mRNA_H-paniculata_contig6593.14466.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6593.14466.1
Unique NamemRNA_H-paniculata_contig6593.14466.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6593.14466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6593contigH-paniculata_contig6593:3546..4454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size909
Cds size909
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930777.1089911-CDS-H-paniculata_contig6593:3545..44541622930777.1089911-CDS-H-paniculata_contig6593:3545..4454Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6593 3546..4454 +
1691481447.4111693-CDS-H-paniculata_contig6593:3545..44541691481447.4111693-CDS-H-paniculata_contig6593:3545..4454Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6593 3546..4454 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6593.14466.1prot_H-paniculata_contig6593.14466.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6593 3546..4454 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6593.14466.1

>prot_H-paniculata_contig6593.14466.1 ID=prot_H-paniculata_contig6593.14466.1|Name=mRNA_H-paniculata_contig6593.14466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=303bp
MQRGGGGGDVRGGAARGGGGAGDMQRGGDMRPGGNLNVSVNAPQGNIRGG
GGGGGGPAGDLRDNNKNNMQAVNNMRGDDVRSGMRGGDQRRGENMPGAPM
RTGGGPSPMGNGGPNMGPNAPRGNNANINGPRNNNIGSGRTGMDSGSPGM
SAGPAHRHQPHGGMGGGPGSRGAEPAGITGGGGRPFFDGPTRGGGGGGGG
GGGGGGGPGPGPGPGPGQNSIPGQGGMGSSGGPGNRVGTGPPGPQGLRAG
AAAGSGARPGPGIPSGMGVPPGVVRPGGQGMGPGPRQEPERTGMGGAAGS
NWG
back to top

mRNA from alignment at H-paniculata_contig6593:3546..4454+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6593.14466.1 ID=mRNA_H-paniculata_contig6593.14466.1|Name=mRNA_H-paniculata_contig6593.14466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=909bp|location=Sequence derived from alignment at H-paniculata_contig6593:3546..4454+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCGTGGCGGTGGCGGGGGTGATGTGCGTGGTGGTGCTGCACGTGG
CGGAGGGGGGGCTGGAGACATGCAACGCGGTGGAGACATGCGCCCGGGGG
GAAACTTGAATGTTAGTGTCAATGCTCCGCAAGGGAATATTCGAGGCGGT
GGCGGTGGCGGTGGCGGCCCGGCTGGAGATCTACGTGACAACAATAAAAA
CAACATGCAAGCAGTCAACAACATGCGTGGTGATGACGTTCGGAGCGGAA
TGCGCGGTGGCGACCAGCGGCGTGGCGAAAATATGCCGGGAGCCCCGATG
CGAACCGGCGGCGGGCCAAGCCCGATGGGTAACGGTGGACCTAACATGGG
GCCCAATGCCCCGCGCGGGAACAACGCAAACATCAACGGACCCAGGAACA
ACAACATCGGCTCAGGGAGAACTGGCATGGACAGCGGTTCTCCGGGCATG
AGCGCGGGTCCCGCTCACAGGCACCAACCCCACGGTGGCATGGGTGGCGG
CCCGGGTTCCCGCGGCGCAGAACCCGCAGGAATCACCGGCGGTGGAGGAC
GACCATTCTTTGACGGTCCAACCAGAGGCGGTGGCGGCGGCGGTGGCGGT
GGCGGTGGCGGCGGTGGTGGTCCTGGTCCTGGGCCTGGGCCTGGGCCTGG
TCAAAACAGCATACCGGGTCAGGGCGGAATGGGTAGCAGCGGTGGACCTG
GAAACAGGGTCGGCACCGGTCCTCCCGGCCCGCAAGGACTAAGGGCAGGC
GCCGCCGCGGGCAGCGGAGCGCGACCGGGACCAGGTATACCTTCCGGAAT
GGGAGTGCCACCTGGAGTCGTGCGACCCGGGGGTCAGGGAATGGGACCCG
GTCCGAGGCAGGAGCCAGAGCGCACAGGCATGGGGGGTGCTGCCGGTAGT
AACTGGGGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig6593:3546..4454+

