prot_H-paniculata_contig6605.14481.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig6605.14481.1
Unique Nameprot_H-paniculata_contig6605.14481.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length83
Homology
BLAST of mRNA_H-paniculata_contig6605.14481.1 vs. uniprot
Match: D7G312_ECTSI (50S ribosomal protein L28 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G312_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 6.150e-42
Identity = 70/82 (85.37%), Postives = 76/82 (92.68%), Query Frame = 0
Query:    1 MRARNCDLLGKTPNRKARVVTFSHKRIHKVQHVNLQKRKFFWEEGNRWVRLRLSTKGIKTIDKYGLHRAAKKFDLDLAKFTA 82
            MRARNCDLLGK PNRKARVVTFSHKRIHKVQH+NLQ RK +WEEG R+VRLRLSTK IKTIDKYGL++AAKKF+LDL KFTA
Sbjct:   48 MRARNCDLLGKKPNRKARVVTFSHKRIHKVQHLNLQWRKMYWEEGKRFVRLRLSTKAIKTIDKYGLNKAAKKFNLDLVKFTA 129          
BLAST of mRNA_H-paniculata_contig6605.14481.1 vs. uniprot
Match: A0A1Z5K4G8_FISSO (Large subunit ribosomal protein L28 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K4G8_FISSO)

HSP 1 Score: 115 bits (288), Expect = 1.590e-31
Identity = 63/81 (77.78%), Postives = 71/81 (87.65%), Query Frame = 0
Query:    1 MRARNCDLLGKTPNRKARVVTFSHKRIHKVQHVNLQKRKFFWEEGNRWVRLRLSTKGIKTIDKYG-LHRAAKKFDLDLAKF 80
            MRAR CDLLGKTPNR+ARVVTFSHKR  KVQ VNLQ ++FF EE NR VRLRLSTKGIKT++KYG + +AAKKF+LDLAKF
Sbjct:   42 MRARVCDLLGKTPNRQARVVTFSHKRNKKVQEVNLQWKRFFSEELNRNVRLRLSTKGIKTVNKYGSIDKAAKKFELDLAKF 122          
BLAST of mRNA_H-paniculata_contig6605.14481.1 vs. uniprot
Match: A0A7R9U9Q4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9Q4_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.790e-30
Identity = 56/80 (70.00%), Postives = 67/80 (83.75%), Query Frame = 0
Query:    1 MRARNCDLLGKTPNRKARVVTFSHKRIHKVQHVNLQKRKFFWEEGNRWVRLRLSTKGIKTIDKYGLHRAAKKFDLDLAKF 80
            MRARNCDL GK PNR A VVTFSHKR   VQ+VNLQ R+F+WEEG+R+VR+R+STK IKTI KYGL  +AKK+ +DL+KF
Sbjct:  104 MRARNCDLTGKRPNRDAMVVTFSHKRNKTVQYVNLQNRRFWWEEGSRYVRMRVSTKAIKTIKKYGLEESAKKYGVDLSKF 183          
BLAST of mRNA_H-paniculata_contig6605.14481.1 vs. uniprot
Match: A0A7S1E3X3_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E3X3_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.070e-29
Identity = 59/81 (72.84%), Postives = 68/81 (83.95%), Query Frame = 0
Query:    1 MRARNCDLLGKTPNRKARVVTFSHKRIHKVQHVNLQKRKFFWEEGNRWVRLRLSTKGIKTIDKY-GLHRAAKKFDLDLAKF 80
            MRAR CDL GK PNR+ARVVTFSHKRI KVQHVNLQK+KF+ EE  R V+LR+STKGIKT+ KY G+  AAKKF +DL+KF
Sbjct:   53 MRARICDLTGKRPNRQARVVTFSHKRIKKVQHVNLQKKKFYSEELGRNVKLRISTKGIKTVTKYNGIDAAAKKFGVDLSKF 133          
BLAST of mRNA_H-paniculata_contig6605.14481.1 vs. uniprot
Match: A0A7S2RVK4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVK4_9STRA)

