mRNA_H-paniculata_contig6674.14559.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6674.14559.1
Unique NamemRNA_H-paniculata_contig6674.14559.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6674.14559.1 vs. uniprot
Match: A0A6H5L675_9PHAE (Cytochrome b561 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L675_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 4.630e-61
Identity = 101/151 (66.89%), Postives = 119/151 (78.81%), Query Frame = 3
Query:  210 LAAFVQKLKVALDKITTARAGIVNAAKNPRWAKPRFLTHLVGPLIALLVIASTFHKTPKLTLFSLHPIFMSVAFVVLMPEGVVAYRNHLLLDSFGPIMQHGTKHKNRTIHMALLVLASMFAGLGLVFIVANKLLTQSAILPHTLHGVIGTI 662
            +   +QKLKV LDKITTARA +V A K+P W KPRFLTH++GP+IA++VIASTF KT  L LFSLH   M++AFVVLMPEGVVAYRNHLLLDS  PIM +GTK K RTIH+ L VLASMFA LGL FI  NK+  +++ILP T HGV+G I
Sbjct:    1 MEGLMQKLKVVLDKITTARARVVAAFKSPAWVKPRFLTHIMGPVIAVIVIASTFSKTESLNLFSLHATCMALAFVVLMPEGVVAYRNHLLLDSLSPIMSNGTKAKKRTIHLTLQVLASMFAALGLFFIAGNKVYHRNSILPRTWHGVVGAI 151          
BLAST of mRNA_H-paniculata_contig6674.14559.1 vs. uniprot
Match: D8LSC7_ECTSI (Cytochrome b561 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC7_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 1.610e-60
Identity = 101/151 (66.89%), Postives = 120/151 (79.47%), Query Frame = 3
Query:  210 LAAFVQKLKVALDKITTARAGIVNAAKNPRWAKPRFLTHLVGPLIALLVIASTFHKTPKLTLFSLHPIFMSVAFVVLMPEGVVAYRNHLLLDSFGPIMQHGTKHKNRTIHMALLVLASMFAGLGLVFIVANKLLTQSAILPHTLHGVIGTI 662
            +   +QK+KV LDKITTARA +V A+K+P W KPRFLTH++GP+IAL+VIASTF KT  L LFSLH   M++AFVVLMPEGVVAYRNHLLLDS  PIM +GTK K RTIH+ L VLASMFA LGL FI  NK+  +++ILP T HGV+G I
Sbjct:    1 MEGLMQKMKVVLDKITTARARVVAASKSPAWVKPRFLTHIMGPVIALIVIASTFSKTESLNLFSLHATCMALAFVVLMPEGVVAYRNHLLLDSLSPIMSNGTKAKKRTIHLTLQVLASMFAALGLFFIAGNKVYHRNSILPRTWHGVVGAI 151          
BLAST of mRNA_H-paniculata_contig6674.14559.1 vs. uniprot
Match: A0A836C9M8_9STRA (Cytochrome b561 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9M8_9STRA)

HSP 1 Score: 125 bits (315), Expect = 7.350e-31
Identity = 63/153 (41.18%), Postives = 98/153 (64.05%), Query Frame = 3
Query:  213 AAFVQKLKVALDKITTARAGIVNAAKNPRWAKPRFLTHLVGP--LIALLVIASTFHKTPKLTLFSLHPIFMSVAFVVLMPEGVVAYRNHLLLDSFGPIMQHGTKHKNRTIHMALLVLASMFAGLGLVFIVANKLLTQSAILPHTLHGVIGTIV 665
            AA  + L+ ALD+ T  R  + ++   P+W KP+++TH++    +I ++VI +   +T   ++FS HP+FMS+ F++ M  GV+AYRN  LLD   PIM HG   K+RT+H+     A  F  LGL+FIVA+KL   S ++PH++H V+G+ V
Sbjct:    3 AAVSENLRAALDETTVRRTRLFSSFTTPKWLKPKYMTHVLAAANVITIVVIVAIHERT--FSVFSFHPLFMSLGFLMCMSLGVIAYRNKFLLDLLSPIMMHGPTTKSRTMHITFQSFAGGFILLGLLFIVASKLKHGSTVVPHSIHAVLGSAV 153          
