prot_H-paniculata_contig6672.14558.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig6672.14558.1
Unique Nameprot_H-paniculata_contig6672.14558.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length338
Homology
BLAST of mRNA_H-paniculata_contig6672.14558.1 vs. uniprot
Match: D7G4R0_ECTSI (Ribosomal large subunit pseudouridine synthase A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4R0_ECTSI)

HSP 1 Score: 414 bits (1063), Expect = 4.990e-142
Identity = 201/299 (67.22%), Postives = 235/299 (78.60%), Query Frame = 0
Query:   37 SDLKVLYSDEDIVVLDKPPGLRTVPGSIKSTEGSKSINRAQTEWHSGNKRSRQDFWIDVVHKACNSMLEDEQIAGNTELQGHLQRLTRENNVPRKRSKFANYAAVTLGLHGEEGEAISSRIWNAVDSRLKVEAGPGTDCLLTRVKLRWPEARHVHRLDQGTSGVMVMALTPEAAKELSRQFRERVTSKTYIAVLEGRMAKSPKSGTVVAKIRPDLNDRPRQIVDEKNGNAAETRWELLSREADRSVVNFTPVTGRTHQIRMHALSLGHPIMGDSLYGTEEGKAKSERLLLHATRLGFVH 335
            SD+ V++SD DIVVL+KP GLRTVPG     E      R   EWHSG KR RQ+FW DVVH AC S+L DE+  G  E + HL+RLT+ENNVPRKRSKF NY AVTLGL GEEG+ +S+R+W+ VD  LK E GPG DCLLTRV+ RWPEARHVHRLDQ TSG++VMALT EAA+E+ RQFRERV SKTY AVLEGRMAK+PKSG V AK+RPD ++RP+Q+  E+ GN A T WE + R+ DR+ V+FTPVTGRTHQIRMHA+ LGHP+MGDSLYGT EG AKSERLLLHA R+ F H
Sbjct:   22 SDVDVIFSDPDIVVLNKPTGLRTVPGKAVGPEAE---TRVHVEWHSGTKRQRQEFWTDVVHTACESLLNDEKTEGEEEFRDHLRRLTKENNVPRKRSKFHNYTAVTLGLEGEEGDKVSARLWDTVDGHLKKEVGPGVDCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTDNRPKQMFCEEKGNEAHTNWERIKRKEDRTWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYGTPEGTAKSERLLLHARRISFPH 317          
BLAST of mRNA_H-paniculata_contig6672.14558.1 vs. uniprot
Match: A0A1H9I0B1_9GAMM (Pseudouridine synthase n=1 Tax=Amphritea atlantica TaxID=355243 RepID=A0A1H9I0B1_9GAMM)

HSP 1 Score: 161 bits (407), Expect = 1.230e-44
Identity = 83/162 (51.23%), Postives = 109/162 (67.28%), Query Frame = 0
Query:  174 DCLLTRVKLRWPEARHVHRLDQGTSGVMVMALTPEAAKELSRQFRERVTSKTYIAVLEGRMAKSPKSGTVVAKIRPDLNDRPRQIVDEKNGNAAETRWELLSREADRSVVNFTPVTGRTHQIRMHALSLGHPIMGDSLYGTEEGKAKSERLLLHATRLGFVH 335
            DCL  RV+  +P AR VHRLD  TSGVMV+AL+  + + LS QF+ER T K+Y A++ GR+AK+  SGTV   +R D  +RP QI+D + G +A+T W L+ +  D S V  TP+TGR+HQ+R+H   LGHPI+GD  Y T     +SERLLLHA  L F H
Sbjct:   38 DCLWRRVQQHYPTARIVHRLDYATSGVMVLALSATSHRHLSIQFQERKTDKSYQAIVAGRLAKN--SGTVNQPLRCDWENRPLQIIDHQQGKSAQTHWRLIEQLDDASRVELTPITGRSHQLRVHMQFLGHPILGDRFYATPRQIERSERLLLHAHSLSFSH 197          
BLAST of mRNA_H-paniculata_contig6672.14558.1 vs. uniprot
Match: A0A2Z4UKY3_9HYPH (Ribosomal large subunit pseudouridine synthase A n=2 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2Z4UKY3_9HYPH)

