mRNA_H-paniculata_contig65880.14457.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig65880.14457.1
Unique NamemRNA_H-paniculata_contig65880.14457.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig65880.14457.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 2.280e-17
Identity = 54/130 (41.54%), Postives = 67/130 (51.54%), Query Frame = 1 
Query:    1 SLEMCMMCRNFSTLHVRVAIDTPRRLWATSADQPSHSTSGRARQCRLRVSRVPLLRARAVTWTRSASAEFMSMDSYLLANVEYVKFGIRFNRSLEGVVWPPRVRRILFDGNIGRCTSMFNQPIDEVVWPS 390
            SLE CM CR + TLH+ V +  PR L A +   P H         RL   RVP LRAR VTW    +AE  S   + L +++++ FG  F  SLE V WP R+  I F        S FN PID V WP+
Sbjct:   64 SLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPPQHPK-------RLSRRRVPRLRARHVTWNMPTAAELRS-PIFALMDLDHLDFGSAFEGSLEAVTWPRRLESIAFHN-----FSPFNTPIDLVKWPA 180
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BLAST of mRNA_H-paniculata_contig65880.14457.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 4.130e-17
Identity = 54/130 (41.54%), Postives = 75/130 (57.69%), Query Frame = 1 
Query:    1 SLEMCMMCRNFSTLHVRVAIDTPRRLWATSADQPSHSTSGRARQCRLRVSRVPLLRARAVTWTRSASAEFMSMDSYLLANVEYVKFGIRFNRSLEGVVWPPRVRRILFDGNIGRCTSMFNQPIDEVVWPS 390
            SLE+CM CR++ TLH+ V   TPRRL A +AD PS          RL  +RVP LRAR  TW    +A  M    +   +V+Y++FG  F+ SL+ +VWP R++ I F     R +S  N+ +D V WP+
Sbjct:  164 SLELCMACRHYQTLHLTVDAHTPRRLLA-AADAPSPHPK------RLCGTRVPRLRARRATWN-VPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTIEF-----RQSSPLNRLLDGVSWPA 280
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BLAST of mRNA_H-paniculata_contig65880.14457.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 6.300e-9
Identity = 48/131 (36.64%), Postives = 65/131 (49.62%), Query Frame = 1 
Query:    1 SLEMCMMCRNFSTLHVRVAIDTPRRLWATSADQPSHSTSGRARQCRLRVSRVPLLRARAVTWTRSASAEFMSMDSYLLANVEYVKFGIRFNRSLEGV-VWPPRVRRILFDGNIGRCTSMFNQPIDEVVWPS 390
            SLE C+ CRN+ TLH++V    PRRL A +   P H        CR   +RVP LRAR VTW    +AE +S+  + + +V+ +KFG     SLE + +W  R      DG      S  +      VW S
Sbjct:  141 SLEFCVACRNYQTLHLKVDAQIPRRLLARADAPPPHPEL----LCR---TRVPRLRARRVTWGMRKAAE-LSIPIFAMTDVDCLKFG---ETSLEALRLWHGR------DGWKRSSFSFLHYSTSRSVWSS 254
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig65880.14457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JZZ4_9PHAE2.280e-1741.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPY7_9PHAE4.130e-1741.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2S9_ECTSI6.300e-936.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig65880contigH-paniculata_contig65880:411..800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size392
Cds size381
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930775.9093702-UTR-H-paniculata_contig65880:410..4191622930775.9093702-UTR-H-paniculata_contig65880:410..419Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig65880 411..419 +