BLAST of mRNA_H-paniculata_contig6674.14559.1 vs. uniprot
Match: A0A7S2SRB3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRB3_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 5.680e-18
Identity = 47/116 (40.52%), Postives = 72/116 (62.07%), Query Frame = 3
Query:  315 FLTHLVGPLIALLVIASTFHKTPKLTLFSLHPIFMSVAFVVLMPEGVVAYRNHLLLDSFGPIMQHGTKHKNRTIHMALLVLASMFAGLGLVFIVANKLLTQSAILPHTLHGVIGTI 662
            + TH++   +A+L+I +    T   +LFS HPIFM+V  VV M EG + YRN  L+ +F PIM   +K + R+IH  + + A +F+ +G++FI+ANK     +  P TLH  IGT+
Sbjct:   64 YFTHILAIPLAVLLIVAVLITTRTFSLFSFHPIFMTVGCVVFMSEGFLVYRNGTLVSTFSPIMGGSSKSQARSIHATMQISAVIFSFIGVMFILANKARLGKSFTPATLHSWIGTL 179          
BLAST of mRNA_H-paniculata_contig6674.14559.1 vs. uniprot
Match: A0A4D9CVZ3_9STRA (Cytochrome b561 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CVZ3_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.170e-17
Identity = 54/164 (32.93%), Postives = 84/164 (51.22%), Query Frame = 3
Query:  243 LDKITTARAGIVNAAK--NPRWAKPRFLTHLVGPLIALLVIASTFHKTPKLTLFSLHPIFMSVAFVVLMPEGVVAYRNHLLLDSFGPIMQHGTKHKNRTIHMALLVLASMFAGLGLVFIVANKLLTQSAILPHTLHGVIGTIVSSSRPGCVSVCMQSAGGLQML 728
            LD +T  R   V   K  +P   +   + HL    + L +   +  +   LTLFS HP+FMS+  V+ M EG++AYRNH       PIM++  + K + IH    +LA++   LG+ FI +NK+     ILP ++H  +G +V      C  + +Q   GL+ L
Sbjct:   48 LDNVTELRRNFVARLKILDP-LVESNLIIHLFAISLLLWIWGISLARAHTLTLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVLGMAFIFSNKVKKHRTILPTSIHAALGFLV------CALMVLQMIAGLEKL 204          
BLAST of mRNA_H-paniculata_contig6674.14559.1 vs. uniprot
Match: W7TJN5_9STRA (Cytochrome b-561 domain containing 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJN5_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 9.300e-17
Identity = 52/163 (31.90%), Postives = 83/163 (50.92%), Query Frame = 3
Query:  246 DKITTARAGIVNAAK--NPRWAKPRFLTHLVGPLIALLVIASTFHKTPKLTLFSLHPIFMSVAFVVLMPEGVVAYRNHLLLDSFGPIMQHGTKHKNRTIHMALLVLASMFAGLGLVFIVANKLLTQSAILPHTLHGVIGTIVSSSRPGCVSVCMQSAGGLQML 728
            D +T  R   V   K  +P   +   + HL    + L +   +  +   LTLFS HP+FMS+  V+ M EG++AYRNH       PIM++  + K + IH    +LA++   +G+ FI +NK+     ILP ++H  +G +V      C  + +Q   GL+ L
Sbjct:   36 DAVTELRRNFVARLKILDP-LVESNLIIHLFAISLLLWIWGISLARAHTLTLFSFHPVFMSMGCVLFMTEGILAYRNHACFQFLSPIMRNSARVKLQNIHRGFHILAAVCVVMGMAFIFSNKVKKHRTILPTSIHAALGFLV------CALMVLQMIAGLEKL 191          
BLAST of mRNA_H-paniculata_contig6674.14559.1 vs. uniprot
Match: A0A1L8H776_XENLA (Ascorbate ferrireductase (transmembrane) n=4 Tax=Xenopus TaxID=8353 RepID=A0A1L8H776_XENLA)

HSP 1 Score: 53.9 bits (128), Expect = 6.910e-5
