mRNA_H-paniculata_contig6604.14480.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6604.14480.1
Unique NamemRNA_H-paniculata_contig6604.14480.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6604.14480.1 vs. uniprot
Match: D8LF69_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF69_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.800e-9
Identity = 39/85 (45.88%), Postives = 47/85 (55.29%), Query Frame = 1
Query:    1 MLRFAVSKIVPVTLRQQRTVARAYAPAA--QTAFRTFATTKPPAAPEAEEGVVRAKVWDSLEWTLTSPPPVHQFDEPPIIVEISE 249
            MLRFAVSK+  V LR   + A   AP A                       VV+  + DSLEW L+SPPP+HQFDEPPI+VEI+E
Sbjct:    1 MLRFAVSKVATVALRPAVSAA---APRAVXXXXXXXXXXXXXXXXXXXXXXVVKVVLADSLEWALSSPPPIHQFDEPPIVVEIAE 82          
BLAST of mRNA_H-paniculata_contig6604.14480.1 vs. uniprot
Match: A0A4D9CUY8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUY8_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 6.660e-9
Identity = 30/50 (60.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query:  103 FATTKPPAAPEAEEGVVRAK-VWDSLEWTLTSPPPVHQFDEPPIIVEISE 249
            F     P A E   G V+   V DSLEWTL+SPPP+HQFDEPPIIVE  E
Sbjct:   73 FTGKNAPTAEEYSSGTVKVPIVVDSLEWTLSSPPPLHQFDEPPIIVEFPE 122          
BLAST of mRNA_H-paniculata_contig6604.14480.1 vs. uniprot
Match: A0A835Z9C3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9C3_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.240e-8
Identity = 25/37 (67.57%), Postives = 32/37 (86.49%), Query Frame = 1
Query:  142 EGVVRAKVWDSLEWTLTSPPPVHQFDEPPIIVEISEV 252
            E VV  +V+DSLEWTL+SPPP+HQF+EPPIIVE + +
Sbjct:   41 EIVVVDEVFDSLEWTLSSPPPIHQFEEPPIIVETAHL 77          
BLAST of mRNA_H-paniculata_contig6604.14480.1 vs. uniprot
Match: W7TKW3_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKW3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.490e-8
Identity = 30/50 (60.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query:  103 FATTKPPAAPEAEEGVVRAK-VWDSLEWTLTSPPPVHQFDEPPIIVEISE 249
            F     P A E   G V+   V DSLEWTL+SPPP+HQFDEPPIIVE  E
Sbjct:  116 FTGKNAPTAEEYSSGTVKVPIVVDSLEWTLSSPPPLHQFDEPPIIVEFPE 165          
BLAST of mRNA_H-paniculata_contig6604.14480.1 vs. uniprot
Match: A0A7R9YBE1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBE1_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.100e-8
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 1
Query:  133 EAEEGVVRAKVWDSLEWTLTSPPPVHQFDEPPIIVE 240
            E E+GV    ++D+LEWTLTSPPP HQF+EPPIIVE
Sbjct:   87 EREDGVRIPMLFDTLEWTLTSPPPFHQFEEPPIIVE 122          
BLAST of mRNA_H-paniculata_contig6604.14480.1 vs. uniprot
Match: A0A6U3NUB7_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3NUB7_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.110e-7
Identity = 23/37 (62.16%), Postives = 30/37 (81.08%), Query Frame = 1
Query:  142 EGVVRAKVWDSLEWTLTSPPPVHQFDEPPIIVEISEV 252
            E VV   + DSLEWTL+SPPP+HQF+EPP+IVE+  +
Sbjct:   39 ENVVVPLITDSLEWTLSSPPPLHQFEEPPLIVEVEHL 75          
BLAST of mRNA_H-paniculata_contig6604.14480.1 vs. uniprot
Match: A0A7S2SKS7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKS7_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.130e-7
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 1
Query:   88 TAFRTFATTKPPAAPEAEEGVVRAKVWDSLEWTLTSPPPVHQFDEPPIIVE 240
            TA R+FA     A PE E  +V   + DSLEWTL+SPPP+HQF+EPP+IVE
Sbjct:   48 TAIRSFA-----ALPEGENVIVPL-ITDSLEWTLSSPPPLHQFEEPPLIVE 92          
BLAST of mRNA_H-paniculata_contig6604.14480.1 vs. uniprot
Match: A0A7S2WGT9_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WGT9_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.150e-7
Identity = 23/37 (62.16%), Postives = 30/37 (81.08%), Query Frame = 1
Query:  142 EGVVRAKVWDSLEWTLTSPPPVHQFDEPPIIVEISEV 252
            E V+   V DSLEWTL+SPPP+HQF+EPP+IVE+  +
Sbjct:   39 ENVIVPLVTDSLEWTLSSPPPLHQFEEPPLIVEVDHL 75          
BLAST of mRNA_H-paniculata_contig6604.14480.1 vs. uniprot
Match: A0A7S4NEF5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NEF5_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.710e-7
Identity = 36/81 (44.44%), Postives = 43/81 (53.09%), Query Frame = 1
Query:   31 PVTLRQQRTVARAYAPAAQTAFRTFATTKPPAAPEAE-----------EGVVRAKVWDSLEWTLTSPPPVHQFDEPPIIVE 240
            P   RQ RT     + A + A R  A     +AP+A            E VV   + DSLEWTL+SPPP+HQF EPPIIVE
Sbjct:   29 PTQSRQSRTKGTMLSNAIRQAARPAALRIASSAPKATVARAFSTLPEGENVVVPLITDSLEWTLSSPPPLHQFTEPPIIVE 109          
BLAST of mRNA_H-paniculata_contig6604.14480.1 vs. uniprot
Match: A0A2D4BXS7_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXS7_PYTIN)