1691481447.0072124-UTR-H-paniculata_contig65880:410..4191691481447.0072124-UTR-H-paniculata_contig65880:410..419Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig65880 411..419 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930775.9217017-CDS-H-paniculata_contig65880:419..8001622930775.9217017-CDS-H-paniculata_contig65880:419..800Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65880 420..800 +
1691481447.0182827-CDS-H-paniculata_contig65880:419..8001691481447.0182827-CDS-H-paniculata_contig65880:419..800Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65880 420..800 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig65880.14457.1prot_H-paniculata_contig65880.14457.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig65880 420..800 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig65880.14457.1

>prot_H-paniculata_contig65880.14457.1 ID=prot_H-paniculata_contig65880.14457.1|Name=mRNA_H-paniculata_contig65880.14457.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
MCMMCRNFSTLHVRVAIDTPRRLWATSADQPSHSTSGRARQCRLRVSRVP
LLRARAVTWTRSASAEFMSMDSYLLANVEYVKFGIRFNRSLEGVVWPPRV
RRILFDGNIGRCTSMFNQPIDEVVWPS
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mRNA from alignment at H-paniculata_contig65880:411..800+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig65880.14457.1 ID=mRNA_H-paniculata_contig65880.14457.1|Name=mRNA_H-paniculata_contig65880.14457.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=390bp|location=Sequence derived from alignment at H-paniculata_contig65880:411..800+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGCTGGAGATGTGTATGATGTGCCGCAACTTCAGTACGCTACACGTGAG
GGTGGCGATAGACACACCGCGACGACTGTGGGCGACTTCTGCCGATCAGC
CATCGCATTCGACGAGCGGCAGAGCGCGGCAGTGCCGTTTGCGTGTGAGC
CGCGTGCCGCTGTTGCGGGCACGTGCGGTGACATGGACAAGGTCAGCTAG
CGCCGAGTTTATGTCTATGGACAGCTATCTCTTGGCGAATGTGGAATACG
TGAAATTCGGGATCAGATTCAACCGCAGTCTGGAGGGCGTAGTATGGCCC
CCGAGGGTTCGGCGTATCTTGTTTGACGGAAACATTGGGCGCTGCACCTC
CATGTTCAACCAGCCGATTGATGAGGTAGTGTGGCCTTCT
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Coding sequence (CDS) from alignment at H-paniculata_contig65880:411..800+

>mRNA_H-paniculata_contig65880.14457.1 ID=mRNA_H-paniculata_contig65880.14457.1|Name=mRNA_H-paniculata_contig65880.14457.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig65880:411..800+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTATGATGTGCCGCAACTTCAGTACGCTACACGTGAGGGTGGCGAT
AGACACACCGCGACGACTGTGGGCGACTTCTGCCGATCAGCCATCGCATT
CGACGAGCGGCAGAGCGCGGCAGTGCCGTTTGCGTGTGAGCCGCGTGCCG
CTGTTGCGGGCACGTGCGGTGACATGGACAAGGTCAGCTAGCGCCGAGTT
TATGTCTATGGACAGCTATCTCTTGGCGAATGTGGAATACGTGAAATTCG
GGATCAGATTCAACCGCAGTCTGGAGGGCGTAGTATGGCCCCCGAGGGTT
CGGCGTATCTTGTTTGACGGAAACATTGGGCGCTGCACCTCCATGTTCAA
CCAGCCGATTGATGAGGTAGTGTGGCCTTCTATGTGTATGATGTGCCGCA
ACTTCAGTACGCTACACGTGAGGGTGGCGATAGACACACCGCGACGACTG
TGGGCGACTTCTGCCGATCAGCCATCGCATTCGACGAGCGGCAGAGCGCG
GCAGTGCCGTTTGCGTGTGAGCCGCGTGCCGCTGTTGCGGGCACGTGCGG
TGACATGGACAAGGTCAGCTAGCGCCGAGTTTATGTCTATGGACAGCTAT
CTCTTGGCGAATGTGGAATACGTGAAATTCGGGATCAGATTCAACCGCAG
TCTGGAGGGCGTAGTATGGCCCCCGAGGGTTCGGCGTATCTTGTTTGACG
GAAACATTGGGCGCTGCACCTCCATGTTCAACCAGCCGATTGATGAGGTA
GTGTGGCCTTCT
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