXXXXXXXXXXXGGGYGPCLSAPCDIDAECIRSDPSPSFYGVTVHFPFETPMQPQRMLMQRMIAAFKDKKHALCESPTGTGKSVALLCAALAWQRHQLVKTGKAPQIIYGARVHTQLAQISAELKKVPYKATAITLGSR-ARLCI 1059
            D+A+G G+G              G G     PC I     R     +F GV V FPFE P++PQR +++ ++ A    KHA+ ESPTGTGK+ A+LCA +AWQRH++ KTG APQ+++  R H Q+ Q   ELK+ PY+     LGSR A LCI
Sbjct:   99 DLALGTGAGSIS-----------GPGMISGEPCPIVQAHARF--KLNFGGVEVLFPFEQPLEPQRAVIRSVLEALTLGKHAVLESPTGTGKTAAVLCACIAWQRHRMRKTGSAPQVMFATRTHAQVRQAIRELKRTPYRPIMAVLGSREAGLCI 239
[Close]
BLAST of mRNA_H-paniculata_contig6675.14560.1 vs. uniprot
Match: A0A812ZFR4_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812ZFR4_9DINO)

HSP 1 Score: 118 bits (295), Expect = 7.590e-25
Identity = 67/154 (43.51%), Postives = 90/154 (58.44%), Query Frame = 1 
Query:  601 DVAMGAGSGXXXXXXXXXXXXGGGYGPCLSAPCDIDAECIRSDPSPSFYGVTVHFPFETPMQPQRMLMQRMIAAFKDKKHALCESPTGTGKSVALLCAALAWQRHQLVKTGKAPQIIYGARVHTQLAQISAELKKVPYKATAITLGSR-ARLCI 1059
            D+A+G G+G              G G     PC I     R     +F GV V FPFE P++PQR +++ ++ A    KHA+ ESPTGTGK+ A+LCA +AWQRH++ KTG APQ+++  R H Q+ Q   ELK+ PY+     LGSR A LCI
Sbjct:  100 DLAIGTGAGSIS-----------GPGMISGEPCPIVQAHARF--KLNFGGVEVLFPFEQPLEPQRAVIRNVLEALTLGKHAVLESPTGTGKTAAVLCACIAWQRHRMRKTGSAPQVMFATRTHAQVRQAIRELKRTPYRPIMAVLGSREAGLCI 240
[Close]
BLAST of mRNA_H-paniculata_contig6675.14560.1 vs. uniprot
Match: A0A7S2PA46_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PA46_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.600e-23
Identity = 55/122 (45.08%), Postives = 75/122 (61.48%), Query Frame = 1 
Query:  748 GVTVHFPFETPMQPQRMLMQRMIAAFKDKKHALCESPTGTGKSVALLCAALAWQRHQLVKTGKAPQ---IIYGARVHTQLAQISAELKKVPYKATAITLGSRARLCINPLIVGETRASRKGE 1104
            G+ + +P+ T M PQR +   +I A    KH + ESPTGTGKS A+LC+ LAWQRH   K+G+  +   IIY +R H+Q+AQ+   LK+ PY+     LGSR RLCI+  I  + R    GE
Sbjct:   64 GIKIGWPYPTVMSPQRQMAFHLIKALNSSKHVVLESPTGTGKSAAILCSVLAWQRHHWKKSGEKKEKVKIIYCSRTHSQVAQMVTSLKQTPYRPRMAILGSRERLCIHKSI--KPRGGGSGE 183
[Close]
BLAST of mRNA_H-paniculata_contig6675.14560.1 vs. uniprot
Match: A0A812U899_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812U899_9DINO)

HSP 1 Score: 112 bits (281), Expect = 4.650e-23
Identity = 56/107 (52.34%), Postives = 75/107 (70.09%), Query Frame = 1 
Query:  748 GVTVHFPFET-PMQPQRMLMQRMIAAFKDKKHALCESPTGTGKSVALLCAALAWQRHQLVKTGKAPQIIYGARVHTQLAQISAELKKVPYKATAITLGSR-ARLCIN 1062
            GV V FPFE  P++PQ  +++ ++ A    KHA+ ESPTGTGK+ A+LCA +AWQRH+++KTG APQ++Y  R H Q+ Q   ELK+ PY+     LGSR A LCIN
Sbjct:  123 GVEVLFPFEKGPLEPQHAVIRNVLEALVLGKHAVLESPTGTGKTAAVLCACIAWQRHRMMKTGCAPQLMYATRTHAQVRQAVRELKRTPYRPIMAVLGSREAGLCIN 229
[Close]
BLAST of mRNA_H-paniculata_contig6675.14560.1 vs. uniprot
Match: A0A0H5RA64_9EUKA (DNA helicase n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RA64_9EUKA)

HSP 1 Score: 111 bits (278), Expect = 9.890e-23
