mRNA_H-paniculata_contig66705.14556.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig66705.14556.1
Unique NamemRNA_H-paniculata_contig66705.14556.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig66705.14556.1 vs. uniprot
Match: A0A6H5KUL3_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KUL3_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 5.660e-14
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 LTPENVEAVVKDEGTDVMIEFYAPWCGHCQQLQPVYAEVAEQVS 132
            LT +N + VVK EGTDVM+EFYAPWCGHC+ L+PVY EVA +VS
Sbjct:  345 LTSDNFDEVVKAEGTDVMLEFYAPWCGHCKSLKPVYNEVANEVS 388
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BLAST of mRNA_H-paniculata_contig66705.14556.1 vs. uniprot
Match: A0A022RDI3_ERYGU (Uncharacterized protein (Fragment) n=3 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022RDI3_ERYGU)

HSP 1 Score: 67.4 bits (163), Expect = 2.290e-12
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 LTPENVEAVVKDEGTDVMIEFYAPWCGHCQQLQPVYAEVA 120
            LTPEN E +V DE  DV++EFYAPWCGHC+ L PVY +VA
Sbjct:  147 LTPENFEEIVLDENKDVLVEFYAPWCGHCKNLAPVYEKVA 186
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BLAST of mRNA_H-paniculata_contig66705.14556.1 vs. uniprot
Match: A0A1J3JHX7_NOCCA (Protein disulfide isomerase-like 2-2 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3JHX7_NOCCA)

HSP 1 Score: 68.6 bits (166), Expect = 2.850e-12
Identity = 25/45 (55.56%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 LTPENVEAVVKDEGTDVMIEFYAPWCGHCQQLQPVYAEVAEQVSG 135
            LTP+N +++VKD   DV++EFYAPWCGHC++L+P Y +VA+   G
Sbjct:  144 LTPDNFDSIVKDSSKDVLVEFYAPWCGHCKRLEPEYEKVAKSFEG 188
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BLAST of mRNA_H-paniculata_contig66705.14556.1 vs. uniprot
Match: A0A0R4IBZ3_DANRE (Protein disulfide-isomerase (Fragment) n=1 Tax=Danio rerio TaxID=7955 RepID=A0A0R4IBZ3_DANRE)

HSP 1 Score: 64.3 bits (155), Expect = 3.110e-12
Identity = 24/44 (54.55%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 LTPENVEAVVKDEGTDVMIEFYAPWCGHCQQLQPVYAEVAEQVS 132
            L  EN +++V D+  DV+IEFYAPWCGHC+ L+P Y E+ E++S
Sbjct:    2 LVAENFDSIVNDDSKDVLIEFYAPWCGHCKSLEPKYKELGEKLS 45
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BLAST of mRNA_H-paniculata_contig66705.14556.1 vs. uniprot
Match: A0A3P9NG78_POERE (Protein disulfide isomerase family A, member 3 n=1 Tax=Poecilia reticulata TaxID=8081 RepID=A0A3P9NG78_POERE)

HSP 1 Score: 64.7 bits (156), Expect = 4.320e-12
Identity = 24/43 (55.81%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   10 ENVEAVVKDEGTDVMIEFYAPWCGHCQQLQPVYAEVAEQVSGF 138
            EN +++V D+  DV+IEFYAPWCGHC+ L+P Y E+ E+V+ F
Sbjct:   43 ENFDSIVNDDSKDVLIEFYAPWCGHCKNLEPKYKELGEKVNRF 85
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BLAST of mRNA_H-paniculata_contig66705.14556.1 vs. uniprot
Match: A0A8C6WRH4_9GOBI (Thioredoxin domain-containing protein n=1 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6WRH4_9GOBI)

HSP 1 Score: 65.5 bits (158), Expect = 5.650e-12
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 LTPENVEAVVKDEGTDVMIEFYAPWCGHCQQLQPVYAEVAEQVSG 135
            L  EN +++V D+  DV+IEFYAPWCGHC+ L+P Y E+ E +SG
Sbjct:   44 LVAENFDSIVNDDSKDVLIEFYAPWCGHCKSLEPKYKELGEGLSG 88
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BLAST of mRNA_H-paniculata_contig66705.14556.1 vs. uniprot
Match: A0A6P6LIG9_CARAU (Protein disulfide-isomerase n=1 Tax=Carassius auratus TaxID=7957 RepID=A0A6P6LIG9_CARAU)

HSP 1 Score: 67.0 bits (162), Expect = 1.040e-11
Identity = 24/42 (57.14%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   10 ENVEAVVKDEGTDVMIEFYAPWCGHCQQLQPVYAEVAEQVSG 135
            +  + +V D G DV++EFYAPWCGHCQ L+P+Y E+ EQ+SG
Sbjct:  254 DTFDEIVNDPGKDVLVEFYAPWCGHCQDLEPIYKELGEQLSG 295
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BLAST of mRNA_H-paniculata_contig66705.14556.1 vs. uniprot
Match: A0A8C2Q4P8_CYPCA (Protein disulfide-isomerase n=2 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2Q4P8_CYPCA)