Identity = 47/156 (30.13%), Postives = 72/156 (46.15%), Query Frame = 3
Query:  276 VNAAKNPRWAKPRFLTHLVGPLIALLVIASTFH----KTPKLTLFSLHPIFMSVAFVVLMPEGVVAYRNHLLLDSFGPIMQHGTKHKNRTIHMALLVLASMFAGLGLVFIVANKLLTQSAILPHTL-HGVIGTIVSSSRPGCVSVCMQSAGGLQML 728
            V++ + P +   R L  L G L  +L +  T        P  +LFS HPIFM++AFV+ M E V+     LL     P+     K K R +H  + +   + AG+G  FIV +K   +S  L  T  H ++G +   +       C Q   G+ +L
Sbjct:   13 VDSTRVPDFWLYRCLRRLSGLLAHILALGFTIFLIILARPGTSLFSWHPIFMAIAFVLCMTEAVL-----LLSPETSPLCPLSRKSKTR-LHWLMQLCVPLLAGIGFAFIVCSK--NRSEHLHMTSWHSILGVLTLGAT------CCQLVCGMALL 154          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6674.14559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L675_9PHAE4.630e-6166.89Cytochrome b561 domain-containing protein n=1 Tax=... [more]
D8LSC7_ECTSI1.610e-6066.89Cytochrome b561 domain-containing protein n=1 Tax=... [more]
A0A836C9M8_9STRA7.350e-3141.18Cytochrome b561 domain-containing protein n=1 Tax=... [more]
A0A7S2SRB3_9STRA5.680e-1840.52Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9CVZ3_9STRA1.170e-1732.93Cytochrome b561 domain-containing protein n=2 Tax=... [more]
W7TJN5_9STRA9.300e-1731.90Cytochrome b-561 domain containing 1 n=1 Tax=Nanno... [more]
A0A1L8H776_XENLA6.910e-530.13Ascorbate ferrireductase (transmembrane) n=4 Tax=X... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6674contigH-paniculata_contig6674:747..9747 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size880
Cds size564
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6674.14559.1prot_H-paniculata_contig6674.14559.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6674 863..9547 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930789.105454-UTR-H-paniculata_contig6674:746..8621622930789.105454-UTR-H-paniculata_contig6674:746..862Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6674 747..862 -
1691481452.891941-UTR-H-paniculata_contig6674:746..8621691481452.891941-UTR-H-paniculata_contig6674:746..862Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6674 747..862 -
1622930789.1628664-UTR-H-paniculata_contig6674:9547..97471622930789.1628664-UTR-H-paniculata_contig6674:9547..9747Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6674 9548..9747 -
1691481452.9448028-UTR-H-paniculata_contig6674:9547..97471691481452.9448028-UTR-H-paniculata_contig6674:9547..9747Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6674 9548..9747 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930789.117014-CDS-H-paniculata_contig6674:862..10751622930789.117014-CDS-H-paniculata_contig6674:862..1075Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6674 863..1075 -