Identity = 56/110 (50.91%), Postives = 75/110 (68.18%), Query Frame = 1 
Query:  748 GVTVHFPFETPMQPQRMLMQRMIAAFKDKKHALCESPTGTGKSVALLCAALAWQ-----RHQLVKTGKAPQIIYGARVHTQLAQISAELKKVPYKATAITLGSRARLCIN 1062
            G+ VHFP E P   Q  ++++MI +FK KKHA+ ESPTGTGKS+ALLC A+A+Q     RHQ       P+I+  +R H+QL+ ++ ELKK+PY   A TLGSR  LC+N
Sbjct:   94 GIEVHFPLEKPFPTQIAIIEKMIESFKQKKHAIIESPTGTGKSLALLCGAVAFQCDSYRRHQDDPDVAIPRIVVASRTHSQLSAMATELKKLPYSTWATTLGSRRVLCLN 203
[Close]
BLAST of mRNA_H-paniculata_contig6675.14560.1 vs. uniprot
Match: A0A7S4SS98_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4SS98_9DINO)

HSP 1 Score: 108 bits (270), Expect = 1.300e-22
Identity = 56/110 (50.91%), Postives = 70/110 (63.64%), Query Frame = 1 
Query:  766 PFETPMQPQRMLMQRMIAAFKDKKHALCESPTGTGKSVALLCAALAWQRHQLVKTGKAPQIIYGARVHTQLAQISAELKKVPYKATAITLGSRARLCINPLIVGETRASR 1095
            PFE  + PQ  +M+R + A + ++ AL ESPTGTGKSVALL A LAWQR      G APQI+YG R H QLAQ+ AEL+K PY+     +GSR  LC+N  +    R  R
Sbjct:   84 PFEL-LPPQLAVMERSLRACERRQVALLESPTGTGKSVALLTATLAWQRRTFAAQGAAPQILYGVRTHAQLAQMVAELQKTPYRPRMAVIGSREHLCVNEAVRAAARRQR 192
[Close]
BLAST of mRNA_H-paniculata_contig6675.14560.1 vs. uniprot
Match: A0A813DPK9_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DPK9_POLGL)

HSP 1 Score: 110 bits (276), Expect = 2.110e-22
Identity = 57/111 (51.35%), Postives = 71/111 (63.96%), Query Frame = 1 
Query:  754 TVHFPFETPMQPQRMLMQRMIAAFKDKKHALCESPTGTGKSVALLCAALAWQRHQLVKTGKAPQIIYGARVHTQLAQISAELKKVPYKATAITLGSRARLCINPLIVGETR 1086
            T+ FPF  PM PQ  L +R + A +    AL +SPTGTGKSVALLCAALAWQR    + G APQI+YG R H QL+Q+  EL+K PY+     +GSR  +CIN  +    R
Sbjct:  166 TLQFPFP-PMHPQVALAERAVHACETGGIALLQSPTGTGKSVALLCAALAWQRRCFAERGAAPQILYGVRTHAQLSQVVGELRKTPYRPRMAVIGSRDSMCINEDVKANAR 275
[Close]
BLAST of mRNA_H-paniculata_contig6675.14560.1 vs. uniprot
Match: A0A813DB55_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DB55_POLGL)

HSP 1 Score: 110 bits (276), Expect = 2.260e-22
Identity = 57/111 (51.35%), Postives = 71/111 (63.96%), Query Frame = 1 
Query:  754 TVHFPFETPMQPQRMLMQRMIAAFKDKKHALCESPTGTGKSVALLCAALAWQRHQLVKTGKAPQIIYGARVHTQLAQISAELKKVPYKATAITLGSRARLCINPLIVGETR 1086
            T+ FPF  PM PQ  L +R + A +    AL +SPTGTGKSVALLCAALAWQR    + G APQI+YG R H QL+Q+  EL+K PY+     +GSR  +CIN  +    R
Sbjct:  479 TLQFPFP-PMHPQVALAERAVHACETGGIALLQSPTGTGKSVALLCAALAWQRRCFAERGAAPQILYGVRTHAQLSQVVGELRKTPYRPRMAVIGSRDSMCINEDVKANAR 588
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6675.14560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEJ1_ECTSI2.590e-4562.79Helicase ATP-binding domain-containing protein n=1... [more]
A0A812QM34_SYMPI2.350e-2552.78Rtel1 protein n=1 Tax=Symbiodinium pilosum TaxID=2... [more]
A0A1Q9DHK7_SYMMI7.320e-2543.51Regulator of telomere elongation helicase 1-like n... [more]
