mRNA_H-paniculata_contig6602.14477.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6602.14477.1
Unique NamemRNA_H-paniculata_contig6602.14477.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6602.14477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6602contigH-paniculata_contig6602:5282..7913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size1966
Cds size1629
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6602.14477.1prot_H-paniculata_contig6602.14477.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6602 5294..7588 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930778.8893578-UTR-H-paniculata_contig6602:5281..52931622930778.8893578-UTR-H-paniculata_contig6602:5281..5293Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6602 5282..5293 +
1691481448.3235576-UTR-H-paniculata_contig6602:5281..52931691481448.3235576-UTR-H-paniculata_contig6602:5281..5293Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6602 5282..5293 +
1622930778.9414096-UTR-H-paniculata_contig6602:7588..79131622930778.9414096-UTR-H-paniculata_contig6602:7588..7913Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6602 7589..7913 +
1691481448.3538306-UTR-H-paniculata_contig6602:7588..79131691481448.3538306-UTR-H-paniculata_contig6602:7588..7913Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6602 7589..7913 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930778.908065-CDS-H-paniculata_contig6602:5293..65031622930778.908065-CDS-H-paniculata_contig6602:5293..6503Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6602 5294..6503 +
1691481448.3328161-CDS-H-paniculata_contig6602:5293..65031691481448.3328161-CDS-H-paniculata_contig6602:5293..6503Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6602 5294..6503 +
1622930778.9221084-CDS-H-paniculata_contig6602:7169..75881622930778.9221084-CDS-H-paniculata_contig6602:7169..7588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6602 7170..7588 +
1691481448.3451579-CDS-H-paniculata_contig6602:7169..75881691481448.3451579-CDS-H-paniculata_contig6602:7169..7588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6602 7170..7588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6602.14477.1

>prot_H-paniculata_contig6602.14477.1 ID=prot_H-paniculata_contig6602.14477.1|Name=mRNA_H-paniculata_contig6602.14477.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=543bp
MLLFAISCIGLFIYMTYARGRRVSVFGGLLSLEEDYSNSVRSSKPACTTN
PLFTRTLKTSTVSLKSKGFGGPKPRSKDGSKRSARVLAGEWTGDRRRTRN