>mRNA_H-paniculata_contig6593.14466.1 ID=mRNA_H-paniculata_contig6593.14466.1|Name=mRNA_H-paniculata_contig6593.14466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1818bp|location=Sequence derived from alignment at H-paniculata_contig6593:3546..4454+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCGTGGCGGTGGCGGGGGTGATGTGCGTGGTGGTGCTGCACGTGG
CGGAGGGGGGGCTGGAGACATGCAACGCGGTGGAGACATGCGCCCGGGGG
GAAACTTGAATGTTAGTGTCAATGCTCCGCAAGGGAATATTCGAGGCGGT
GGCGGTGGCGGTGGCGGCCCGGCTGGAGATCTACGTGACAACAATAAAAA
CAACATGCAAGCAGTCAACAACATGCGTGGTGATGACGTTCGGAGCGGAA
TGCGCGGTGGCGACCAGCGGCGTGGCGAAAATATGCCGGGAGCCCCGATG
CGAACCGGCGGCGGGCCAAGCCCGATGGGTAACGGTGGACCTAACATGGG
GCCCAATGCCCCGCGCGGGAACAACGCAAACATCAACGGACCCAGGAACA
ACAACATCGGCTCAGGGAGAACTGGCATGGACAGCGGTTCTCCGGGCATG
AGCGCGGGTCCCGCTCACAGGCACCAACCCCACGGTGGCATGGGTGGCGG
CCCGGGTTCCCGCGGCGCAGAACCCGCAGGAATCACCGGCGGTGGAGGAC
GACCATTCTTTGACGGTCCAACCAGAGGCGGTGGCGGCGGCGGTGGCGGT
GGCGGTGGCGGCGGTGGTGGTCCTGGTCCTGGGCCTGGGCCTGGGCCTGG
TCAAAACAGCATACCGGGTCAGGGCGGAATGGGTAGCAGCGGTGGACCTG
GAAACAGGGTCGGCACCGGTCCTCCCGGCCCGCAAGGACTAAGGGCAGGC
GCCGCCGCGGGCAGCGGAGCGCGACCGGGACCAGGTATACCTTCCGGAAT
GGGAGTGCCACCTGGAGTCGTGCGACCCGGGGGTCAGGGAATGGGACCCG
GTCCGAGGCAGGAGCCAGAGCGCACAGGCATGGGGGGTGCTGCCGGTAGT
AACTGGGGCATGCAGCGTGGCGGTGGCGGGGGTGATGTGCGTGGTGGTGC
TGCACGTGGCGGAGGGGGGGCTGGAGACATGCAACGCGGTGGAGACATGC
GCCCGGGGGGAAACTTGAATGTTAGTGTCAATGCTCCGCAAGGGAATATT
CGAGGCGGTGGCGGTGGCGGTGGCGGCCCGGCTGGAGATCTACGTGACAA
CAATAAAAACAACATGCAAGCAGTCAACAACATGCGTGGTGATGACGTTC
GGAGCGGAATGCGCGGTGGCGACCAGCGGCGTGGCGAAAATATGCCGGGA
GCCCCGATGCGAACCGGCGGCGGGCCAAGCCCGATGGGTAACGGTGGACC
TAACATGGGGCCCAATGCCCCGCGCGGGAACAACGCAAACATCAACGGAC
CCAGGAACAACAACATCGGCTCAGGGAGAACTGGCATGGACAGCGGTTCT
CCGGGCATGAGCGCGGGTCCCGCTCACAGGCACCAACCCCACGGTGGCAT
GGGTGGCGGCCCGGGTTCCCGCGGCGCAGAACCCGCAGGAATCACCGGCG
GTGGAGGACGACCATTCTTTGACGGTCCAACCAGAGGCGGTGGCGGCGGC
GGTGGCGGTGGCGGTGGCGGCGGTGGTGGTCCTGGTCCTGGGCCTGGGCC
TGGGCCTGGTCAAAACAGCATACCGGGTCAGGGCGGAATGGGTAGCAGCG
GTGGACCTGGAAACAGGGTCGGCACCGGTCCTCCCGGCCCGCAAGGACTA
AGGGCAGGCGCCGCCGCGGGCAGCGGAGCGCGACCGGGACCAGGTATACC
TTCCGGAATGGGAGTGCCACCTGGAGTCGTGCGACCCGGGGGTCAGGGAA
TGGGACCCGGTCCGAGGCAGGAGCCAGAGCGCACAGGCATGGGGGGTGCT
GCCGGTAGTAACTGGGGC
back to top