A0A812ZFR4_9DINO7.590e-2543.51Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A7S2PA46_9STRA2.600e-2345.08Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A812U899_9DINO4.650e-2352.34Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A0H5RA64_9EUKA9.890e-2350.91DNA helicase n=1 Tax=Spongospora subterranea TaxID... [more]
A0A7S4SS98_9DINO1.300e-2250.91Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A813DPK9_POLGL2.110e-2251.35Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A813DB55_POLGL2.260e-2251.35Hypothetical protein n=1 Tax=Polarella glacialis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6675contigH-paniculata_contig6675:1634..11221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.2
Seed ortholog evalue2e-39
Seed eggNOG ortholog2880.D8LEJ1
KEGG koko:K15362
KEGG Pathwayko03440,ko03460,map03440,map03460
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG1199@1,KOG1132@2759
EC3.6.4.12
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons5
Model size1262
Cds size1260
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6675.14560.1prot_H-paniculata_contig6675.14560.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6675 1634..11221 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930789.2658725-CDS-H-paniculata_contig6675:1633..18501622930789.2658725-CDS-H-paniculata_contig6675:1633..1850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6675 1634..1850 -
1691481452.9607239-CDS-H-paniculata_contig6675:1633..18501691481452.9607239-CDS-H-paniculata_contig6675:1633..1850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6675 1634..1850 -
1622930789.2870924-CDS-H-paniculata_contig6675:2122..22561622930789.2870924-CDS-H-paniculata_contig6675:2122..2256Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6675 2123..2256 -
1691481452.9755466-CDS-H-paniculata_contig6675:2122..22561691481452.9755466-CDS-H-paniculata_contig6675:2122..2256Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6675 2123..2256 -
1622930789.3037066-CDS-H-paniculata_contig6675:7072..71831622930789.3037066-CDS-H-paniculata_contig6675:7072..7183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6675 7073..7183 -
1691481452.986108-CDS-H-paniculata_contig6675:7072..71831691481452.986108-CDS-H-paniculata_contig6675:7072..7183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6675 7073..7183 -
1622930789.316127-CDS-H-paniculata_contig6675:9184..95021622930789.316127-CDS-H-paniculata_contig6675:9184..9502Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6675 9185..9502 -
1691481452.9954326-CDS-H-paniculata_contig6675:9184..95021691481452.9954326-CDS-H-paniculata_contig6675:9184..9502Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6675 9185..9502 -
1622930789.3310227-CDS-H-paniculata_contig6675:10741..112211622930789.3310227-CDS-H-paniculata_contig6675:10741..11221Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6675 10742..11221 -