HSP 1 Score: 109 bits (273), Expect = 7.520e-29
Identity = 53/80 (66.25%), Postives = 66/80 (82.50%), Query Frame = 0
Query:    1 MRARNCDLLGKTPNRKARVVTFSHKRIHKVQHVNLQKRKFFWEEGNRWVRLRLSTKGIKTIDKYGLHRAAKKFDLDLAKF 80
            MRAR CDL GK PNR+A  VTFSHKR  KVQ VNLQK+K +W EG+R+V LR+STKG++T++KYG+ +AAKK+ LDLA F
Sbjct:   75 MRARFCDLTGKRPNRQAMAVTFSHKRNKKVQAVNLQKKKLWWPEGDRYVTLRISTKGLRTVEKYGIDKAAKKYGLDLASF 154          
BLAST of mRNA_H-paniculata_contig6605.14481.1 vs. uniprot
Match: A0A448ZBR3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZBR3_9STRA)

HSP 1 Score: 108 bits (270), Expect = 8.940e-29
Identity = 59/81 (72.84%), Postives = 67/81 (82.72%), Query Frame = 0
Query:    1 MRARNCDLLGKTPNRKARVVTFSHKRIHKVQHVNLQKRKFFWEEGNRWVRLRLSTKGIKTIDKYG-LHRAAKKFDLDLAKF 80
            MRAR CDLLGK  NRKARVVTFSHKRIHKVQ VNLQ ++FF EE +R V+LRLSTKGIKT++K G +  AAKKF +DL KF
Sbjct:   43 MRARECDLLGKKANRKARVVTFSHKRIHKVQEVNLQTKRFFSEELDRKVKLRLSTKGIKTVNKLGGIDAAAKKFKVDLKKF 123          
BLAST of mRNA_H-paniculata_contig6605.14481.1 vs. uniprot
Match: A0A7S3NJI8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJI8_9STRA)

HSP 1 Score: 107 bits (266), Expect = 3.330e-28
Identity = 51/81 (62.96%), Postives = 64/81 (79.01%), Query Frame = 0
Query:    1 MRARNCDLLGKTPNRKARVVTFSHKRIHKVQHVNLQKRKFFWEEGNRWVRLRLSTKGIKTIDKYGLHRAAKKFDLDLAKFT 81
            M+ R CDL GK  N KA  VTFSH R HKVQ VNLQ RK +WEEGNR+V++R+STK +KTI KYG+ +AAKK+ +DLA+F+
Sbjct:   39 MKFRTCDLTGKRRNAKAMTVTFSHTRNHKVQKVNLQNRKLWWEEGNRYVKMRVSTKALKTIAKYGIDKAAKKYQIDLARFS 119          
BLAST of mRNA_H-paniculata_contig6605.14481.1 vs. uniprot
Match: A0A7S2A0S8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A0S8_TRICV)

HSP 1 Score: 107 bits (267), Expect = 6.110e-28
Identity = 57/81 (70.37%), Postives = 68/81 (83.95%), Query Frame = 0
Query:    1 MRARNCDLLGKTPNRKARVVTFSHKRIHKVQHVNLQKRKFFWEEGNRWVRLRLSTKGIKTIDKYG-LHRAAKKFDLDLAKF 80
            MRAR CDLLGK PNR+ARVVTFSHKR  KVQHVNLQ +KF+ ++  R V+LRLSTKGIKT+DKYG +  AA+KF L+L+KF
Sbjct:   74 MRARVCDLLGKKPNRQARVVTFSHKRNKKVQHVNLQVKKFYSDDLGRTVKLRLSTKGIKTVDKYGGIDAAARKFGLELSKF 154          
BLAST of mRNA_H-paniculata_contig6605.14481.1 vs. uniprot
Match: B5YNJ8_THAPS (RK28, ribosomal protein 28, 50S large ribosomal subunit, chloroplast (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YNJ8_THAPS)