1691481452.9037921-CDS-H-paniculata_contig6674:862..10751691481452.9037921-CDS-H-paniculata_contig6674:862..1075Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6674 863..1075 -
1622930789.1280496-CDS-H-paniculata_contig6674:1791..19391622930789.1280496-CDS-H-paniculata_contig6674:1791..1939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6674 1792..1939 -
1691481452.9167898-CDS-H-paniculata_contig6674:1791..19391691481452.9167898-CDS-H-paniculata_contig6674:1791..1939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6674 1792..1939 -
1622930789.1385167-CDS-H-paniculata_contig6674:2445..25581622930789.1385167-CDS-H-paniculata_contig6674:2445..2558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6674 2446..2558 -
1691481452.9278393-CDS-H-paniculata_contig6674:2445..25581691481452.9278393-CDS-H-paniculata_contig6674:2445..2558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6674 2446..2558 -
1622930789.1521776-CDS-H-paniculata_contig6674:9457..95471622930789.1521776-CDS-H-paniculata_contig6674:9457..9547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6674 9458..9547 -
1691481452.9360273-CDS-H-paniculata_contig6674:9457..95471691481452.9360273-CDS-H-paniculata_contig6674:9457..9547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6674 9458..9547 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6674.14559.1

>prot_H-paniculata_contig6674.14559.1 ID=prot_H-paniculata_contig6674.14559.1|Name=mRNA_H-paniculata_contig6674.14559.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=188bp
MGCLAAFVQKLKVALDKITTARAGIVNAAKNPRWAKPRFLTHLVGPLIAL
LVIASTFHKTPKLTLFSLHPIFMSVAFVVLMPEGVVAYRNHLLLDSFGPI
MQHGTKHKNRTIHMALLVLASMFAGLGLVFIVANKLLTQSAILPHTLHGV
IGTIVSSSRPGCVSVCMQSAGGLQMLFWIFCSYVKLG*
back to top

mRNA from alignment at H-paniculata_contig6674:747..9747-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6674.14559.1 ID=mRNA_H-paniculata_contig6674.14559.1|Name=mRNA_H-paniculata_contig6674.14559.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9001bp|location=Sequence derived from alignment at H-paniculata_contig6674:747..9747- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAAAACCCAAACTGCAAGGCCTAACACCAAAGTCGCGAAGACAGGAACA AATGCTGAAAGGAAGACGAGGGACCAGTGGCTAAACAGCGTTGATACTAC GTACTCCCGCTTCACTGTTCAAGGAGTGTGGATGGATTAGCAAAAATTCC AGGCAAATCATAGTACCAGAGCACCAGTACTGTAAAGACAGCTGGTATAG ATGGGGTGCCTAGCAGCATTCGTGCAGAAGCTCAAGGTGGCGCTGGATAA AATCACCACAGCACGGGCGGGGATAGTCAATGCTGCCAAGGTGCGTATAT GTGCGTGTACTTATCTCGATCCACATATGTTCACTGTGCCCATACCCTCA TTCTTCCCTTTATTGCCCCTTTAATGCTGAACTAACTTTGACTAATGGTA