1691481453.00531-CDS-H-paniculata_contig6675:10741..112211691481453.00531-CDS-H-paniculata_contig6675:10741..11221Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6675 10742..11221 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6675.14560.1

>prot_H-paniculata_contig6675.14560.1 ID=prot_H-paniculata_contig6675.14560.1|Name=mRNA_H-paniculata_contig6675.14560.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=420bp
NAQNSRDSQQQQQRVVTMHTASQASPLNIANVRPDSAGAGVVKCGSNQAA
SISPPPEIRSPVPVEGASVGEAAHRGASSAVDGLMAPREEQRSSVAGGAG
TEGHVGVFATLSSSDFAPSPLFSNAQPAVAQPSPKGFSMKGAATAPWERH
TRGFGTRILRRMGFDGRTGARETEFVNTFADKARAGQVTRGGERGGIGRI
DVAMGAGSGGGGSGGGGGGRRGGGYGPCLSAPCDIDAECIRSDPSPSFYG
VTVHFPFETPMQPQRMLMQRMIAAFKDKKHALCESPTGTGKSVALLCAAL
AWQRHQLVKTGKAPQIIYGARVHTQLAQISAELKKVPYKATAITLGSRAR
LCINPLIVGETRASRKGEMDDDDEDDNLVVDGGLGGESTTEYRSGGAAAG
RHARSGGVMGSRRRPRYKN*
back to top

mRNA from alignment at H-paniculata_contig6675:1634..11221-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6675.14560.1 ID=mRNA_H-paniculata_contig6675.14560.1|Name=mRNA_H-paniculata_contig6675.14560.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9588bp|location=Sequence derived from alignment at H-paniculata_contig6675:1634..11221- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGCACAAAACTCAAGAGACTCACAGCAACAGCAACAGCGGGTCGTGAC
GATGCACACAGCCTCCCAAGCCTCACCACTAAACATCGCTAACGTCAGGC
CTGATTCAGCAGGTGCTGGGGTGGTCAAATGCGGCAGTAACCAAGCCGCT
TCGATTTCCCCACCCCCCGAAATCAGGTCACCAGTGCCTGTCGAAGGAGC
CTCTGTCGGTGAAGCTGCTCATAGGGGGGCCTCGAGCGCAGTCGATGGAT
TGATGGCGCCGCGGGAAGAGCAACGATCGTCTGTAGCTGGCGGGGCGGGT
ACCGAGGGACACGTCGGTGTCTTTGCTACTCTAAGTTCGAGCGATTTTGC
TCCCTCACCTTTGTTCTCGAATGCACAGCCGGCAGTCGCGCAGCCGTCGC
CGAAGGGCTTCTCGATGAAGGGGGCGGCTACAGCTCCGTGGGAGCGGCAC
ACACGGGGGTTTGGCACGCGGATACTGAGGGTAAGTGCGAGCGGGAAAAA
CGGGGCCGAGAAAGATGGGGAAAGGAGGGGTTAGAGTGAAAAACTCGCAA
AAATGGACGTCCAATACATATACCTCTGTCCCATAAGTCTGGCTTATAAC
GGTATTTTGTAAATATCTTTCGCAGTTTGAGGTTTCTTAAGAAATAAAGC
ATATCATTCGAAAGCCGACACGTTCAGCTTGCATGTAGATATCTTCAAAA
TATTTTTTGAATTCGAAATGGGAAAACCGGACATCTCAACACATTTGTAT
TTCTCGGAAATGGCAGATTTTGCGAAAATAGCTGAATTGGCGGAAATCGG
CTGAAAACCATGGTTTTCCATTGTTTCGTGAATCATACCAAACTGACCGA
TTTACCAAGCTAAACCTGGCAGGAAGAGACGACGGATGGAACATCAAGCT
CGTAACGCGGCCGGCGCAATCTCTCGATCTCAATATCAACGATTTGGGGT
TTTTCGCATCTCTACGTGGAGAGAGCGCTACCGTACGTTAGACGCCCTTA
TACAGGAGGTCAAGAGCATGTATATATCTCCTTGGGACTTTATCAACCAA
TATTGATTTTCAGCCGATTTCGGTCGATTCGGCTGTTTTTCCAAAAACAA
CCATTTCCGAAAAAAAAAACATGTTGAGGTACCCCGGTTCTCAACCAATT
CGAATTCAGTCGTCGAGGGAAGACGTCATTCTATGATGTTCTCCGCGTAG
AGTTTTCGTAAGGTTGATAAGCTTCTGTGTTGCGCACTCTAGGATTGTGC
CGTCATATCGGTCGAAACATACGAACCGGGTTCGCAAGAGAGCTGCATCG
CCACACATGCTGTTCCTTAGTTTGTCCCAGATTTCAGTTACCCGATCCCC
CCCCCCCCCCCCCCCCCATGTGATGAGGCGTTCGAATCCTGGGATTGCGA
AACGAAGATGAAGGAATGACCTAAACGACGGTAAAACATTTCGGGGCACG