TSKKTKSETGNAQKRARARNTSSRGDRGGENLRSNTRRNMAQSQSFATAD
TIAIAAETCSDGCGPTHSVSPPSDSRSPAALPTDPTASTAVHVAPGVPTP
ESPLGVSQNTADPRSPGTGKFAEVPGEDWAIGSADPAHHGRILVHLEEGL
ITPPPPAPPRTAPLPAPIIVPGDPLAPRIRIRERTSPKPLRGEGHHMSQG
KLQDQGIDWCSVGFAGSCSSIRSSGRVEPRVRSTPPGVRGSARTRSGSGP
TVVQSWQWRRSALGAVVDAPRTGREGPEADSDGLLFGLSNADALPPQLPA
NAKGPKTSKATMFTTPVRRRAGRFPRRTPTPENRGKRFTTSPHNRNSPAT
EAAKSAHLVTPHYNQDVGAASEAKFKGVLSTSISPRRSNSGSSMPSLTSL
NDDFMDSGDDALDTLHAAAAAAAAFESQPRLGIAQNVANRTE*
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mRNA from alignment at H-paniculata_contig6602:5282..7913+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6602.14477.1 ID=mRNA_H-paniculata_contig6602.14477.1|Name=mRNA_H-paniculata_contig6602.14477.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2632bp|location=Sequence derived from alignment at H-paniculata_contig6602:5282..7913+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGTCCTAATCATGCTGCTCTTCGCGATCAGCTGTATCGGACTGTTTAT
CTATATGACGTACGCCCGCGGCCGTCGAGTGTCCGTGTTCGGTGGACTGC
TGAGCCTGGAAGAAGACTATAGCAACTCCGTGCGATCGTCCAAACCTGCG
TGTACCACCAACCCGTTGTTCACGCGCACCCTCAAGACGTCTACTGTAAG
CTTAAAGAGCAAGGGATTCGGTGGTCCCAAGCCCCGGAGCAAAGATGGCA
GCAAAAGAAGCGCGCGTGTGTTGGCCGGAGAGTGGACTGGCGACCGCAGA
AGAACCAGAAACACCAGCAAAAAAACAAAAAGCGAAACCGGCAACGCGCA
AAAGAGGGCGCGTGCGAGGAACACTAGCAGCAGAGGCGACCGTGGGGGCG
AAAATCTCCGAAGTAATACCAGAAGAAACATGGCACAGAGCCAATCGTTC
GCCACGGCAGACACGATCGCCATTGCGGCCGAGACCTGTTCAGATGGCTG
CGGGCCAACTCATTCCGTTTCGCCGCCTTCCGACAGCCGTTCACCAGCAG
CGCTTCCCACCGATCCCACCGCATCCACCGCCGTGCACGTAGCTCCAGGC
GTGCCTACTCCCGAATCCCCTCTTGGAGTTTCTCAAAACACCGCCGACCC
CCGGTCACCAGGTACTGGCAAATTTGCTGAAGTCCCGGGTGAGGACTGGG
CGATCGGTAGCGCCGACCCAGCTCACCATGGACGGATACTCGTTCATCTG
GAAGAGGGCTTGATTACGCCGCCCCCCCCTGCGCCACCGCGCACCGCACC
TCTCCCAGCCCCAATAATCGTCCCCGGCGACCCCTTGGCCCCACGGATAC
GCATTCGCGAGAGGACCTCTCCAAAACCTTTGCGTGGTGAGGGTCACCAC
ATGAGCCAAGGCAAGCTTCAGGACCAGGGGATAGATTGGTGCTCAGTAGG
TTTTGCGGGGAGTTGTTCCTCGATACGATCGTCTGGACGCGTGGAACCTC
GGGTCCGCTCTACCCCACCAGGTGTACGTGGATCTGCGCGGACACGAAGC
GGCTCTGGACCCACGGTGGTACAGTCTTGGCAGTGGCGGCGTTCTGCCCT
GGGCGCGGTGGTGGATGCCCCGAGGACTGGAAGGGAAGGGCCCGAGGCGG
ATAGCGACGGGCTTTTGTTCGGCCTTTCGAATGCCGATGCTCTGCCGCCG
CAGTTACCTGCTAATGCGAAAGGTGGGACGCGATATGTTACTGTTGCTCT
TCCGTGTGCCTCAACACTGGCGAGTTTGCCATGTGTTGACGTATTTTGTG
TATTTTACCCCAACAGGCGGGTGGGCCAGAGGGACGTGCAGTAGAACCGT
GGCGAGATGCTGTTTCATGGATGGGGGGGGGCAATAGCGGAATGCCGGAG
GAATAGTTGTATCGTGTGGTTTCAGTGGATAACGTGTAGGTATTCTCCCT
CGCTAGGTGGTTGTAGTTGTATCGGGATGGCACCAGCCGTGAGGTGCGTA
