mRNA_H-paniculata_contig65996.14472.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig65996.14472.1
Unique NamemRNA_H-paniculata_contig65996.14472.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig65996.14472.1 vs. uniprot
Match: A0A6H5JL31_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL31_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 7.860e-6
Identity = 33/98 (33.67%), Postives = 55/98 (56.12%), Query Frame = 1 
Query:    4 LWLSVGENAV-PRVSAVMSKLATMVWEQIFSKTEPNPVQRVVLGGDNYQDCKMGDGASEHQARNGAGYVAELMRKHEKRCLVVADNVWELGVIEELKK 294
            LWLSVG+ A   R+  +++ LA MV+E +F K    P+++ V+G D+                + A Y+  L  +  +R LVVAD+VW+  V++EL++
Sbjct:   99 LWLSVGQRAGRDRLLELLTSLAGMVYETVFQK-RCRPLRKGVIGTDD---------------EDPAAYIQCLQVERPRRFLVVADDVWQTEVLDELRR 180
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig65996.14472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JL31_9PHAE7.860e-633.67NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig65996contigH-paniculata_contig65996:506..799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size294
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930777.5383286-CDS-H-paniculata_contig65996:505..7991622930777.5383286-CDS-H-paniculata_contig65996:505..799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65996 506..799 +
1691481447.581414-CDS-H-paniculata_contig65996:505..7991691481447.581414-CDS-H-paniculata_contig65996:505..799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65996 506..799 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig65996.14472.1prot_H-paniculata_contig65996.14472.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig65996 506..799 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig65996.14472.1

>prot_H-paniculata_contig65996.14472.1 ID=prot_H-paniculata_contig65996.14472.1|Name=mRNA_H-paniculata_contig65996.14472.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp
MLWLSVGENAVPRVSAVMSKLATMVWEQIFSKTEPNPVQRVVLGGDNYQD
CKMGDGASEHQARNGAGYVAELMRKHEKRCLVVADNVWELGVIEELKK
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mRNA from alignment at H-paniculata_contig65996:506..799+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig65996.14472.1 ID=mRNA_H-paniculata_contig65996.14472.1|Name=mRNA_H-paniculata_contig65996.14472.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=294bp|location=Sequence derived from alignment at H-paniculata_contig65996:506..799+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCTGGCTCTCGGTGGGTGAGAATGCTGTGCCACGCGTCAGCGCTGT
CATGTCCAAGCTAGCCACCATGGTATGGGAGCAGATTTTCAGCAAAACAG
AGCCTAATCCTGTTCAACGCGTCGTCCTCGGCGGTGATAATTACCAAGAC
TGCAAGATGGGGGACGGAGCATCCGAACACCAGGCAAGAAATGGAGCGGG
CTATGTCGCCGAACTTATGAGGAAGCACGAAAAGCGCTGCCTCGTTGTGG
CGGACAATGTGTGGGAATTAGGGGTTATCGAGGAATTGAAGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig65996:506..799+

>mRNA_H-paniculata_contig65996.14472.1 ID=mRNA_H-paniculata_contig65996.14472.1|Name=mRNA_H-paniculata_contig65996.14472.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig65996:506..799+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCTGGCTCTCGGTGGGTGAGAATGCTGTGCCACGCGTCAGCGCTGT
CATGTCCAAGCTAGCCACCATGGTATGGGAGCAGATTTTCAGCAAAACAG
AGCCTAATCCTGTTCAACGCGTCGTCCTCGGCGGTGATAATTACCAAGAC
TGCAAGATGGGGGACGGAGCATCCGAACACCAGGCAAGAAATGGAGCGGG
CTATGTCGCCGAACTTATGAGGAAGCACGAAAAGCGCTGCCTCGTTGTGG
CGGACAATGTGTGGGAATTAGGGGTTATCGAGGAATTGAAGAAGATGCTC
TGGCTCTCGGTGGGTGAGAATGCTGTGCCACGCGTCAGCGCTGTCATGTC
CAAGCTAGCCACCATGGTATGGGAGCAGATTTTCAGCAAAACAGAGCCTA
ATCCTGTTCAACGCGTCGTCCTCGGCGGTGATAATTACCAAGACTGCAAG
ATGGGGGACGGAGCATCCGAACACCAGGCAAGAAATGGAGCGGGCTATGT
CGCCGAACTTATGAGGAAGCACGAAAAGCGCTGCCTCGTTGTGGCGGACA
ATGTGTGGGAATTAGGGGTTATCGAGGAATTGAAGAAG
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