ACGCTTCAGCCCTAGTTTCCCGTCCAATCCTCATCTAGCTCTACCCTCTA ATGCCCTCCTGTACCTTGTCCAGACAGCGAAGAATGATGCCTGTGACATG ATTGCCTGGACAACAAGCCCATCGCAGCTAAGAGACACAGTCCAGTACAG ACAAACAGTACATACAGCAGTAGCAGCAGATAGATACTACGGTAGGACAC ATTATCGTGTCCCTCACATATTTCCAAGACTAAGATGAATTTTTCTATGT TTTTTTCTTGATCAACACTGTACTTCCCTAGGGCACATATTCTTCTCTGG GTGTTCTATCAAAAAGTCAAATGGCAATAAGATATGGCCAAAACTAGAGG TTTTCCTATGGGAAATAGGGATTTTCTGGAAAAGTGCATTTTCTCGTAGA AAAATCTGGTTTCTTGGCTATATCTCGGCTATCGTGAAGAAAAACAAAAA ATCGCTCTCTGAATGTCTCAGCGCGACCAATAAGAACATAACAATAATAA TAAAAGGTTGAATTGGCGAATAATATAGAAAAAAAACTGATATTGCCTGG ATTGTGACAAAAAGTGGTACAATATTTGCTTCTCCACGCTCTTTGAGCGC CATTCGGTGGTTTTTGTGTCGAGATAGGCAAGACAAGTGAGCTGCCACAC GTACGGTAGGCCAAACAGGCACGCTTTGGTACTAGAACGACCATCACTCA CGATTTTTCGGTGTGTGAGATTCCCTCTCCAGGGTACTGAACGGTGGACG ACTCCCATTTACCGAGAACGTTGATGCCGTTGACTGCATTAATTCGTCAC TCTCAAGACCATACGCCCACACGAACATACATATGGCGTCCCTTTTCATA TATACATCAATTCGCTCGATGATGACTCCTCGTCAGTCCCTCGTGATCCC CCACTTCCGTCAGACCTATCTCTCCCTGCCTCGCTTTCGTTCGCTGGGTC ACTCTCGCTGACTGGAGTAGCTGCTGCAGCAGCAGCTGTTGATTATTATT TTTGTCTTTTGCCTGATCTCATGCTTCCTTTGACTGCTGTACTTACTTCA GACCTCACTGCAGTCGATGATGGCTCTGCGCCACCAGACGAGCCTTCAGG CCTCGACTGTGATGCCCTTGGGTGCTGCTTCCGTACCTCGACCGCCTGCG GGCTGAACTGCTTGCATGTCTCCATCTCTACCAAATCTCCCAATACAAGT TTTGGCGCACAAATTTTTTTTGTGTGTGTGTGTTTTTTTTAAACATGACT TGGCGTCGAAAAAGCCTGAACAAAACGTTGTGAATTGCCTTGCACAATCG CACACAGAATGGGCTAAAACCCCTCCTCAAATTAATGCGCCAGGTCCAAG GGAACCTCTCCAACTACTCTCGCAGCCGCTTGCTCCGCGGCGCAGAAAGG ATTAGAGCTCAAATGGAATTACCGTTTTGTGAGGGCTGACGGAAGCTTTG GCCATTGTAATTTTGTGAAAAACACATAGGATTTGAATTTTTCTTGTATG GTTGGAAGCGCCAGAGTTGAGGCTGTCCGGAGATACCTACTTCTAAGCAT ACAAATCGTTCTATGTGAAATTATGGTGAAAAAACACCCGATTTGGACCC GAAATGACGTATTTTGGGGGGGCAAAAGAGGCGCATTTCGCGAGAAAAGA GGACACCATAATGTGTCCTACTGTAGGGGTTGGCATGGTTCTGCCCACGA AGACTGCAGCGTTCGATATTGTTGTCAGATAGGTGCTTTTTTTGTTCTGA CGTAGCCTCTCAAAAGGCGCTAAAAATGGTTTACGACATGGTTCATGATA TTCGTATTTAGACAGTGGAGCTGGGTGCGTGTTTTTCGAACCTTATCTTG CGAGCTGAATCGGGCTCTACAGAGTCAGTAAATAGTACAGATCGCCACGA AGTGTTGTGCAGCGCAAGTACAGTACTTTAGCCTGATTGTATGTACAAAC ATGCAAACATCGGGAGGTGGAGTCTTCCCAGCCATGGGCATTGATGGGGG CAGTGATAAACAAAGCTAGGGGGTGTTCTCGGTACCGGTATTTCAAAAAT GACTCAACGATACGGTCAGTAATTTTCTCGGCATTGTGTCGGTAAACGGT ACCCGACATATCTGTAGCACGGTATTGTACGACATAGAGATTTTTCGGTA TTTGCGCGGTAAGCGGTATTCAATTGTTTCCTCCCGCGGTACGGTATCTG ACATTGGGCACAGTAATTCGGTTCCCAAGCCTTGCCCAAGGACAAGATAC AAAATACAGCCATAAAACCCATGTGCATGTTGTAAATGGCATGCACGGGG AATTCCACAAGGAAGTGACTCATTTATCCTGAGAGCCCGTTTGAGCGACT TAAAAAAGTTCGTAGTTTGGAGGTGCCACCGAACACCATACAACTCTTGA GTTGACTACAATCGCTGCCTCGTCTGGCGTGGTGTGACGCGCATCTAGGA GGCATGATTGTCGCAAGAAAAGAAGGATGAAGCAGAAAATTAAATAAAAA