TTTCGCGCGACGTCTACTAGAGAAAAAAACGATTAGCCATGTCATCGGAG
ACCGCTCTGATAGAAATTAAGCTCCTTCCTCTCGAGGACGCGCGGTCAAT
GATCTAACAACTACGGCATGCAAACCATGAGTACCCCCCCCCCCTCCCCC
CCCCCTTCCCTCCCCTTATGGATGGCGCTAAATCCACGACTCCTCCGCAG
TAGTCCCCATATCCCTTCTCACCCCCCCAAATTCCACCGCCGCTCCCCAT
CTCAAATCGCTCGCCATAGAGAATGGGCTTCGACGGACGAACGGGGGCGC
GCGAAACCGAGTTTGTCAATACCTTCGCCGACAAAGCAAGAGCAGGGCAG
GTGACCCGCGGCGGGGAACGCGGAGGTATTGGTCGCATTGACGTCGCCAT
GGGAGCCGGTAGCGGTGGTGGCGGCAGTGGCGGCGGTGGGGGGGGGCGGA
GGGGGGGCGGTTATGGTCCATGCCTCTCGGCACCGTGCGACATCGATGCT
GAGTGCATAAGAAGCGACCCTTCCCCTTCGTTCTACGGAGTCACGGTGCA
CTTTCCGTTCGAGACGCCAATGCAGCCGCAGCGGATGGTACGTGTGAATT
TTTTATATCTTGTCGGCAATGAATGGTGGATATTGATCACTCAGGAATTT
TGTTTTTGTTGTTGTTGTTGTTGTAAAAGTGTTGGTTTTTTTACCGTCGT
TTTACTTTTTTTCACTATATGCTGGTCGATAGATAAATAGATCGATAGCC
CGAGCTAGTGGCTCCTCTTCCTTCATGTGCAGGGTATTGTTGAACAGGTG
AAGGTTGCAATTCTGAGAGATAATTTTAGCCTCGTATGTTGTTTATGTTG
TGTGTGTGTGTGTAGTTTGTTGTTAGATGTGTCGTACCCTTTATCCTCAT
TGATATTTATCTGCACACTAATTAGGGGGGGTATGTTTGTACGACACGTC
GTAAAGAAGTTGTATACAAGAAACATGTACGCCCTCCAAATGAATTATTT
TCGCATCGTCTACTGATTTGCGCCGCTATTTAGGCCATTTTTATCTGGAG
AAAAAAGCGATTCTGGGCAAATTCCTCAATAATCTGTTCTGGCTGGAGGG
CCTGTGATTGGCGGGAAAATTGGCCTGGACGCTGGTTGTTGCTCATCGCG
CTTTTTCCATGCCAAAAAATCTATTTCACAACAATTTGGTGATAAAATGA
AGAAGACTTCTACCCCGCGTACAAATACGAATACTTGCAAATGTTTTTCA
CAAAAAACTGGAAATATTCGCCTGAATTTCCGAATAAGCTGGTATGTTTT
ATGTGCCCCGGACCATTCACGACTGCTAATAACACTCGTGAATCGAATGT
ACAGGGTTGGGTACTTTATTCTATGTGTCCGCTCATTCTGAAACTCAGGC
GAATACGTTCAGTTTTTTTGTGAAAATCATTTGCAAGTATTCGTATTTGT
ACAGGGGGTGAAGACTTTTCTAGCTAGGTTTGGTCTTTGGCGGGCACAGA
ATTTATTCTGTAGGGGGAAAAGATAGTGGCTGAAAGGCGTCGAAAGTGTT
CACGGTTGCCCTCAAGCGATCAAAGGCAGCCAAAGGCTGCGAATTTTAAC
CGGGGACAAAGGAGCGCAGCGCGGTGATTGTAGCCGTCACGTCTCCTGGG
TGTAACAAAACGTAGTCGGGGCCGTTGCCCTTTATCCACTGAGCTCCAAA
TACTTGATTTGGGTGGAATCAGTCAAGAATGGAACAAGGGCGGATGTGTT
TCGTGGGAAAATGGCCAAGACAGACACGGCCAAAAGCGGCACTTTTTGGA
AATTGCAACTGCACACGAACTGCCGTACTTCCCCCAAGACATGCTGCAAT
TCCGTCAAACCAAGCCTGGTGCGTGCAGCTGAGTAGGGCCTATCGTGCAC
GCTAGTGCGCGTGCACTCTGTCTGTCTGTCTGTCTGTTTGTGCGTGTTTT
CTGCGTGTTGCTGTGAAACTCTCTGTAGGTGGTGTTTCTCAGTCCATTCT
TCTTGTGAATCCTCATGGACTCTGCTGACCTCAACCATTGGCAACAGTCA
GTACAAACCAGGACATCTCCGGCACCCAAATCTAATTTTTGATTGGACAC
AAGAACCGTATCTGGACCGATTACTTTGGTCAGAATCGATTTCGAAAGAA
TCGAGTTTTTTCGTCCAGATAAAATATGGCTTTCCGCGCAGTTCCAAACT
TCCGGTGCTGTTATCCGTGCAACCAGAGCGCTACACAACGCTGCGGTCAG
TACTGCGCACTGAAGACAAACATGTTGCCCGCCCAAAATATAATTTTATA
GAACGTCGCCACTGTTGTTGCGTAAAGCAGACTATTTTTGCCTGCCGGGA
AAAATGCATAGTGAAGAAATCTCCCCCCCCCTCCCCCTCTCCACATTTGG
CAACAACGCAGGAAAGAGCGATTGGCTATCGGAAATCGCTCTGACAGGAA
CAAAGCTTCGTCCTCCCAGAAACTCGTGTTTAATGGTCAAACGACTCCGG
CATGTAAAACATGAGTACGCCCCCCTCCCCCCCTCCTGATCCCTGGCCCC
GACCCTCTTGACGCGACAACCCCGATTCCACACAACAGCTGATGCAACGC
ATGATCGCCGCTTTTAAGGACAAGAAGCACGCATTGTGTGAGTCTCCCAC
GGGCACTGGGAAGTCCGTGGCGCTGCTCTGCGCCGCCCTTGCTTGGCAGG
TGAGGGTTGGTGAGAAGATTAACGATTACCATCATACGGCAGAATTCCTG
