mRNA_H-paniculata_contig6594.14468.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6594.14468.1
Unique NamemRNA_H-paniculata_contig6594.14468.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Match: W7SYS1_9STRA (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7SYS1_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.080e-16
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 1 
Query:    4 GVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVD-ESFGGRRFAIIFVDDHSRVRKVYALRHKSEALGALKLF 237
            GVC  CER K +K+       E   E LELVHTD+ GPV+ ES GG R+AI F DD++R R VY ++HKSE+L  LK +
Sbjct:   17 GVCGTCERAKHTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRY 95
[Close]
BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Match: K8YS61_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS61_NANGC)

HSP 1 Score: 79.7 bits (195), Expect = 2.840e-16
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:    4 GVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVD-ESFGGRRFAIIFVDDHSRVRKVYALRHKSEALGALKLFEWDI 249
            GVC+ CER K +K+       E   E LELVHTD+ GPV+ ES GG R+AI F DD++R R VY ++HKS++L  LK +  D+
Sbjct:   35 GVCATCERAKHTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSDSLDCLKRYIQDM 117
[Close]
BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 4.130e-16
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    4 GVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVD-ESFGGRRFAIIFVDDHSRVRKVYALRHKSEALGALKLFEWDI 249
            GVC  CER K +K+       E   E LELVHTD+ GPV+ ES GG R+AI F DD++R R VY ++HKSE+L  LK +  D+
Sbjct:   55 GVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDM 137
[Close]
BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Match: W7TIQ5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIQ5_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 8.020e-16
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    4 GVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVD-ESFGGRRFAIIFVDDHSRVRKVYALRHKSEALGALKLFEWDI 249
            GVC  CER K +K+       E   E LELVHTD+ GPV+ ES GG R+AI F DD++R R VY ++HKSE+L  LK +  D+
Sbjct:   55 GVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDM 137
[Close]
BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 8.250e-16
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    4 GVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVD-ESFGGRRFAIIFVDDHSRVRKVYALRHKSEALGALKLFEWDI 249
            GVC  CER K +K+       E   E LELVHTD+ GPV+ ES GG R+AI F DD++R R VY ++HKSE+L  LK +  D+
Sbjct:  101 GVCGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDM 183
[Close]
BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Match: W7T9I7_9STRA (Copia-like retrotransposable element n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9I7_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.100e-15
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:    4 GVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVD-ESFGGRRFAIIFVDDHSRVRKVYALRHKSEALGALKLFEWDI 249
            G+C+ CER K +K+       E   E LELVHTD+ GPV+ ES GG R+AI F DD++R R VY ++HKSE+L  LK +  D+
Sbjct:  105 GICATCERAKHTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDM 187
[Close]
BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Match: A0A1X7SX46_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SX46_AMPQE)

HSP 1 Score: 79.3 bits (194), Expect = 2.830e-15
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 1 
Query:    1 LGVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVD-ESFGGRRFAIIFVDDHSRVRKVYALRHKSEALGALKLFEWDIAKAIGLHI 273
            L  C +C  GK+ +QP K   E H   +L+LVH+D+ GP+  +S GG+R+ + F DD SR  ++Y ++HKSEAL   + FE  +    GL I
Sbjct:  343 LSFCESCIEGKMHRQPFKSSGEIHSTRKLQLVHSDVCGPMPTDSLGGKRYFVSFTDDFSRCSQIYLMKHKSEALNKFREFEAMVKNETGLSI 434
[Close]
BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Match: A0A0S7KIZ2_9TELE (POLX (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KIZ2_9TELE)

HSP 1 Score: 75.1 bits (183), Expect = 2.230e-14
Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 1 
Query:    1 LGVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVD-ESFGGRRFAIIFVDDHSRVRKVYALRHKSEALGALKLFEWDIAKAIG 264
            L  C AC  GK+++QP K   E     +L+L+H+D+ GP+  ES GG ++ + F+DD SR  KVY ++HKSE L   K FE   +   G
Sbjct:   85 LPFCEACVDGKLTRQPCKAVGEIRSKRKLQLIHSDVCGPMQTESIGGSKYFVTFIDDFSRCCKVYFMKHKSEVLSKFKEFERTFSNECG 173
[Close]
BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Match: K8Z011_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z011_NANGC)

