mRNA_H-paniculata_contig6589.14458.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6589.14458.1
Unique NamemRNA_H-paniculata_contig6589.14458.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6589.14458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6589contigH-paniculata_contig6589:6540..6990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size451
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930775.96499-CDS-H-paniculata_contig6589:6539..68481622930775.96499-CDS-H-paniculata_contig6589:6539..6848Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6589 6540..6848 +
1691481447.0300715-CDS-H-paniculata_contig6589:6539..68481691481447.0300715-CDS-H-paniculata_contig6589:6539..6848Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6589 6540..6848 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930775.9771008-UTR-H-paniculata_contig6589:6848..69901622930775.9771008-UTR-H-paniculata_contig6589:6848..6990Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6589 6849..6990 +
1691481447.0390444-UTR-H-paniculata_contig6589:6848..69901691481447.0390444-UTR-H-paniculata_contig6589:6848..6990Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6589 6849..6990 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6589.14458.1prot_H-paniculata_contig6589.14458.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6589 6540..6848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6589.14458.1

>prot_H-paniculata_contig6589.14458.1 ID=prot_H-paniculata_contig6589.14458.1|Name=mRNA_H-paniculata_contig6589.14458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
HRTSRGSGTRSYGSGSVPCGEDTRGTDRGGGAGCAAAIVHTPSARRATTR
SMPHRPNAATSRVFRYSIANPARGIRGSDTRLATHSQRQGEHIFIYNKAQ
PS*
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mRNA from alignment at H-paniculata_contig6589:6540..6990+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6589.14458.1 ID=mRNA_H-paniculata_contig6589.14458.1|Name=mRNA_H-paniculata_contig6589.14458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=451bp|location=Sequence derived from alignment at H-paniculata_contig6589:6540..6990+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACCGCACAAGCCGCGGCAGCGGAACAAGATCTTATGGAAGCGGAAGCGT
CCCATGCGGAGAAGACACGCGCGGCACGGATCGTGGAGGAGGAGCGGGCT
GCGCAGCGGCAATAGTACACACACCCTCAGCCCGACGTGCAACAACTCGT
AGCATGCCTCACCGCCCAAATGCAGCAACGAGCCGAGTCTTCCGCTACTC
AATTGCGAACCCAGCAAGAGGCATCCGCGGCTCAGATACACGACTTGCAA
CACATAGTCAGCGTCAAGGGGAGCACATCTTCATCTACAACAAAGCCCAA
CCCTCATGACGACGACCTCGAAAAAGGAGCCTTACCCGGCGAGAATGGTG
GAGCCGGAGCGGGGGGGATGCTGGAGCCGGATCGGGTATGATGGAACCGG
AGCAGGGGGGGATGGTGGAACCGGACTGGGCGGCAATGGAGGAGCCGGAG
C
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Coding sequence (CDS) from alignment at H-paniculata_contig6589:6540..6990+

>mRNA_H-paniculata_contig6589.14458.1 ID=mRNA_H-paniculata_contig6589.14458.1|Name=mRNA_H-paniculata_contig6589.14458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig6589:6540..6990+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACCGCACAAGCCGCGGCAGCGGAACAAGATCTTATGGAAGCGGAAGCGT
CCCATGCGGAGAAGACACGCGCGGCACGGATCGTGGAGGAGGAGCGGGCT
GCGCAGCGGCAATAGTACACACACCCTCAGCCCGACGTGCAACAACTCGT
AGCATGCCTCACCGCCCAAATGCAGCAACGAGCCGAGTCTTCCGCTACTC
AATTGCGAACCCAGCAAGAGGCATCCGCGGCTCAGATACACGACTTGCAA
CACATAGTCAGCGTCAAGGGGAGCACATCTTCATCTACAACAAAGCCCAA
CCCTCATGACACCGCACAAGCCGCGGCAGCGGAACAAGATCTTATGGAAG
CGGAAGCGTCCCATGCGGAGAAGACACGCGCGGCACGGATCGTGGAGGAG
GAGCGGGCTGCGCAGCGGCAATAGTACACACACCCTCAGCCCGACGTGCA
ACAACTCGTAGCATGCCTCACCGCCCAAATGCAGCAACGAGCCGAGTCTT
CCGCTACTCAATTGCGAACCCAGCAAGAGGCATCCGCGGCTCAGATACAC
GACTTGCAACACATAGTCAGCGTCAAGGGGAGCACATCTTCATCTACAAC
AAAGCCCAACCCTCATGA
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