TCAAATAAATTTGTTGAAAAGTACTGAAAAAACTTGTTCAGAGCAAACTG CATTACAGTGTACAATGCGCTGAACTACTTTACTAGGAAACCGGTACCAA AGAAACGTGAAAAAAATAGCAAAATTTGGGCCGGTCAGGGAAGTGAGGGT CAGTACTTCTCTGGCAGGGCTGGCGGCAGCATCGCCCCTAGCTCGCGAGG AAGCAGGGGTAGGTACAGAGCCTGCAACAGCAGTGACTGCAGAGTCATCA GTGCCCGCGTTGCCTTCGCCAGCAGCTGCTGGGCTCATATCTACACCCAT GATGCAGGCGGATGTCTGGCGACTACCATTGAGTGACCTAGTTAGTAAAT CATAACATAACGGTTGTACGGCACACTATTACACCAACCCACATTCAATC AGACCCGCGGTCACTTGTTTTGGCGAATCCAGTTATCTCAGCCCCACGGT CATGGGCCGTAACGGGGTTTAACGATACGGTAAACAGGTCATGACTCTGA CATCGCGGTAATCACCTTTGGCTGTGTCGTGCACGATAGCAGTAAACGGG AAATCGAGTTTTTCACGGTATCGGTACAGAAAACAGAGTACCGCGGTATT TTTACCGGGAACACCCCTGAATTTTTTTACATTTGGTCCTATATGTAAAT CAAATCAGAAACCAGCATGATACGCCACAAAATAACACAAGTCCTACTCT TTGCCCGTTCATCGTATTGGTGCAACAAACCGATGGCAAATTGGTATGCT ATGCCCGTATTACTGAACCACAGTGCGCTCATATAGTAAGGTACTGTAAA GGGTATCATAACCCCGCCGGGTGTTGATTCTTTTAGTGCCGTTTCCCGTC TATTAATAATGCTCAGAATCTAATCCTCAGCTCCAAATAGTTGAAAAAGA TGCATATGGCGTGATTTTTGTGCGGGGACAGGGAGTCGCCGCTTTGCAGA TAGATAGCAGGCATGGTTCTGCCCCCAGTCAGTGACTGCAGCGCTCGACA TTAGTCGTCATATTCATGTAATCGTCCGAAACATCGAACAACCTCATCCG CCGACAAAAAAATTCAACTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAC GATTTTCGCTATAAGCAAAATGCCGCACGTCTGTGGACAATTCTCGGCAA AGTGTATCCCGACAAGACGTTCCCCAATCAGACAAGTGTTTGGTGTCACA TTTTTACCCCCGAACAAATACGAATACTTGGTGTGTTTGCCACGAAAATT AAAAAGTGTTCACCTGAGTTTCAAAATGAGCGGACACATAAGATGAAGTA CCCACCCCTTTCCGTTCGATTTACGAGTATTATTAGCATGGCCCGGGGCA CACAGAGCACACCAGCTCATTCTGAAACTCAGGAGAATACTTTTTAATTT TCGTGGCGAATACGCCAAGTATTCGAATTTTGCCCAGGGGGTGCACAGCA ACGTTACTACTCAATATACAGATGTAACTACAACCTAAAAACGCATTTCT TCGGGAATTGAAACGCCCCTAAATTGAAAAAAGAAAAAAAGGATGTGCGG CATGCAGGGGGCAGGCTACGCGGCCGGCGGATCACAACACCCCCTTAATA ACCGTGAATACTGTCACATAAAATATAAGCTGTAATTTCTACATTCATTT GGGAGCAATTGCTACCTTGTATGGGAGGGTGTTTAATATCAAGACCTGGA CATCGCAAGGCGCAAATCCAACTCTACAGCTGTCACTTGCCTCCTGTCCC TTAAAACCTTTCGAAACAGGACCGAGTGTACACTGCCCTGGAGGTCTACG ATGGTAAAAAAGAAAACAAAACGCGAAAATCACCAGGGGGTTTTATCCCA GGTCGTTGTCAAGCATGCGAAGTTTCGGTTTCGTGTGTACATTCTTAATT CGCAATTCGCTGTGCCCGGATGCGCGCGGAATCAACGTCGGAAGTAAAGT TGACGCTAACCTTGACGCCCACCCCCTAGGCTTAGAGTGCGTTAATAGAG GTTAAACCGGGCCCCGGTAGCGTCTAAAATAACTCAAACCCTGCCCCGCT CCGTGGCGTGGTATGGACCCTGGAGCCAGGTTCGTGGAGGGGTCAGGCAG TACCTCCATAGTAAAACCAAGTAAAACGAAACTTGGTATGTTTGACGACC ACCTGGGGTAAACTTATTCTTGCAAGTTTGCGGCTGAGCCAGCGCACGCT ATTGAGCATAACGGGTACACCACGCCCCCGATATACACCGTGATGAAGGT CCCAACCTGTTCAACCAAGTTCCGAGATATTTCTGGCTGCTTTTTGGAGC TTCAGGATGCTGTATCTAGGGCACGGTATACCCATTTGCACGACTTACAC CAAAAACGAAAATGAAGGGAATAAATTATTTTTTTGACCAAACTGCTTCG CAAGCAGCTTGAAATTTCGGACCTACCAAAAAAAACGGCTTTGGACCCGA CGCTTGTCAAGGGGTATCTTCGACCAATGTTTTCTGTTCCTCACGCAAAT