HSP 1 Score: 74.7 bits (182), Expect = 2.280e-14
Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 1 
Query:    4 GVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVD-ESFGGRRFAIIFVDDHSRVRKVYALRHKSEALGALKLFEWDIA 252
            GV   CER K +K+       E   E LEL+HTD+ GP++ ES GG R+AI F DD++R R VY ++HKSE+L  LK +  DI+
Sbjct:   35 GVYGTCERAKQTKRSFGTKSWERANEPLELLHTDVLGPIEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYLKDIS 118
[Close]
BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Match: W7THS2_9STRA (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7THS2_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 6.790e-14
Identity = 41/90 (45.56%), Postives = 54/90 (60.00%), Query Frame = 1 
Query:    4 GVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVD-ESFGGRRFAIIFVDDHSRVRKVYALRHKSEALGALKLFEWDIAKAIGLH 270
            GVC   ER K +K        E   + LELVHTD+ GPV+ ES GG R+AI F DD++R R +Y +RHKSE+L  LK +  D+   +  H
Sbjct:  168 GVCGPYERAKQTKVSFGTKSRERAEKPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRMIYPMRHKSESLNCLKRYIADMKVLLRDH 257
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7SYS1_9STRA1.080e-1651.90Retrovirus-related pol polyprotein from transposon... [more]
K8YS61_NANGC2.840e-1649.40Retrovirus-related pol polyprotein from transposon... [more]
W7TGQ6_9STRA4.130e-1650.60Retrotransposon unclassified n=1 Tax=Nannochlorops... [more]
W7TIQ5_9STRA8.020e-1650.60Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7T174_9STRA8.250e-1650.60Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7T9I7_9STRA1.100e-1549.40Copia-like retrotransposable element n=1 Tax=Nanno... [more]
A0A1X7SX46_AMPQE2.830e-1541.30Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
A0A0S7KIZ2_9TELE2.230e-1441.57POLX (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]
K8Z011_NANGC2.280e-1447.62Retrovirus-related pol polyprotein from transposon... [more]
W7THS2_9STRA6.790e-1445.56Retrovirus-related pol polyprotein from transposon... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6594contigH-paniculata_contig6594:11953..12228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score81.6
Seed ortholog evalue2e-13
Seed eggNOG ortholog400682.PAC_15703055
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3ACW4@33154,3BVPH@33208,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930777.1558356-CDS-H-paniculata_contig6594:11952..122281622930777.1558356-CDS-H-paniculata_contig6594:11952..12228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6594 11953..12228 -
1691481447.4309502-CDS-H-paniculata_contig6594:11952..122281691481447.4309502-CDS-H-paniculata_contig6594:11952..12228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6594 11953..12228 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6594.14468.1prot_H-paniculata_contig6594.14468.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6594 11953..12228 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6594.14468.1

>prot_H-paniculata_contig6594.14468.1 ID=prot_H-paniculata_contig6594.14468.1|Name=mRNA_H-paniculata_contig6594.14468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
LGVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVDESFGGRRFA
IIFVDDHSRVRKVYALRHKSEALGALKLFEWDIAKAIGLHI*
back to top

mRNA from alignment at H-paniculata_contig6594:11953..12228-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6594.14468.1 ID=mRNA_H-paniculata_contig6594.14468.1|Name=mRNA_H-paniculata_contig6594.14468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=276bp|location=Sequence derived from alignment at H-paniculata_contig6594:11953..12228- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGGCGTCTGTTCAGCGTGTGAGCGGGGAAAGGTATCCAAGCAACCAGT
AAAGAAGTATCGAGAGGAGCATATAATGGAGCAACTGGAGCTAGTGCATA
CTGACATCGCAGGACCGGTAGACGAATCTTTCGGGGGACGCCGTTTCGCC
ATTATCTTCGTGGACGACCACAGTCGAGTGCGTAAGGTCTATGCCCTGAG
ACACAAATCAGAGGCGTTAGGGGCTCTGAAACTTTTCGAGTGGGACATCG
CGAAGGCAATCGGGCTACACATATAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig6594:11953..12228-

>mRNA_H-paniculata_contig6594.14468.1 ID=mRNA_H-paniculata_contig6594.14468.1|Name=mRNA_H-paniculata_contig6594.14468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig6594:11953..12228- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGGCGTCTGTTCAGCGTGTGAGCGGGGAAAGGTATCCAAGCAACCAGT
AAAGAAGTATCGAGAGGAGCATATAATGGAGCAACTGGAGCTAGTGCATA
CTGACATCGCAGGACCGGTAGACGAATCTTTCGGGGGACGCCGTTTCGCC
ATTATCTTCGTGGACGACCACAGTCGAGTGCGTAAGGTCTATGCCCTGAG
ACACAAATCAGAGGCGTTAGGGGCTCTGAAACTTTTCGAGTGGGACATCG
CGAAGGCAATCGGGCTACACATATAACTCGGCGTCTGTTCAGCGTGTGAG
CGGGGAAAGGTATCCAAGCAACCAGTAAAGAAGTATCGAGAGGAGCATAT
AATGGAGCAACTGGAGCTAGTGCATACTGACATCGCAGGACCGGTAGACG
AATCTTTCGGGGGACGCCGTTTCGCCATTATCTTCGTGGACGACCACAGT
CGAGTGCGTAAGGTCTATGCCCTGAGACACAAATCAGAGGCGTTAGGGGC
TCTGAAACTTTTCGAGTGGGACATCGCGAAGGCAATCGGGCTACACATAT
AA
back to top