HSP 1 Score: 159 bits (403), Expect = 6.490e-44
Identity = 81/162 (50.00%), Postives = 110/162 (67.90%), Query Frame = 0
Query:  174 DCLLTRVKLRWPEARHVHRLDQGTSGVMVMALTPEAAKELSRQFRERVTSKTYIAVLEGRMAKSPKSGTVVAKIRPDLNDRPRQIVDEKNGNAAETRWELLSREADRSVVNFTPVTGRTHQIRMHALSLGHPIMGDSLYGTEEGKAKSERLLLHATRLGFVH 335
            DCL TR ++ +P A  VHRLD  TSG++VMA+TP A + L  QF +R T KTY A + G+M +    GTVVA I  D  +RPRQ++D + G +AETRW++L REA  S V   P TGR+HQ+R+H LSLGHPI+GD++Y  ++    ++RL LH+T L   H
Sbjct:   48 DCLETRARIEFPTATIVHRLDMDTSGILVMAMTPNAHRHLGLQFEKRKTKKTYTARVWGKMTED--EGTVVAPIITDWPNRPRQMIDFEKGRSAETRWQVLDREAGASRVALYPHTGRSHQLRVHMLSLGHPILGDNIYAHDDAFNAADRLQLHSTSLTLHH 207          
BLAST of mRNA_H-paniculata_contig6672.14558.1 vs. uniprot
Match: A0A2E0XYT5_9BACT (Pseudouridine synthase n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2E0XYT5_9BACT)

HSP 1 Score: 159 bits (401), Expect = 1.020e-43
Identity = 77/162 (47.53%), Postives = 112/162 (69.14%), Query Frame = 0
Query:  174 DCLLTRVKLRWPEARHVHRLDQGTSGVMVMALTPEAAKELSRQFRERVTSKTYIAVLEGRMAKSPKSGTVVAKIRPDLNDRPRQIVDEKNGNAAETRWELLSREADRSVVNFTPVTGRTHQIRMHALSLGHPIMGDSLYGTEEGKAKSERLLLHATRLGFVH 335
            DCL  R +  +P AR VHRLD+ TSG++VMA   +A +ELSRQF++R   K Y AV+ G +A     GT+ A IR D+++ PRQ++D+ +G  + T WE++ R+ DR+ +   P+TGR+HQ+R+H LS+GHPI+GD LY  E+ +  + RL+LHAT LG  H
Sbjct:   40 DCLAARAERAYPGARIVHRLDRDTSGLIVMARDADAHRELSRQFQDREVDKNYEAVVGGLVAID--EGTIDAPIRKDMDNPPRQLIDDVHGRPSVTHWEVIERQGDRTRLKLHPITGRSHQLRLHLLSIGHPILGDDLYAPEDLRDAATRLMLHATLLGLKH 199          
BLAST of mRNA_H-paniculata_contig6672.14558.1 vs. uniprot
Match: A0A7W2BME3_9HYPH (RNA pseudouridine synthase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7W2BME3_9HYPH)