GGAACTTTTCGTTCTTTGGAGTGGTTTTTACTCTCCTGCTTTTTTTTTTT
TTTTTCATTTTTTTTCTGCGGCTCGTTCGGTTTCTAAGCATGTTTTTCCA
CTAAAAAATTTGGGGGACTAGGTTGGTTTTCTTTTTGTGTCATATTGTGG
AGAGCACATTCCTGACGTTCCTGGGATTCCTGAACCCGGTTCCCTACACA
ATAAGCCGGAGGCGTTTCGATCCATTTTAGGACCATCTCTCTGGCTGGCT
CGACCCCTGGGGATCATTCCTGCCTGGGAGAGGTCTCTCACAACAGATCA
AATGGTGTGTGCTCCACCGTACACCCCTGAACCTAGACCGAAAATAGAGC
AGGGCACCATGCCCATGGAAGTCAGTCTACCGTGGGAGCGTGGTGTTTTC
ATTGGCATCGCCGGTTTTTGACCCGGGGTACTGTGTGATCTCAAACAGGT
GACGTTTTTTTAAATCCCACAGAGACGAGGCAATGATAGGTAGATCTGTA
TGGCCTTCAAACCGTAAATACATGATCGGCGCGCACGAGCGTCAAGGGGG
GGGACAGCGCGCTCGCTGTACTCGTTCCGGGCCGTACTTTGCCACCGCAG
CTACTGGCAGCACCACGCAGCACCGCCAACATCACAACCGACCTCAACGT
GACCCCAACACAACGGTCAAAAGCGTGTTGTGGTCTCAGCGACCAGCGGA
TTTTTGCGGAGAATTGGCGATATTCACAGGTGATACTTCCGGTGATCGGC
GGGAAATCATGCTGGGGTGGCAGCGTAGACGACTCAATCGCGTGAAATGG
CCAGTGAGATCGTTCCGGCAGTAGGGTTGCATGCAACCTCGTGCTGGACG
TAGTTAGTGGTGTTCAAATTATTGAAGGTTTTTGAGTTGGTGTTAATTCG
AGACATCGAATAGCGGTTGACAAACTGCCTTACCGTGCCAATCCCCGAGC
TCAAGCCGTTATTGACCGATGCATTGAAAAAATGGAGTCGCATGGCATCA
TAGACCCGCGCAAAAGCTCGTTTAGGTTATCTGTGACAGTAGTGATTGGA
AGTGATGGGTGCACAAGATTCGTTGTAGACCATTGCGCGACCGTTGACAA
GCATTTGATGCGGGAAAAGTGTCCGATACCGGATATTTCATGTCACACAG
ATAGGCTTGGTGGCGCGTAATACGTTAATAGTGTTTTCCATCTTGAGGCA
GCTCATCACCACATCCCTGTAGCAGGAAGCGAAGTGGAGAAGACTGCTGT
TGTCACGCAAAAAGGGAATTCGTTTTTAAACAAATGCCATTTGGCATTGT
GTGGGCCCCGTGGCTATTTTGAAGAACAGATAAAAGCATCTTGCTCCCCC
GAAAATTGTTTGCATGAAATGAACCCTCCGCACACGATGGTCGATCTCAT
CCAACAGCTGCAAACGTACCCAACAGCCACTATAAATCACGCCCCGTCCG
CGTTCGGACAAAGCTGCAAATCTCTTTATCCCCGAATGGTCATGGTGAGT
TTCCGGAGGAAACAGCTGACCCCAACATTTGGTAATTCCGACAGCGCAGC
GGATTGTTGGTTTATCTTGATGATTTGGTCACCTGTTGCACTACATGGGA
ATCATATGTGCATTTGCTGGAGGATATATTTAAATGCTCTCCAAGCAGCT
GGTCTGACTTTGAAACCATCTTGAACAAAGCGGCAGAGACCGTAGCGGTA
GTAATAAATGGAATAGTTGTCGTTATCTTTCCTCCTCCGGAAATCGTACA
TTCGGACCACGGGAAGACAATCCGAAAATCAAGTGGTGTTGCAGCTACAA
GAAGGTTTCGGGATAGTACGAAACGAAAACCACATCTAATCACCCACAAG
GAGAATTCCGCATCAGAACGAATTCACTTGAAAATACATACTACGTTGGC
GATGTACAGCAGTGTTGCTCAGGACAACTGGGCATCCCTCCTGCTAGTCT
TCCAGTTGGCCCACAACACGGCGTTTAGTACCACATAGCACGGGACAGAT
TTGTTTGCCCGTGGGTATTATTTTTGGCATTCGCCGCCAGGGGCGAACGA
CCAGGGGCGAACGATCGACACACTAAGGATTTTTGAAAAAAAATCGAGAG
CATGTACAGCTAGCTTTTGAGGTAGCTCTCCGATTTGGCGGAGCAGACGG
ATAAACAGGCCGAGAGTAAAAACAACATAATGAAGTACCCCATTTTTAAG
AGAGGGCCTCAATTGCTAGTGTACAGGCCTTACCAACACTTCGAGGGGCC
GAATCCAAACTTACTGAAGCCATGGCGCAGATCGTGTATGATCTGTTCTC
AGCTTTCTCCGGTGGTATATCGGCTGAGACAGTCAGGTGATTCGAGAGAA
ATATCGATCCACATAGCCCACCTGAAACTCTATCATAATCGGAAACTGCC
GCCGGAGCCTGATTTTGACAAAGTTAAGAGATGCGTTTTTGGGCAAGTCT
ATACCTTTACCCGTCCTGGATCGCCCGAAGCTGACTCAACCACCTGTCGG
GTCATTGAAGATTGGCAGTATAGTGAGACACCAACGAGGACAAGAAAGAA
GTAGTCCTCACAACTATGTATCGTCCGCGGCTAGCAGGTTACGGGCTGAC
CGATGATCTATTGTGTCGCGCTTATGAAGATCCCCAGCATCAAGAGATGA
TCGTAACCTACCGAGCCGTGAATGGACTCCATGTAACCGCGTGTCCTCCC
TCGAAATCAAAATCGAAGTCGAATGAGGAGTCGAATTCAAGTTTTACGAA