HSP 1 Score: 52.0 bits (123), Expect = 6.530e-7
Identity = 30/67 (44.78%), Postives = 41/67 (61.19%), Query Frame = 1
Query:   40 LRQQRTVARAYAPAAQTAFRTFATTKPPAAPEAEEGVVRAKVWDSLEWTLTSPPPVHQFDEPPIIVE 240
            L+  RT A A  PA   AF     +  P  PE ++ VV  ++  +LEW L+SPPP+HQF+E PI+VE
Sbjct:   11 LKTARTPAVALRPAQARAF-----SAAPTQPEHDDEVVIPELHQTLEWVLSSPPPLHQFEEAPIVVE 72          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6604.14480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF69_ECTSI1.800e-945.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9CUY8_9STRA6.660e-960.00Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A835Z9C3_9STRA1.240e-867.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TKW3_9STRA1.490e-860.00Uncharacterized protein n=2 Tax=Nannochloropsis ga... [more]
A0A7R9YBE1_9STRA3.100e-869.44Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6U3NUB7_9STRA1.110e-762.16Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2SKS7_9STRA1.130e-758.82Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2WGT9_9STRA1.150e-762.16Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S4NEF5_9STRA2.710e-744.44Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A2D4BXS7_PYTIN6.530e-744.78Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6604contigH-paniculata_contig6604:4005..4373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_001880.1
Exons2
Model size255
Cds size255
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930779.181189-CDS-H-paniculata_contig6604:4004..41181622930779.181189-CDS-H-paniculata_contig6604:4004..4118Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6604 4005..4118 -
1691481448.455329-CDS-H-paniculata_contig6604:4004..41181691481448.455329-CDS-H-paniculata_contig6604:4004..4118Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6604 4005..4118 -
1622930779.2060144-CDS-H-paniculata_contig6604:4232..43731622930779.2060144-CDS-H-paniculata_contig6604:4232..4373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6604 4233..4373 -
1691481448.4665062-CDS-H-paniculata_contig6604:4232..43731691481448.4665062-CDS-H-paniculata_contig6604:4232..4373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6604 4233..4373 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6604.14480.1prot_H-paniculata_contig6604.14480.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6604 4005..4373 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6604.14480.1

>prot_H-paniculata_contig6604.14480.1 ID=prot_H-paniculata_contig6604.14480.1|Name=mRNA_H-paniculata_contig6604.14480.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
MLRFAVSKIVPVTLRQQRTVARAYAPAAQTAFRTFATTKPPAAPEAEEGV
VRAKVWDSLEWTLTSPPPVHQFDEPPIIVEISEV*
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mRNA from alignment at H-paniculata_contig6604:4005..4373-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6604.14480.1 ID=mRNA_H-paniculata_contig6604.14480.1|Name=mRNA_H-paniculata_contig6604.14480.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=369bp|location=Sequence derived from alignment at H-paniculata_contig6604:4005..4373- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCCGTTTCGCTGTATCCAAGATCGTGCCTGTGACGCTGAGGCAACA GCGGACCGTAGCACGCGCTTACGCGCCCGCCGCTCAAACTGCCTTCCGCA CTTTCGCCACGACGAAGCCGCCAGCGGCGCCTGAGGCCGAGGTCGAGGAA AAGATTTTATCAGAGGAGGAACAGGCGTTGTTTGATGACGAGGTTGGGAA GCTATCCGAGCACGAACTCGATCAGCTAATGGGCGAGCCCGAGGAATTTA TTGAGGAAGGGGTCGTGCGTGCCAAGGTATGGGACTCGCTCGAGTGGACG CTGACCTCCCCGCCGCCGGTCCACCAGTTCGACGAGCCCCCGATCATTGT CGAGATTTCGGAAGTGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig6604:4005..4373-

>mRNA_H-paniculata_contig6604.14480.1 ID=mRNA_H-paniculata_contig6604.14480.1|Name=mRNA_H-paniculata_contig6604.14480.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig6604:4005..4373- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCCGTTTCGCTGTATCCAAGATCGTGCCTGTGACGCTGAGGCAACA
GCGGACCGTAGCACGCGCTTACGCGCCCGCCGCTCAAACTGCCTTCCGCA
CTTTCGCCACGACGAAGCCGCCAGCGGCGCCTGAGGCCGAGATGCTCCGT
TTCGCTGTATCCAAGATCGTGCCTGTGACGCTGAGGCAACAGCGGACCGT
AGCACGCGCTTACGCGCCCGCCGCTCAAACTGCCTTCCGCACTTTCGCCA
CGACGAAGCCGCCAGCGGCGCCTGAGGCCGAGGAAGGGGTCGTGCGTGCC
AAGGTATGGGACTCGCTCGAGTGGACGCTGACCTCCCCGCCGCCGGTCCA
CCAGTTCGACGAGCCCCCGATCATTGTCGAGATTTCGGAAGTGTGAGAAG
GGGTCGTGCGTGCCAAGGTATGGGACTCGCTCGAGTGGACGCTGACCTCC
CCGCCGCCGGTCCACCAGTTCGACGAGCCCCCGATCATTGTCGAGATTTC
GGAAGTGTGA
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