TACACAGCGACGAAGATAAGGTGCGTATTTGAACTCAAGATGAGAAGAGA
GCGCTTACATAATTGGTTTTGTGGATGTGTGGGGTCGAACCTCCACAGCG
TGCGTTCTGGCCTTGAACAGGTAACACAGACCAAGCATGCCCACTACCCG
CAGACTCAGAAACACGACCGACGTATAACCTCGCTTCTACTCTTTGCCCA
CGAGTGTCGACGGGGCCGCACGGTACTTGCTATTCTCACTATAGGATGCA
CTGTGCTTCATAGGTCACGCAGAGCTTCAACTTAGCAACTGCAGAAAAAA
TACGCCACTTCCACGGTACATGCGCTGAAATCTGTACTCTAACTCTCTCA
CGCACGGCCCCACGGTACGCTCCTTTCTTGCACCGCAGGCCCGAAAACGT
CTAAGGCGACCATGTTTACCACCCCGGTCCGCAGACGTGCAGGCAGGTTC
CCCCGACGGACGCCCACGCCTGAAAACCGCGGGAAACGCTTCACTACGTC
CCCTCACAACAGGAACTCCCCAGCAACAGAAGCAGCTAAATCCGCACACC
TCGTCACGCCCCATTACAACCAGGACGTTGGGGCAGCAAGCGAGGCGAAG
TTTAAAGGAGTGCTCTCGACATCTATTTCCCCTCGTAGGTCCAACAGTGG
ATCGAGCATGCCTTCTCTTACATCGCTCAATGATGACTTTATGGACAGCG
GGGATGACGCACTGGATACACTGCATGCTGCTGCTGCTGCTGCTGCTGCG
TTTGAATCGCAGCCTCGTCTGGGTATTGCCCAAAACGTTGCCAATCGTAC
GGAGTGATATTTTGCGTGTGTTTGTTTAAGGTAGAAACTAACAAATAATA
GTGAACGCCACCTTCAAGCCCACGTCTGGTATTATTATCGTTAAAAAGAG
TAACAGATATATATATGCCGAGGCAATTCCGGTGGTGTGCCTCCCCTAGC
TCAGGTCCCCCTCGCCCATCTACAGAGTGGAAACACTCAGACCCCCTCGT
GACCATGACCATGTTAGCGTGCTATAGAATGGGGATATCAAAATCGTAAC
GTTTAACATTTTTGCACGCGTTAGTCAAAATTCGATTGTACTAGTTACGA
TGTCCAGATGTAGATGTTGCACTACGTATGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig6602:5282..7913+

>mRNA_H-paniculata_contig6602.14477.1 ID=mRNA_H-paniculata_contig6602.14477.1|Name=mRNA_H-paniculata_contig6602.14477.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3258bp|location=Sequence derived from alignment at H-paniculata_contig6602:5282..7913+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGCTCTTCGCGATCAGCTGTATCGGACTGTTTATCTATATGACGTA
CGCCCGCGGCCGTCGAGTGTCCGTGTTCGGTGGACTGCTGAGCCTGGAAG
AAGACTATAGCAACTCCGTGCGATCGTCCAAACCTGCGTGTACCACCAAC
CCGTTGTTCACGCGCACCCTCAAGACGTCTACTGTAAGCTTAAAGAGCAA
GGGATTCGGTGGTCCCAAGCCCCGGAGCAAAGATGGCAGCAAAAGAAGCG
CGCGTGTGTTGGCCGGAGAGTGGACTGGCGACCGCAGAAGAACCAGAAAC
ACCAGCAAAAAAACAAAAAGCGAAACCGGCAACGCGCAAAAGAGGGCGCG
TGCGAGGAACACTAGCAGCAGAGGCGACCGTGGGGGCGAAAATCTCCGAA
GTAATACCAGAAGAAACATGGCACAGAGCCAATCGTTCGCCACGGCAGAC
ACGATCGCCATTGCGGCCGAGACCTGTTCAGATGGCTGCGGGCCAACTCA
TTCCGTTTCGCCGCCTTCCGACAGCCGTTCACCAGCAGCGCTTCCCACCG
ATCCCACCGCATCCACCGCCGTGCACGTAGCTCCAGGCGTGCCTACTCCC
GAATCCCCTCTTGGAGTTTCTCAAAACACCGCCGACCCCCGGTCACCAGG
TACTGGCAAATTTGCTGAAGTCCCGGGTGAGGACTGGGCGATCGGTAGCG
CCGACCCAGCTCACCATGGACGGATACTCGTTCATCTGGAAGAGGGCTTG
ATTACGCCGCCCCCCCCTGCGCCACCGCGCACCGCACCTCTCCCAGCCCC
AATAATCGTCCCCGGCGACCCCTTGGCCCCACGGATACGCATTCGCGAGA
GGACCTCTCCAAAACCTTTGCGTGGTGAGGGTCACCACATGAGCCAAGGC