GATGTCGAAACCCGAAAAGAGTTGAGTTCCAGACCTGCATAATTCTTTGG
CGACGGACAGGTAAGACTGTTTTACATGTTACCTATTATAGCTGCAGTGT
GGAATGACTGCGATCACTCTGCACCTTGGTTTTACCATGTTCTGTACAAG
CTGAACGCATGATGGTAAGCCTTATTATTATGATAGCAGTTAAGAGTGTT
GGCAGTTATAGCTGACACTACAGCTTGCATGGACCACCTTCTGGGTGTGT
GGAGTACTCTATTTTGGCGTATATAACGATGATTGAAGGCTATCGCCGTT
CCACATGGTGGATGCAACAGTGGGTGAAGGCTATCACCGTTCTACTTCTT
ATAGACCCGAGACAGGGCTCGTCCCTTGTGCTGTTCCCCTGGGGAGGCCA
GAGCTGGAACCACCAGCCACGCAAGCGCACGGGATAACTCGAGTCAGGGC
TTACCTCGACGCCGTTATATTTTTTTGGACGCACCGCATGGGCCAGTGCG
GTGTTCTCAAAATCGTAAAAAGGAGAAGCAAACCAACCCCCTCTCCCCCC
TCCTTGTGAAGAAGTTCCGAATGTCAAGCATAAATATCTCTGTTGCGAGG
GTGCAGACATTTTTCAAATGCAATTGTTTTCTCGAGGACGGAGCTAACAT
ATGCGGTCGAAAGAGCCCGTCGATCGACAGATAAATCTCTTCTGTAGGGT
CCCTTCTTTTTTTTGTCCCAACGATACTATACACCTTGCGTTGTCAGTAC
GACAATGCCGTCTAGTAGTACTCGAGATGATCGCATTTAACCCTTGGAGG
AACTTGACTTCACGACGCACAAGAGATGGATTTGCTAACGACCAGTTTTG
AATAATGGCGAATACGTTGACATGAGGCATGCCTTGACCAGCTATCTCTG
AACAGCTCGTTGGAGAATCTCTGATGTATATCTAATTTTTTTATCGTTTG
GGTTGAGGAAATTTATGTTGAATTTATTGTAGAGTCAGAACAAGAAAAGA
GCTCTGGTAGACCGCTGGTTACTGCATCTCAGATGGAAAACAGGGAATTG
TCTATTTGCCCTTTGTATTTTTTGTCTTGGATTTAGTATAGAGCAAGAAC
GAGCAAACGCCGGCTATTTTCGCAACGGCCAAATCATAAGCAAGCTCTCT
ACACTGCTAGCTGATTAGGGGGATCAAAAGTTCCTCAAGCATGAAGGATG
TTAGCACCCCCGGTGCGATTGCAGAGGATTTTACTGTACTCCGCTCTCCT
GTTAGTGATCGTATTTTTGACTGAGTAATGCATTTTCTCTCAGCATCGTT
AAACGATGTATCTCAATTCCCCCATTGTTGTTCATCCTCCTCCTCCTCCT
CCTCCTCCTCCTTCGACATTTGGTCGGTTTGCGTATTAAGTCTTAATCAA
CCACTCATCAGTAATAAAGTCACTTGAGCATAACCTCCAATTTTGATCTT
GTGGTTTTATTTGCATTGACATATTTTCTATTTGTATGTATACTGTATAG
TTGTACTCCAAAGTATGCTTTGTACCCATGTTCCAAAAATCGTATTTGTT
TATTCTTTGCTCCATGTTGTGTTGTCGATGTTGTCCTGTTTGTATTGTTG
AAGCTTTTTTCCTTCGGCAAGAGGCGTTACATGCTGTTGGTGTGTCGCTG
TTATGGTGTATTGTAACGGGAACGTATATTGTAGTATAGTTACTTTCTGC
TTCTCCTAGAAGTTCGGTACTTGCTCCCTCTGTAAGGTGCTATATTTTGT
GTGTTCAGTCATTTGTATCAAATTTTATTTTGCAGATTTCTTTTCTCGAG
TATCGAACAGTTGAACACCAATCGACGAACACGGTGGTAAAGTATATTTC
ATGTTTTACCTATGCACAATGCGGTAACAAGGTGAGAAACGAAGAGCGAT
GTGGGTGAAAGGGGGAGCAATCGCTTGTTCGTATGATGCAATGTTTGGCC
AAGTGAACCCCTCCCCTTCCCCATCTCGTTGCATCTGATCGCCGCCATTG
GCAAAACGCTCGCAGCGCCACCAACTGGTGAAAACCGGCAAGGCGCCGCA
GATAATCTACGGTGCCAGGGTGCACACCCAGCTGGCACAGATATCCGCTG
AGCTCAAGAAAGTGCCGTACAAAGCCACGGCAATCACCTTGGGATCAAGG
TTCGTGATCGCGTGCTTGCATCCATGCGGAAATAATACGTACAAGCTATA
TAGAAGTGAAGCTCTCGCCTATTTAGGCAAAAGCTCTGGAGTGACATGGC
AGCTTAAACTTTTTTCCCCTCGAGAACGAGAGGGCCACTCGGTTAATCAG
CTGTTGGTTCGCTGTATGCTCACTCGTTATTTTTATCTGGTTTTGTTCTT
TTAGCTCGTTTTGCCGCTCACTTTAATCGCTGATCGCCGCTCGTCCCGCA
TCCGTCCGTGGCCATTCCTAGAGCGCGTCTTTGTATTAATCCTCTGATCG
TTGGAGAGACCCGAGCGTCGCGCAAGGGGGAAATGGATGATGACGATGAA
GATGATAACCTAGTAGTGGACGGAGGTCTGGGGGGGGAATCTACCACGGA
GTATCGCAGCGGTGGTGCTGCCGCCGGGAGACACGCGAGATCAGGCGGGG
TGATGGGCTCTCGACGAAGACCAAGGTACAAAAACTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig6675:1634..11221-