HSP 1 Score: 159 bits (402), Expect = 1.090e-43
Identity = 80/162 (49.38%), Postives = 106/162 (65.43%), Query Frame = 0
Query:  174 DCLLTRVKLRWPEARHVHRLDQGTSGVMVMALTPEAAKELSRQFRERVTSKTYIAVLEGRMAKSPKSGTVVAKIRPDLNDRPRQIVDEKNGNAAETRWELLSREADRSVVNFTPVTGRTHQIRMHALSLGHPIMGDSLYGTEEGKAKSERLLLHATRLGFVH 335
            DCL+TR+  R+P+AR VHRLD  TSGVMV+A+ P A + L  QF  R   KTYIA+++G +A    SG V   IR D  +RPRQ++D   G +A T W++L+RE DRS +   P+TGR+HQ+R+H   LGHPI+GD+LY  E  +    RL LHA  L   H
Sbjct:   54 DCLITRLHKRYPQARIVHRLDLDTSGVMVIAMNPAAHRHLGLQFERRHVEKTYIALVDGNVAAD--SGRVDLPIRVDWPNRPRQMIDHAEGRSAVTDWQVLAREDDRSRIALRPLTGRSHQLRLHMRELGHPILGDTLYAPEAARKAMPRLCLHALNLSLYH 213          
BLAST of mRNA_H-paniculata_contig6672.14558.1 vs. uniprot
Match: A0A6N0HZW1_9GAMM (Pseudouridine synthase n=2 Tax=Gammaproteobacteria incertae sedis TaxID=118884 RepID=A0A6N0HZW1_9GAMM)

HSP 1 Score: 158 bits (400), Expect = 1.200e-43
Identity = 82/164 (50.00%), Postives = 112/164 (68.29%), Query Frame = 0
Query:  174 DCLLTRVKLRWPEARHVHRLDQGTSGVMVMALTPEAAKELSRQFRERVTSKTYIAVLEGRMAKSPKS--GTVVAKIRPDLNDRPRQIVDEKNGNAAETRWELLSREADRSVVNFTPVTGRTHQIRMHALSLGHPIMGDSLYGTEEGKAKSERLLLHATRLGFVH 335
            DC+++R+ + +PEA  VHRLD  TSG+MV+A   EA +ELSRQF++R   K YI+++ G    SP    G++   +R D  +RPRQ+VD K G AA T W +LSR+ DRS +  TPVTGR+HQ+R+H LS+ +PI+GD LY  EE    + RL+LHAT L F H
Sbjct:   35 DCVVSRLAIDYPEALIVHRLDWETSGLMVLARNREAHRELSRQFQDREVEKQYISIVYG----SPPEDHGSIDLPLRCDWPNRPRQMVDHKQGKAALTHWRVLSRDNDRSRIELTPVTGRSHQLRVHLLSIDNPILGDQLYAHEEALQMANRLMLHATSLSFRH 194          
BLAST of mRNA_H-paniculata_contig6672.14558.1 vs. uniprot
Match: UPI001A8EBC93 (pseudouridine synthase n=1 Tax=Motiliproteus sp. SC1-56 TaxID=2799565 RepID=UPI001A8EBC93)

HSP 1 Score: 158 bits (399), Expect = 1.600e-43
Identity = 80/162 (49.38%), Postives = 110/162 (67.90%), Query Frame = 0
Query:  174 DCLLTRVKLRWPEARHVHRLDQGTSGVMVMALTPEAAKELSRQFRERVTSKTYIAVLEGRMAKSPKSGTVVAKIRPDLNDRPRQIVDEKNGNAAETRWELLSREADRSVVNFTPVTGRTHQIRMHALSLGHPIMGDSLYGTEEGKAKSERLLLHATRLGFVH 335
            DCL  RV+ ++P AR VHRLD  TSGVMV+AL  ++ + LSRQF+ER T K Y+ +++GR+    ++G V   +R D ++RP Q+VD   G AA T W +L R AD + +  TP+TGR+HQ+R+H  SLGHPI+GD+ Y     +A S RLLLHA RL  +H
Sbjct:   32 DCLWHRVQQQFPTARIVHRLDCATSGVMVLALNADSHRALSRQFQERQTDKRYVCIVDGRVV--AETGHVALPLRCDWDNRPLQMVDFAQGKAALTHWRVLERAADHTRLALTPITGRSHQLRVHMKSLGHPILGDAFYAPPRVQAVSPRLLLHAERLRLIH 191          
BLAST of mRNA_H-paniculata_contig6672.14558.1 vs. uniprot
Match: A0A1G3AV14_9BACT (Pseudouridine synthase n=2 Tax=unclassified Planctomycetes TaxID=473814 RepID=A0A1G3AV14_9BACT)