AAGCTTCAGGACCAGGGGATAGATTGGTGCTCAGTAGGTTTTGCGGGGAG
TTGTTCCTCGATACGATCGTCTGGACGCGTGGAACCTCGGGTCCGCTCTA
CCCCACCAGGTGTACGTGGATCTGCGCGGACACGAAGCGGCTCTGGACCC
ACGGTGGTACAGTCTTGGCAGTGGCGGCGTTCTGCCCTGGGCGCGGTGGT
GGATGCCCCGAGGACTGGAAGGGAAGGGCCCGAGGCGGATAGCGACGGGC
TTTTGTTCGGCCTTTCGAATGCCGATGCTCTGCCGCCGCAGTTACCTGCT
AATGCGAAAGATGCTGCTCTTCGCGATCAGCTGTATCGGACTGTTTATCT
ATATGACGTACGCCCGCGGCCGTCGAGTGTCCGTGTTCGGTGGACTGCTG
AGCCTGGAAGAAGACTATAGCAACTCCGTGCGATCGTCCAAACCTGCGTG
TACCACCAACCCGTTGTTCACGCGCACCCTCAAGACGTCTACTGTAAGCT
TAAAGAGCAAGGGATTCGGTGGTCCCAAGCCCCGGAGCAAAGATGGCAGC
AAAAGAAGCGCGCGTGTGTTGGCCGGAGAGTGGACTGGCGACCGCAGAAG
AACCAGAAACACCAGCAAAAAAACAAAAAGCGAAACCGGCAACGCGCAAA
AGAGGGCGCGTGCGAGGAACACTAGCAGCAGAGGCGACCGTGGGGGCGAA
AATCTCCGAAGTAATACCAGAAGAAACATGGCACAGAGCCAATCGTTCGC
CACGGCAGACACGATCGCCATTGCGGCCGAGACCTGTTCAGATGGCTGCG
GGCCAACTCATTCCGTTTCGCCGCCTTCCGACAGCCGTTCACCAGCAGCG
CTTCCCACCGATCCCACCGCATCCACCGCCGTGCACGTAGCTCCAGGCGT
GCCTACTCCCGAATCCCCTCTTGGAGTTTCTCAAAACACCGCCGACCCCC
GGTCACCAGGTACTGGCAAATTTGCTGAAGTCCCGGGTGAGGACTGGGCG
ATCGGTAGCGCCGACCCAGCTCACCATGGACGGATACTCGTTCATCTGGA
AGAGGGCTTGATTACGCCGCCCCCCCCTGCGCCACCGCGCACCGCACCTC
TCCCAGCCCCAATAATCGTCCCCGGCGACCCCTTGGCCCCACGGATACGC
ATTCGCGAGAGGACCTCTCCAAAACCTTTGCGTGGTGAGGGTCACCACAT
GAGCCAAGGCAAGCTTCAGGACCAGGGGATAGATTGGTGCTCAGTAGGTT
TTGCGGGGAGTTGTTCCTCGATACGATCGTCTGGACGCGTGGAACCTCGG
GTCCGCTCTACCCCACCAGGTGTACGTGGATCTGCGCGGACACGAAGCGG
CTCTGGACCCACGGTGGTACAGTCTTGGCAGTGGCGGCGTTCTGCCCTGG
GCGCGGTGGTGGATGCCCCGAGGACTGGAAGGGAAGGGCCCGAGGCGGAT
AGCGACGGGCTTTTGTTCGGCCTTTCGAATGCCGATGCTCTGCCGCCGCA
GTTACCTGCTAATGCGAAAGGCCCGAAAACGTCTAAGGCGACCATGTTTA
CCACCCCGGTCCGCAGACGTGCAGGCAGGTTCCCCCGACGGACGCCCACG
CCTGAAAACCGCGGGAAACGCTTCACTACGTCCCCTCACAACAGGAACTC
CCCAGCAACAGAAGCAGCTAAATCCGCACACCTCGTCACGCCCCATTACA
ACCAGGACGTTGGGGCAGCAAGCGAGGCGAAGTTTAAAGGAGTGCTCTCG
ACATCTATTTCCCCTCGTAGGTCCAACAGTGGATCGAGCATGCCTTCTCT
TACATCGCTCAATGATGACTTTATGGACAGCGGGGATGACGCACTGGATA
CACTGCATGCTGCTGCTGCTGCTGCTGCTGCGTTTGAATCGCAGCCTCGT
CTGGGTATTGCCCAAAACGTTGCCAATCGTACGGAGTGAGCCCGAAAACG
TCTAAGGCGACCATGTTTACCACCCCGGTCCGCAGACGTGCAGGCAGGTT
CCCCCGACGGACGCCCACGCCTGAAAACCGCGGGAAACGCTTCACTACGT
CCCCTCACAACAGGAACTCCCCAGCAACAGAAGCAGCTAAATCCGCACAC
CTCGTCACGCCCCATTACAACCAGGACGTTGGGGCAGCAAGCGAGGCGAA
GTTTAAAGGAGTGCTCTCGACATCTATTTCCCCTCGTAGGTCCAACAGTG
GATCGAGCATGCCTTCTCTTACATCGCTCAATGATGACTTTATGGACAGC
GGGGATGACGCACTGGATACACTGCATGCTGCTGCTGCTGCTGCTGCTGC
GTTTGAATCGCAGCCTCGTCTGGGTATTGCCCAAAACGTTGCCAATCGTA
CGGAGTGA
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