mRNA_H-paniculata_contig6593.14465.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6593.14465.1
Unique NamemRNA_H-paniculata_contig6593.14465.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6593.14465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6593contigH-paniculata_contig6593:2700..3541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size624
Cds size621
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930776.7421172-CDS-H-paniculata_contig6593:2699..29591622930776.7421172-CDS-H-paniculata_contig6593:2699..2959Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6593 2700..2959 +
1691481447.2854776-CDS-H-paniculata_contig6593:2699..29591691481447.2854776-CDS-H-paniculata_contig6593:2699..2959Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6593 2700..2959 +
1622930776.7585738-CDS-H-paniculata_contig6593:3178..35391622930776.7585738-CDS-H-paniculata_contig6593:3178..3539Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6593 3179..3539 +
1691481447.2963688-CDS-H-paniculata_contig6593:3178..35391691481447.2963688-CDS-H-paniculata_contig6593:3178..3539Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6593 3179..3539 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6593.14465.1prot_H-paniculata_contig6593.14465.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6593 2700..3539 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6593.14465.1

>prot_H-paniculata_contig6593.14465.1 ID=prot_H-paniculata_contig6593.14465.1|Name=mRNA_H-paniculata_contig6593.14465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=207bp
GGGNIPPGPGRPPNNNIGPRLVTNMGGPNMGAGPGSRGMGPGGQNPGRGG
MDVGNGGEDNMRNKRPKNGNEMATGGLLPGSSQGMGRPPGLNNGPMGRGV
TGVPANEPGWGGPMGPDDPRGMSPKSRMSHNMRGGPNGGGGGNNGPGIGG
PGSRSPVGPRGVASGDIGPLMGGSNRVSGAGGPGPGGPAAGGGGMAGGHN
GARPMGG
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mRNA from alignment at H-paniculata_contig6593:2700..3541+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6593.14465.1 ID=mRNA_H-paniculata_contig6593.14465.1|Name=mRNA_H-paniculata_contig6593.14465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=842bp|location=Sequence derived from alignment at H-paniculata_contig6593:2700..3541+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGGTGGCAATATACCTCCAGGCCCCGGTCGACCGCCCAATAACAACAT
AGGCCCGCGCCTTGTAACCAATATGGGCGGTCCGAACATGGGTGCGGGGC
CAGGTTCGCGGGGCATGGGACCGGGCGGACAGAACCCGGGCCGGGGGGGT
ATGGACGTCGGAAATGGAGGCGAAGACAACATGCGAAACAAGCGGCCCAA
AAACGGGAATGAAATGGCTACCGGGGGTCTGTTGCCTGGAAGCTCGCAAG
GAATGGGTCGGTGAGATGTCGTCGTTAGTCTTTTTTTGTTTTGGTTGGCT
TGTGGAGAGGTTTTCTATAGGAGGAGGTAGAGGCTGGTGATTTGGTTTCA
GGTGTATTTCGCCTTCTGTGGTGAATGTGCACTGGTTCGTTCACCTTGGC
AATAAATCAACAAGCGAGCAGAGTTTCACTCATCCCTTCCTATGCCTCTC
GCATGCACTCACTCGCATTGTTGTTGCAGACCACCCGGGCTGAACAATGG
TCCAATGGGACGGGGAGTTACAGGGGTTCCAGCAAACGAGCCAGGATGGG
GCGGACCAATGGGCCCGGATGATCCGCGTGGTATGAGCCCTAAGTCCAGA
ATGAGCCACAACATGAGAGGAGGGCCAAACGGAGGCGGGGGAGGAAACAA
CGGACCAGGCATTGGTGGACCCGGCTCGCGTAGTCCCGTAGGTCCAAGGG
GGGTGGCTAGTGGGGATATAGGTCCTTTGATGGGCGGGTCAAACCGTGTG
AGTGGCGCAGGTGGACCCGGTCCGGGCGGCCCTGCGGCAGGCGGTGGGGG
CATGGCAGGCGGGCACAACGGTGCGAGGCCAATGGGAGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig6593:2700..3541+

>mRNA_H-paniculata_contig6593.14465.1 ID=mRNA_H-paniculata_contig6593.14465.1|Name=mRNA_H-paniculata_contig6593.14465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1242bp|location=Sequence derived from alignment at H-paniculata_contig6593:2700..3541+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGGTGGCAATATACCTCCAGGCCCCGGTCGACCGCCCAATAACAACAT
AGGCCCGCGCCTTGTAACCAATATGGGCGGTCCGAACATGGGTGCGGGGC
CAGGTTCGCGGGGCATGGGACCGGGCGGACAGAACCCGGGCCGGGGGGGT
ATGGACGTCGGAAATGGAGGCGAAGACAACATGCGAAACAAGCGGCCCAA
AAACGGGAATGAAATGGCTACCGGGGGTCTGTTGCCTGGAAGCTCGCAAG
GAATGGGTCGGGCGGTGGCAATATACCTCCAGGCCCCGGTCGACCGCCCA
ATAACAACATAGGCCCGCGCCTTGTAACCAATATGGGCGGTCCGAACATG
GGTGCGGGGCCAGGTTCGCGGGGCATGGGACCGGGCGGACAGAACCCGGG
CCGGGGGGGTATGGACGTCGGAAATGGAGGCGAAGACAACATGCGAAACA
AGCGGCCCAAAAACGGGAATGAAATGGCTACCGGGGGTCTGTTGCCTGGA
AGCTCGCAAGGAATGGGTCGACCACCCGGGCTGAACAATGGTCCAATGGG
ACGGGGAGTTACAGGGGTTCCAGCAAACGAGCCAGGATGGGGCGGACCAA
TGGGCCCGGATGATCCGCGTGGTATGAGCCCTAAGTCCAGAATGAGCCAC
AACATGAGAGGAGGGCCAAACGGAGGCGGGGGAGGAAACAACGGACCAGG
CATTGGTGGACCCGGCTCGCGTAGTCCCGTAGGTCCAAGGGGGGTGGCTA
GTGGGGATATAGGTCCTTTGATGGGCGGGTCAAACCGTGTGAGTGGCGCA
GGTGGACCCGGTCCGGGCGGCCCTGCGGCAGGCGGTGGGGGCATGGCAGG
CGGGCACAACGGTGCGAGGCCAATGGGAGGGACCACCCGGGCTGAACAAT
GGTCCAATGGGACGGGGAGTTACAGGGGTTCCAGCAAACGAGCCAGGATG
GGGCGGACCAATGGGCCCGGATGATCCGCGTGGTATGAGCCCTAAGTCCA
GAATGAGCCACAACATGAGAGGAGGGCCAAACGGAGGCGGGGGAGGAAAC
AACGGACCAGGCATTGGTGGACCCGGCTCGCGTAGTCCCGTAGGTCCAAG
GGGGGTGGCTAGTGGGGATATAGGTCCTTTGATGGGCGGGTCAAACCGTG
TGAGTGGCGCAGGTGGACCCGGTCCGGGCGGCCCTGCGGCAGGCGGTGGG
GGCATGGCAGGCGGGCACAACGGTGCGAGGCCAATGGGAGGG
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