>mRNA_H-paniculata_contig6675.14560.1 ID=mRNA_H-paniculata_contig6675.14560.1|Name=mRNA_H-paniculata_contig6675.14560.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2520bp|location=Sequence derived from alignment at H-paniculata_contig6675:1634..11221- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGCACAAAACTCAAGAGACTCACAGCAACAGCAACAGCGGGTCGTGAC
GATGCACACAGCCTCCCAAGCCTCACCACTAAACATCGCTAACGTCAGGC
CTGATTCAGCAGGTGCTGGGGTGGTCAAATGCGGCAGTAACCAAGCCGCT
TCGATTTCCCCACCCCCCGAAATCAGGTCACCAGTGCCTGTCGAAGGAGC
CTCTGTCGGTGAAGCTGCTCATAGGGGGGCCTCGAGCGCAGTCGATGGAT
TGATGGCGCCGCGGGAAGAGCAACGATCGTCTGTAGCTGGCGGGGCGGGT
ACCGAGGGACACGTCGGTGTCTTTGCTACTCTAAGTTCGAGCGATTTTGC
TCCCTCACCTTTGTTCTCGAATGCACAGCCGGCAGTCGCGCAGCCGTCGC
CGAAGGGCTTCTCGATGAAGGGGGCGGCTACAGCTCCGTGGGAGCGGCAC
ACACGGGGGTTTGGCACGCGGATACTGAGGAACGCACAAAACTCAAGAGA
CTCACAGCAACAGCAACAGCGGGTCGTGACGATGCACACAGCCTCCCAAG
CCTCACCACTAAACATCGCTAACGTCAGGCCTGATTCAGCAGGTGCTGGG
GTGGTCAAATGCGGCAGTAACCAAGCCGCTTCGATTTCCCCACCCCCCGA
AATCAGGTCACCAGTGCCTGTCGAAGGAGCCTCTGTCGGTGAAGCTGCTC
ATAGGGGGGCCTCGAGCGCAGTCGATGGATTGATGGCGCCGCGGGAAGAG
CAACGATCGTCTGTAGCTGGCGGGGCGGGTACCGAGGGACACGTCGGTGT
CTTTGCTACTCTAAGTTCGAGCGATTTTGCTCCCTCACCTTTGTTCTCGA
ATGCACAGCCGGCAGTCGCGCAGCCGTCGCCGAAGGGCTTCTCGATGAAG
GGGGCGGCTACAGCTCCGTGGGAGCGGCACACACGGGGGTTTGGCACGCG
GATACTGAGGAGAATGGGCTTCGACGGACGAACGGGGGCGCGCGAAACCG
AGTTTGTCAATACCTTCGCCGACAAAGCAAGAGCAGGGCAGGTGACCCGC
GGCGGGGAACGCGGAGGTATTGGTCGCATTGACGTCGCCATGGGAGCCGG
TAGCGGTGGTGGCGGCAGTGGCGGCGGTGGGGGGGGGCGGAGGGGGGGCG
GTTATGGTCCATGCCTCTCGGCACCGTGCGACATCGATGCTGAGTGCATA
AGAAGCGACCCTTCCCCTTCGTTCTACGGAGTCACGGTGCACTTTCCGTT
CGAGACGCCAATGCAGCCGCAGCGGATGAGAATGGGCTTCGACGGACGAA
CGGGGGCGCGCGAAACCGAGTTTGTCAATACCTTCGCCGACAAAGCAAGA
GCAGGGCAGGTGACCCGCGGCGGGGAACGCGGAGGTATTGGTCGCATTGA
CGTCGCCATGGGAGCCGGTAGCGGTGGTGGCGGCAGTGGCGGCGGTGGGG
GGGGGCGGAGGGGGGGCGGTTATGGTCCATGCCTCTCGGCACCGTGCGAC
ATCGATGCTGAGTGCATAAGAAGCGACCCTTCCCCTTCGTTCTACGGAGT
CACGGTGCACTTTCCGTTCGAGACGCCAATGCAGCCGCAGCGGATGCTGA
TGCAACGCATGATCGCCGCTTTTAAGGACAAGAAGCACGCATTGTGTGAG
TCTCCCACGGGCACTGGGAAGTCCGTGGCGCTGCTCTGCGCCGCCCTTGC
TTGGCAGCTGATGCAACGCATGATCGCCGCTTTTAAGGACAAGAAGCACG
CATTGTGTGAGTCTCCCACGGGCACTGGGAAGTCCGTGGCGCTGCTCTGC
GCCGCCCTTGCTTGGCAGCGCCACCAACTGGTGAAAACCGGCAAGGCGCC
GCAGATAATCTACGGTGCCAGGGTGCACACCCAGCTGGCACAGATATCCG
CTGAGCTCAAGAAAGTGCCGTACAAAGCCACGGCAATCACCTTGGGATCA
AGCGCCACCAACTGGTGAAAACCGGCAAGGCGCCGCAGATAATCTACGGT
GCCAGGGTGCACACCCAGCTGGCACAGATATCCGCTGAGCTCAAGAAAGT
GCCGTACAAAGCCACGGCAATCACCTTGGGATCAAGAGCGCGTCTTTGTA
TTAATCCTCTGATCGTTGGAGAGACCCGAGCGTCGCGCAAGGGGGAAATG
GATGATGACGATGAAGATGATAACCTAGTAGTGGACGGAGGTCTGGGGGG
GGAATCTACCACGGAGTATCGCAGCGGTGGTGCTGCCGCCGGGAGACACG
CGAGATCAGGCGGGGTGATGGGCTCTCGACGAAGACCAAGGTACAAAAAC
TAAAGCGCGTCTTTGTATTAATCCTCTGATCGTTGGAGAGACCCGAGCGT
CGCGCAAGGGGGAAATGGATGATGACGATGAAGATGATAACCTAGTAGTG
GACGGAGGTCTGGGGGGGGAATCTACCACGGAGTATCGCAGCGGTGGTGC
TGCCGCCGGGAGACACGCGAGATCAGGCGGGGTGATGGGCTCTCGACGAA
GACCAAGGTACAAAAACTAA
back to top