HSP 1 Score: 158 bits (400), Expect = 1.920e-43
Identity = 86/180 (47.78%), Postives = 112/180 (62.22%), Query Frame = 0
Query:  161 VDSRLKVEAGPGT-----DCLLTRVKLRWPEARHVHRLDQGTSGVMVMALTPEAAKELSRQFRERVTSKTYIAVLEGRMAKSPKSGTVVAKIRPDLNDRPRQIVDEKNGNAAETRWELLSREADRSVVNFTPVTGRTHQIRMHALSLGHPIMGDSLYGTEEGKAKSERLLLHATRLGFVH 335
            VD    + + PG      DCL+ RV+ R+P+AR VHRLD  TSG+MV+A  PE+ +ELSRQF+ R T KTY+A + G       SG V   +R DL  RP QI+D + G  A+T W++L R  D   +  TPVTGRTHQ+R+H  +LGHPI+GD LY  E   A ++RL LHA  L   H
Sbjct:   31 VDKPANILSVPGRTPEKQDCLIHRVQKRFPKARIVHRLDFSTSGLMVIAQNPESHRELSRQFQNRETEKTYVAKVYG--CPDEPSGEVNLPLRCDLERRPLQIIDYQQGKTAQTFWQILERYEDSCRMELTPVTGRTHQLRVHMQALGHPILGDELYAHETAFAMADRLFLHAQELIITH 208          
BLAST of mRNA_H-paniculata_contig6672.14558.1 vs. uniprot
Match: A0A2E8J4A8_9GAMM (Pseudouridine synthase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E8J4A8_9GAMM)

HSP 1 Score: 158 bits (399), Expect = 2.270e-43
Identity = 75/162 (46.30%), Postives = 117/162 (72.22%), Query Frame = 0
Query:  174 DCLLTRVKLRWPEARHVHRLDQGTSGVMVMALTPEAAKELSRQFRERVTSKTYIAVLEGRMAKSPKSGTVVAKIRPDLNDRPRQIVDEKNGNAAETRWELLSREADRSVVNFTPVTGRTHQIRMHALSLGHPIMGDSLYGTEEGKAKSERLLLHATRLGFVH 335
            D +L R++  +P+   VHRLD  TSG++V++L+  A+ +L+RQFRERV  K Y+A+++G +A+   +G V   I  D ++RPRQ++DE+NG +A TR+++L+RE + + +   PVTGR+HQ+R+H  ++GHPI+G  LY TE    +++RLLLHA RLGF H
Sbjct:   44 DSVLLRMRAEYPDVAIVHRLDLDTSGLLVLSLSQRASSDLNRQFRERVIDKEYVALVDGLVAED--TGEVALPIASDPDNRPRQVIDEENGRSALTRFQVLTREDNCTRLQLVPVTGRSHQLRIHMAAVGHPILGCDLYATENAFQRADRLLLHAVRLGFCH 203          
BLAST of mRNA_H-paniculata_contig6672.14558.1 vs. uniprot
Match: A0A2D5B3Y4_9BACT (RNA pseudouridine synthase n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2D5B3Y4_9BACT)