HSP 1 Score: 104 bits (260), Expect = 7.990e-28
Identity = 56/77 (72.73%), Postives = 65/77 (84.42%), Query Frame = 0
Query:    4 RNCDLLGKTPNRKARVVTFSHKRIHKVQHVNLQKRKFFWEEGNRWVRLRLSTKGIKTIDKYG-LHRAAKKFDLDLAK 79
            R CDLLGKT NRKARVVTFSHKRIHKVQ VNLQ ++F+ ++  R VRLRLSTKGIKT++KYG +  AAKKF +DLAK
Sbjct:    1 RACDLLGKTANRKARVVTFSHKRIHKVQQVNLQWKRFYSDDLGRQVRLRLSTKGIKTVNKYGSIDAAAKKFGVDLAK 77          
BLAST of mRNA_H-paniculata_contig6605.14481.1 vs. uniprot
Match: A0A7S3L8H6_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L8H6_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.070e-27
Identity = 58/81 (71.60%), Postives = 68/81 (83.95%), Query Frame = 0
Query:    1 MRARNCDLLGKTPNRKARVVTFSHKRIHKVQHVNLQKRKFFWEEGNRWVRLRLSTKGIKTIDKYG-LHRAAKKFDLDLAKF 80
            MRAR CDLLGK PNR+ARVVTFSH+RI KVQ VNLQ ++FF E+ NR VRLRLSTKGIKT++K G +  AAKKF++DL KF
Sbjct:   44 MRARVCDLLGKKPNRQARVVTFSHRRIKKVQEVNLQWKRFFSEDLNRNVRLRLSTKGIKTVNKMGGIDAAAKKFEVDLNKF 124          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6605.14481.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G312_ECTSI6.150e-4285.3750S ribosomal protein L28 n=2 Tax=Ectocarpus TaxID... [more]
A0A1Z5K4G8_FISSO1.590e-3177.78Large subunit ribosomal protein L28 n=2 Tax=Fistul... [more]
A0A7R9U9Q4_9STRA1.790e-3070.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1E3X3_9STRA2.070e-2972.84Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S2RVK4_9STRA7.520e-2966.25Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A448ZBR3_9STRA8.940e-2972.84Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S3NJI8_9STRA3.330e-2862.96Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2A0S8_TRICV6.110e-2870.37Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
B5YNJ8_THAPS7.990e-2872.73RK28, ribosomal protein 28, 50S large ribosomal su... [more]
A0A7S3L8H6_9STRA1.070e-2771.60Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037147Ribosomal protein L28/L24 superfamilyGENE3D2.30.170.40coord: 3..80
e-value: 1.6E-21
score: 78.1
IPR026569Ribosomal protein L28/L24PFAMPF00830Ribosomal_L28coord: 4..63
e-value: 1.1E-16
score: 60.7
IPR026569Ribosomal protein L28/L24PANTHERPTHR1352839S RIBOSOMAL PROTEIN L28, MITOCHONDRIALcoord: 3..79
IPR001383Ribosomal protein L28TIGRFAMTIGR00009TIGR00009coord: 3..60
e-value: 1.2E-13
score: 49.3
NoneNo IPR availablePANTHERPTHR13528:SF8coord: 3..79
IPR034704L28p-likeSUPERFAMILY143800L28p-likecoord: 3..79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6605contigH-paniculata_contig6605:8429..10311 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6605.14481.1mRNA_H-paniculata_contig6605.14481.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig6605 7319..10392 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig6605.14481.1 ID=prot_H-paniculata_contig6605.14481.1|Name=mRNA_H-paniculata_contig6605.14481.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
MRARNCDLLGKTPNRKARVVTFSHKRIHKVQHVNLQKRKFFWEEGNRWVR
LRLSTKGIKTIDKYGLHRAAKKFDLDLAKFTA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037147Ribo_L28/L24_sf
IPR026569Ribo_L28/L24
IPR001383Ribosomal_L28
IPR034704L28p-like