HSP 1 Score: 67.0 bits (162), Expect = 1.100e-11
Identity = 25/45 (55.56%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 LTPENVEAVVKDEGTDVMIEFYAPWCGHCQQLQPVYAEVAEQVSG 135
            +  EN +++V DE  DV+IEFYAPWCGHC+ L+P Y E+ E++SG
Sbjct:  279 IVAENFDSIVNDESKDVLIEFYAPWCGHCKSLEPKYKELGEKLSG 323
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BLAST of mRNA_H-paniculata_contig66705.14556.1 vs. uniprot
Match: A0A6P6LKY3_CARAU (Protein disulfide-isomerase n=1 Tax=Carassius auratus TaxID=7957 RepID=A0A6P6LKY3_CARAU)

HSP 1 Score: 67.0 bits (162), Expect = 1.170e-11
Identity = 24/42 (57.14%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   10 ENVEAVVKDEGTDVMIEFYAPWCGHCQQLQPVYAEVAEQVSG 135
            +  + +V D G DV++EFYAPWCGHCQ L+P+Y E+ EQ+SG
Sbjct:  373 DTFDEIVNDPGKDVLVEFYAPWCGHCQDLEPIYKELGEQLSG 414
[Close]
BLAST of mRNA_H-paniculata_contig66705.14556.1 vs. uniprot
Match: A0A8C1PHI2_CYPCA (Protein disulfide-isomerase n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1PHI2_CYPCA)

HSP 1 Score: 67.0 bits (162), Expect = 1.170e-11
Identity = 25/45 (55.56%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 LTPENVEAVVKDEGTDVMIEFYAPWCGHCQQLQPVYAEVAEQVSG 135
            +  EN +++V DE  DV+IEFYAPWCGHC+ L+P Y E+ E++SG
Sbjct:  362 IVAENFDSIVNDESKDVLIEFYAPWCGHCKSLEPKYKELGEKLSG 406
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig66705.14556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUL3_9PHAE5.660e-1470.45Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A022RDI3_ERYGU2.290e-1267.50Uncharacterized protein (Fragment) n=3 Tax=Erythra... [more]
A0A1J3JHX7_NOCCA2.850e-1255.56Protein disulfide isomerase-like 2-2 (Fragment) n=... [more]
A0A0R4IBZ3_DANRE3.110e-1254.55Protein disulfide-isomerase (Fragment) n=1 Tax=Dan... [more]
A0A3P9NG78_POERE4.320e-1255.81Protein disulfide isomerase family A, member 3 n=1... [more]
A0A8C6WRH4_9GOBI5.650e-1255.56Thioredoxin domain-containing protein n=1 Tax=Neog... [more]
A0A6P6LIG9_CARAU1.040e-1157.14Protein disulfide-isomerase n=1 Tax=Carassius aura... [more]
A0A8C2Q4P8_CYPCA1.100e-1155.56Protein disulfide-isomerase n=2 Tax=Cyprinus carpi... [more]
A0A6P6LKY3_CARAU1.170e-1157.14Protein disulfide-isomerase n=1 Tax=Carassius aura... [more]
A0A8C1PHI2_CYPCA1.170e-1155.56Protein disulfide-isomerase n=1 Tax=Cyprinus carpi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig66705contigH-paniculata_contig66705:214..369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue3.7e-12
Seed eggNOG ortholog2880.D8LM96
Preferred namePDIA3
KEGG koko:K08056
KEGG Pathwayko04141,ko04612,map04141,map04612
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0001666,GO:0001669,GO:0002376,GO:0002474,GO:0002478,GO:0002479,GO:0002931,GO:0003006,GO:0003674,GO:0003756,GO:0003810,GO:0003824,GO:0004175,GO:0004197,GO:0004620,GO:0004629,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005768,GO:0005783,GO:0005788,GO:0005789,GO:0005790,GO:0005886,GO:0006457,GO:0006464,GO:0006508,GO:0006807,GO:0006950,GO:0007154,GO:0007275,GO:0007423,GO:0007548,GO:0007584,GO:0007610,GO:0007623,GO:0008081,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008360,GO:0009605,GO:0009628,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009887,GO:0009966,GO:0009967,GO:0009986,GO:0009987,GO:0009991,GO:0010008,GO:0010033,GO:0010171,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0012505,GO:0014070,GO:0015036,GO:0015037,GO:0016020,GO:0016021,GO:0016298,GO:0016324,GO:0016491,GO:0016667,GO:0016671,GO:0016740,GO:0016746,GO:0016755,GO:0016787,GO:0016788,GO:0016853,GO:0016860,GO:0016864,GO:0018149,GO:0018991,GO:0019098,GO:0019153,GO:0019538,GO:0019882,GO:0019884,GO:0022414,GO:0022603,GO:0022604,GO:0023051,GO:0023056,GO:0030139,GO:0030141,GO:0030176,GO:0030539,GO:0031090,GO:0031224,GO:0031227,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033273,GO:0033280,GO:0033554,GO:0033594,GO:0033595,GO:0033993,GO:0034975,GO:0034976,GO:0035112,GO:0036211,GO:0036293,GO:0036296,GO:0040002,GO:0040019,GO:0042175,GO:0042221,GO:0042287,GO:0042288,GO:0042335,GO:0042493,GO:0042578,GO:0042590,GO:0042802,GO:0042824,GO:0042825,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044321,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044432,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045138,GO:0045177,GO:0045335,GO:0045471,GO:0045995,GO:0046661,GO:0046677,GO:0048002,GO:0048511,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048608,GO:0048609,GO:0048731,GO:0048806,GO:0048808,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051239,GO:0051240,GO:0051716,GO:0055037,GO:0055038,GO:0055093,GO:0055114,GO:0061458,GO:0065007,GO:0065008,GO:0070011,GO:0070013,GO:0070482,GO:0070848,GO:0070887,GO:0071295,GO:0071305,GO:0071310,GO:0071363,GO:0071396,GO:0071407,GO:0071495,GO:0071496,GO:0071559,GO:0071560,GO:0071704,GO:0071944,GO:0080058,GO:0080184,GO:0090596,GO:0090597,GO:0090598,GO:0097223,GO:0097305,GO:0097327,GO:0097708,GO:0098588,GO:0098590,GO:0098796,GO:0098805,GO:0098827,GO:0099503,GO:0140096,GO:1901423,GO:1901564,GO:1901654,GO:1901700,GO:1901701,GO:1903332,GO:1903334,GO:1904147,GO:1904148,GO:2000026,GO:2001233,GO:2001235,GO:2001236,GO:2001238
EggNOG free text desc.intramolecular oxidoreductase activity, transposing S-S bonds
EggNOG OGsCOG0526@1,KOG0190@2759
Ec32 ortholog descriptionProtein Disulfide Isomerase (putive Transglutaminase bifunctional protein)
Ec32 orthologEc-05_001990.1
EC5.3.4.1
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110,ko04131,ko04147
Exons1
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930788.6978402-CDS-H-paniculata_contig66705:213..3691622930788.6978402-CDS-H-paniculata_contig66705:213..369Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig66705 214..369 +
1691481452.6674786-CDS-H-paniculata_contig66705:213..3691691481452.6674786-CDS-H-paniculata_contig66705:213..369Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig66705 214..369 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig66705.14556.1prot_H-paniculata_contig66705.14556.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig66705 214..369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig66705.14556.1