HSP 1 Score: 158 bits (399), Expect = 2.950e-43
Identity = 80/162 (49.38%), Postives = 111/162 (68.52%), Query Frame = 0
Query:  174 DCLLTRVKLRWPEARHVHRLDQGTSGVMVMALTPEAAKELSRQFRERVTSKTYIAVLEGRMAKSPKSGTVVAKIRPDLNDRPRQIVDEKNGNAAETRWELLSREADRSVVNFTPVTGRTHQIRMHALSLGHPIMGDSLYGTEEGKAKSERLLLHATRLGFVH 335
            DCL +R +  +P AR VHRLD+ TSGV+VMA   +  +ELSRQF +R   K Y AV+ GR+A     G + A +R DL+D PRQI+D++ G +A+T + ++ R  DR+ +  +PVTGR+HQ+R+H +S+GHPI+GD LY T E  + S RLLLHAT L   H
Sbjct:   53 DCLASRAEAAFPGARIVHRLDRDTSGVIVMARDADTHRELSRQFHDREVDKQYEAVVGGRLAVD--DGVIDAPMRKDLDDPPRQIIDDEQGRSAKTGFRVIERMDDRTRMELSPVTGRSHQLRVHMMSIGHPILGDDLYATPELLSMSRRLLLHATLLTITH 212          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6672.14558.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4R0_ECTSI4.990e-14267.22Ribosomal large subunit pseudouridine synthase A n... [more]
A0A1H9I0B1_9GAMM1.230e-4451.23Pseudouridine synthase n=1 Tax=Amphritea atlantica... [more]
A0A2Z4UKY3_9HYPH6.490e-4450.00Ribosomal large subunit pseudouridine synthase A n... [more]
A0A2E0XYT5_9BACT1.020e-4347.53Pseudouridine synthase n=1 Tax=Phycisphaerae bacte... [more]
A0A7W2BME3_9HYPH1.090e-4349.38RNA pseudouridine synthase n=1 Tax=Hyphomicrobiale... [more]
A0A6N0HZW1_9GAMM1.200e-4350.00Pseudouridine synthase n=2 Tax=Gammaproteobacteria... [more]
UPI001A8EBC931.600e-4349.38pseudouridine synthase n=1 Tax=Motiliproteus sp. S... [more]
A0A1G3AV14_9BACT1.920e-4347.78Pseudouridine synthase n=2 Tax=unclassified Planct... [more]
A0A2E8J4A8_9GAMM2.270e-4346.30Pseudouridine synthase n=1 Tax=Gammaproteobacteria... [more]
A0A2D5B3Y4_9BACT2.950e-4349.38RNA pseudouridine synthase n=1 Tax=Phycisphaerae b... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.2350.10coord: 160..337
e-value: 4.9E-52
score: 178.6
NoneNo IPR availablePANTHERPTHR21600RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 35..90
coord: 173..335
NoneNo IPR availablePANTHERPTHR21600:SF43RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Acoord: 35..90
coord: 173..335
IPR006145Pseudouridine synthase, RsuA/RluAPFAMPF00849PseudoU_synth_2coord: 186..299
e-value: 1.2E-26
score: 93.7
IPR006224Pseudouridine synthase, RluC/RluD, conserved sitePROSITEPS01129PSI_RLUcoord: 190..204
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 170..335

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6672contigH-paniculata_contig6672:7229..12076 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6672.14558.1mRNA_H-paniculata_contig6672.14558.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig6672 7069..12076 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig6672.14558.1 ID=prot_H-paniculata_contig6672.14558.1|Name=mRNA_H-paniculata_contig6672.14558.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=338bp
MSDVDESVGEVSQSSKTAGVRGSPSAQPEGTATAISSDLKVLYSDEDIVV
LDKPPGLRTVPGSIKSTEGSKSINRAQTEWHSGNKRSRQDFWIDVVHKAC
NSMLEDEQIAGNTELQGHLQRLTRENNVPRKRSKFANYAAVTLGLHGEEG
EAISSRIWNAVDSRLKVEAGPGTDCLLTRVKLRWPEARHVHRLDQGTSGV
MVMALTPEAAKELSRQFRERVTSKTYIAVLEGRMAKSPKSGTVVAKIRPD
LNDRPRQIVDEKNGNAAETRWELLSREADRSVVNFTPVTGRTHQIRMHAL
SLGHPIMGDSLYGTEEGKAKSERLLLHATRLGFVHVSL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006145PsdUridine_synth_RsuA/RluA
IPR006224PsdUridine_synth_RluC/D_CS
IPR020103PsdUridine_synth_cat_dom_sf