GGGTTCGAGCGGTGCCGCGAGATTTTTATTGGATCACTCAATATATATAC ATACACTACAGGGGGACGTGGTAATTGGAAGTAAATTCATATCTCAATCA ATACGAATCGGAATGAAACACGTATTTTTGCGTTAGATCTGTATGAAATA ATTCAGCAATCTGTCCATAACAATATTTTTGAAAAGGAAAAATGAAAATT CGAAAAGATACGAGCTAAAACATCGTATTTTCCTAGATATAACGAAAATC GTCTAAATTCGTCAATTTACCGTGAGAATGAGTGATGTTTTCGGGCTTCT TCACTAGTACATCGAAAATCGCAAAACGGCTTTACTCGTTCCCAGGTATG GTTTTTTTTCAAGTGTAAAAGCAATCCGCTTGTAACAATACCTATTTTGT GCTGAAATAGAACCACTTAAAAAGTCAAAATTTTCCACAGGAACTGGGAT ATGGCAGTTTTGCACGGAGGTAGGCGGGCTTTGTAGTATTTCTTGAGATA GAGGTTGCCGTTTCCATTTATATTTTGCTACATTAATTGAGAGTGACAAT GGAAACGTGTAGAAAACGTCCGTTGTGAAAAATCCGTTTTTTTCAGCGGA GAAACACATTCAGAAGTAGTTTTTTTTTTCTTGACCAGCAAATAGAATAT TTCAGGTTGTCACGGAGAAAGCTGCAATACACGGTATTACTTGAGATGTA GGGCAACAATTTGAAAATCCTTGAGTGTAGTTGTACGTGCGGATCTCGAA AAGCTTTGTAAAGAATCTGCATATATACATTGTTTTTGTTTTTGTTTTGG CATAGAAACGGAAATTTGATAAATTCAATTTTTTCTTGGAGAATCTGAAC ATGGCAGTTTCGTGAGGAGACGGGCGTTTGTTGAAGCATTTCTTGAGACA GAGGATGCCGTTTCCATCAATATTCCCAAACATTGCTGAGAGTGACACTG GCGACAAGTTGGGAAAACCCACTACAAAAGAAACCTTTTTTTTTTGCGCC AAAACCCGAGGTTCACAAGCAGCAGAAACTCTGACCTTCACAACAAGTCC TGCTCAACGAATCAGCAAAAGCCCTTTTACAGATTTTCGGCCAATGTCTA AAGCAAGAAGCCCCACGTGGCCTCCCTCCCGCCGCGGTCGTGGTTCGGCA GGGAGAACGGATTGCAACTCCTCCAAGGTTTTGACCGCACTGTGTGATGC TTGTGCGGGCCTTTTTTGACGAAAATTCCCACCCCGGTAAATTAAACTAC CGCAATGACCCGAATACACCGAGAGGTCTCCGGGGATAGTGGGTTTGTGC CGTGATTCCTTTTACTCCGCAAGACATGGCCTATAAACTGGCCGTGAGAT CCCCAAACTGCGCCAAATTTCGGGAAACGAAAATGGCCTAGATAGTGAGA TAATCGCTTTCGCTTAATATGTCCCTCTGTGCTCCGGAGTATATGCACAA TTCGATCATTATATACGAATCGTTTTTTTGCTTTACTGCATCATCATGGT TAGGGACACTTTACTATACCACATCAATCCCGTACTCGTACGGTAGGTCG ACACATCAATCAATTTGACAAAAATACAGCCTATTACGCTAGATACGGTC AGCTTTTGGTCCCTTCCCTCTCTTATCCCTCGCCCCGCGAATTTACTGAT GAAGATGTTTTGTACAGTAAGTTTGTGTTTTGAGTAAATGTTGTTTGTGT GCCTGTTTGCTTCTGCTGTTGCTGCTGTTGTTGTTTCCGCGATCTCTTGT TTGTTGGGGGGTGAAATGATCGTTCTGCGGGGGGACTAGAATCCGCGATG GGCCAAGCCTAGGTTTCTGACGCATTTGGTGGGACCGTTGATCGCCCTCC TCGTCATCGCAAGCACCTTCCACAAGACGCCCAAGCTTACGCTCTTCAGT TTGTGGGTATCTAGTTACTACTGCTACCGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGCTGATATTTACGGCTTGTGCTGTTGTCTGCCCA CTATGGCTGCAAACGGACGGCTAAGAACTTCGTAATAATGACAGCAGCAG CAACAGCAACAATAATCCAGTATGTCTCTGGACGTATGGCGTTGGCTAAT GTCGTGTTGTCGGGAAGACCGTGAGGTTAGAATGGCGCGAGTTCTGTATG CACATGTTTTAGGGATACATATGTGTTGCAAGCACGATAAAATGGGAGCC TGATGGTAGCCGACACTGCAAATGATGGGGACGAAAGGTCACGGAGGGGG TTAGGTGACTTTTCTATGCTGTACATACACACTGCGCACCGAGTTGGTTT GATTTGGCCAAAATATCCCTATTTTTTTAAGAAAAACGCGTGTGGGATGT GGGTCGCTTGTTCCGCGTTTTTTTTTACTGTCTTCTTTTTTTCCTCCGTT TTTTTCAGGCATCCAATCTTCATGTCTGTTGCGTTCGTTGTCCTCATGCC GGAGGGCGTGGTCGCGTATCGAAATCACCTCCTCTTGGATTCCTTCGGAC CGATCATGCAGCACGGGACCAAGCACAAGAATCGCACAATCCATATGGCC