>prot_H-paniculata_contig66705.14556.1 ID=prot_H-paniculata_contig66705.14556.1|Name=mRNA_H-paniculata_contig66705.14556.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
LTPENVEAVVKDEGTDVMIEFYAPWCGHCQQLQPVYAEVAEQVSGFLRAY
I*
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mRNA from alignment at H-paniculata_contig66705:214..369+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig66705.14556.1 ID=mRNA_H-paniculata_contig66705.14556.1|Name=mRNA_H-paniculata_contig66705.14556.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at H-paniculata_contig66705:214..369+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTACCCCTGAAAACGTTGAAGCAGTTGTCAAGGACGAAGGCACGGACGT
GATGATTGAGTTTTACGCGCCGTGGTGCGGTCACTGCCAGCAGCTGCAGC
CTGTCTACGCTGAGGTTGCCGAGCAGGTGAGTGGATTTTTACGTGCATAT
ATATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig66705:214..369+

>mRNA_H-paniculata_contig66705.14556.1 ID=mRNA_H-paniculata_contig66705.14556.1|Name=mRNA_H-paniculata_contig66705.14556.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig66705:214..369+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTACCCCTGAAAACGTTGAAGCAGTTGTCAAGGACGAAGGCACGGACGT
GATGATTGAGTTTTACGCGCCGTGGTGCGGTCACTGCCAGCAGCTGCAGC
CTGTCTACGCTGAGGTTGCCGAGCAGGTGAGTGGATTTTTACGTGCATAT
ATATAACTTACCCCTGAAAACGTTGAAGCAGTTGTCAAGGACGAAGGCAC
GGACGTGATGATTGAGTTTTACGCGCCGTGGTGCGGTCACTGCCAGCAGC
TGCAGCCTGTCTACGCTGAGGTTGCCGAGCAGGTGAGTGGATTTTTACGT
GCATATATATAA
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