TTACTGGTGCGTGTTTCTTGTCGGCCTGGAGGGGGCAGGTTTGGGTGGAG GGGGGCACTCACTGTTTCGGATTTATCCCAAGGGATGTTTTGGCATGTTG TGGACTAGAGTCGTATTGATCCCTTAAGCTAAAGATATAGTAGGTTAACG CAATATCTATCTCTTTAGGATGCTCTAAGACCGTCCCCATCACACCAGGT GCTTTCGTTTGAAGAGCCCTTACCGTTTATTCACACAGTCCACTTGTCAT TTCCTGGTAACCTTCAATACTCTCAAGTCACAGAAGCGCCGCTTGGCACC CTCGTTCAGTTTGTGTCGATTTTAACGTTTCAGACCTTTCACCTTCGAAC CCATCTTCAGAAGAAAACAATGACATCTTGCGGTGAATGCCGAACGCTGC AGCGCAAAATCACGTCAATTATCCCTCTGTGCTGCATGTACTGTCGTCTG TTCGAACAGCCGCTCCTCCCTATCTCCATCAGGGTGCAATTTTCGTCGTG TCTTTGGTTGTTGTTGAAGTCTTTGGGGTGAATGTCTGACGAAGGCTATA ATAGGGTTAAACGTGACGTTCCGCTAGTTACTTTGCTGCCAGTGATTCTG GAACATAGCGATATTCTATTTACGCCTGTCATTTGTTCACTCTAGTTTTT TCTAGTTTTATTTTTTAGTGTCTCTTCAATTCCGTCAATCCGTTTTCACC CAACTTTGTCGAAACAAAACAGGTCCTCGCATCCATGTTCGCCGGACTGG GGTTGGTGTTCATCGTGGCGAACAAGTTGTTGACGCAATCAGCCATTCTA CCGCACACGCTGCATGGTGTTATTGGGACTATCGTAAGTAGCTCCCGACC CGGGTGTGTCTCGGTATGCATGCAGAGTGCTGGGGGGTTGCAAATGCTGT TTTGGATCTTTTGCAGCTATGTAAAGTTGGGGTGATTTCCAGAGGTCTCT TTGGGCCCATTTCGCCGCCCGTGTACAGCTGTGTACCTAGTGTAATGTGC CAATCGCTCAGACGCGTGGTCAGGGTAATGGTCCATAGTTCGTACAACGG G
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig6674:747..9747-

>mRNA_H-paniculata_contig6674.14559.1 ID=mRNA_H-paniculata_contig6674.14559.1|Name=mRNA_H-paniculata_contig6674.14559.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at H-paniculata_contig6674:747..9747- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGTGCCTAGCAGCATTCGTGCAGAAGCTCAAGGTGGCGCTGGATAA
AATCACCACAGCACGGGCGGGGATAGTCAATGCTGCCAAGATGGGGTGCC
TAGCAGCATTCGTGCAGAAGCTCAAGGTGGCGCTGGATAAAATCACCACA
GCACGGGCGGGGATAGTCAATGCTGCCAAGAATCCGCGATGGGCCAAGCC
TAGGTTTCTGACGCATTTGGTGGGACCGTTGATCGCCCTCCTCGTCATCG
CAAGCACCTTCCACAAGACGCCCAAGCTTACGCTCTTCAGTTTAATCCGC
GATGGGCCAAGCCTAGGTTTCTGACGCATTTGGTGGGACCGTTGATCGCC
CTCCTCGTCATCGCAAGCACCTTCCACAAGACGCCCAAGCTTACGCTCTT
CAGTTTGCATCCAATCTTCATGTCTGTTGCGTTCGTTGTCCTCATGCCGG
AGGGCGTGGTCGCGTATCGAAATCACCTCCTCTTGGATTCCTTCGGACCG
ATCATGCAGCACGGGACCAAGCACAAGAATCGCACAATCCATATGGCCTT
ACTGGCATCCAATCTTCATGTCTGTTGCGTTCGTTGTCCTCATGCCGGAG
GGCGTGGTCGCGTATCGAAATCACCTCCTCTTGGATTCCTTCGGACCGAT
CATGCAGCACGGGACCAAGCACAAGAATCGCACAATCCATATGGCCTTAC
TGGTCCTCGCATCCATGTTCGCCGGACTGGGGTTGGTGTTCATCGTGGCG
AACAAGTTGTTGACGCAATCAGCCATTCTACCGCACACGCTGCATGGTGT
TATTGGGACTATCGTAAGTAGCTCCCGACCCGGGTGTGTCTCGGTATGCA
TGCAGAGTGCTGGGGGGTTGCAAATGCTGTTTTGGATCTTTTGCAGCTAT
GTAAAGTTGGGGTGAGTCCTCGCATCCATGTTCGCCGGACTGGGGTTGGT
GTTCATCGTGGCGAACAAGTTGTTGACGCAATCAGCCATTCTACCGCACA
CGCTGCATGGTGTTATTGGGACTATCGTAAGTAGCTCCCGACCCGGGTGT
GTCTCGGTATGCATGCAGAGTGCTGGGGGGTTGCAAATGCTGTTTTGGAT
CTTTTGCAGCTATGTAAAGTTGGGGTGA
back to top