mRNA_H-paniculata_contig6587.14456.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6587.14456.1
Unique NamemRNA_H-paniculata_contig6587.14456.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6587.14456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6587contigH-paniculata_contig6587:3005..5977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size977
Cds size975
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6587.14456.1prot_H-paniculata_contig6587.14456.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6587 3007..5977 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930775.820419-UTR-H-paniculata_contig6587:3004..30061622930775.820419-UTR-H-paniculata_contig6587:3004..3006Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6587 3005..3006 +
1691481446.963922-UTR-H-paniculata_contig6587:3004..30061691481446.963922-UTR-H-paniculata_contig6587:3004..3006Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6587 3005..3006 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930775.8385823-CDS-H-paniculata_contig6587:3006..31321622930775.8385823-CDS-H-paniculata_contig6587:3006..3132Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6587 3007..3132 +
1691481446.975921-CDS-H-paniculata_contig6587:3006..31321691481446.975921-CDS-H-paniculata_contig6587:3006..3132Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6587 3007..3132 +
1622930775.8568127-CDS-H-paniculata_contig6587:4543..50371622930775.8568127-CDS-H-paniculata_contig6587:4543..5037Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6587 4544..5037 +
1691481446.9861913-CDS-H-paniculata_contig6587:4543..50371691481446.9861913-CDS-H-paniculata_contig6587:4543..5037Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6587 4544..5037 +
1622930775.873756-CDS-H-paniculata_contig6587:5622..59771622930775.873756-CDS-H-paniculata_contig6587:5622..5977Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6587 5623..5977 +
1691481446.9961696-CDS-H-paniculata_contig6587:5622..59771691481446.9961696-CDS-H-paniculata_contig6587:5622..5977Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6587 5623..5977 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6587.14456.1

>prot_H-paniculata_contig6587.14456.1 ID=prot_H-paniculata_contig6587.14456.1|Name=mRNA_H-paniculata_contig6587.14456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=325bp
MARRRAAPICLLSVALIASCRYKGHLLANGAYASTSLRWYSVAASSSATS
NAGDSTSSSVANAKTAADTPTMKRRLQVEKLTNSTNAPSAAPNTPPPTPN
LVPTLSPVDITETNTPSAGPNTNSPVTVALGETEEPTPFLQTRAPVDLNT
PTPSGVGGVTPSPSVQLVTAPVVPVVGTDDDAVDDDADDDATDDGATDDD
AEADDDTPLPTPAPTKLTAEPSVAATTIFPMTEAPFPAIEVPVTPEPTAV
GLAGQLAGSIRAPTAALNVTAVSKLRNVLEDVLEMEDQDEITVKIKATAS
RRLQSSFSLGSDAGGGGEDEGLMGR
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mRNA from alignment at H-paniculata_contig6587:3005..5977+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6587.14456.1 ID=mRNA_H-paniculata_contig6587.14456.1|Name=mRNA_H-paniculata_contig6587.14456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2973bp|location=Sequence derived from alignment at H-paniculata_contig6587:3005..5977+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATGGCTCGTAGGCGGGCAGCGCCCATATGCCTTCTTTCAGTTGCTCTA
ATCGCATCGTGCAGATATAAAGGCCATTTGTTGGCGAACGGAGCCTACGC
CTCGACGAGCTTGCGGTGGTACTCTGTGGTGAGTCAGGAATGTAAGCTAC
CATAGTTTATAGCTTTGTTTTTTACTTTCCCGGTCGCGGCTTAGTTCTCC
ATCCGAGTCGTGTGATGTCTCCTTTCTTGCCTTGAACTGTTACCTGGTGG
TGGGGGGGTAGTGATCTCACTTGCTCGTGAACGTTGGAGTTGACGGCAGT
AGTCTGATGAGTTTTCTTGTCTGTTCTGGAGGCATATTTTCTTGTCTGTT
CCGGACGCATATTCGCCGCGTACCGCTGAGTTGTTCACCCCGTGAAGCCT
GAAACGTAATGATCACAAACGCTAAGAATTGAACCCTCAAGTTACTGATT
GGATGGGTTTTGTTGACTCCCCGCTGATACACACACCACCCGCGATGGAG
GTATTTTTGTACCTCAAATGTCTTTGAAACCACAATGATTGATTTTGCTC
GACCTCTCGCGCAAGACACTTGTGAGATAGATGGTTGAAATTTTTTATTG
ATGTACATTTGATTCGTGTTGAGCTATAGGATAGCTCCTGCAGGGGAAAT
TATTCTTGTACTCAACAGATATTGGACAGATCAGATGGCGAGTATAACGG
TAGTGCGGGTGGCTCTAACGTACACAAGCATTCACTACGTACATCTCACT
TGCTATATTGCCAACATCAGGGGCAAGGAGAGTACTACAACCTTGTGTCA
TTTTTTCATGTCTATAGACAGGCCTGTATTCCTCAAGCCGGACGGAACTT
TTGACCCCATCAGCTGCTACGAAAACGCTGGTGTTTGTCTATTTTAGCCT
ACATTAAATCCAAGATTGAAGCTCCAAACCCGCAAAGAATGGACTCTCTT
TTGCGCCTGAGATAGTGCTAACCTTCTCCAGCTGATCAAGGCAATATATC
GACTTATGTTTCATTTTCACGGCTGGTCGTCAGCAAATATTCCTTTTAGC
CATTACGCAAGTCCGGTTTTTACAGGGTTAATTTTTTGTTTTACCGAGAA
TTACAGTCACCAATTTGAAGATATTTGTGTTGACTTGCGTGCGTGTATGT
ATAGCTTTTACCCTTTCGAGAGCCTAATTCCGTAATCGTCCAAATGTAGA
TTTGCTAAGGACTAGTCGTGAATAATGGCTAATGACCTATCCAGCTCCAA
TCAACCGGTTAGTGCATCTCAGGTGCAACAGGTGATCGCTTCTTGCCCTT
ACTGGGCGCTTCATCTTGGCTTGAGTTTAGAGAGAGAACGGGTAAACATC
GCATTACTTCGTAACGACCAATTAATAAACGAACGTTGCATAGTTTGTTG
GGTTAGATCTTTTTTACTAGTCCAACTCGGCCTCTTCTACCACTTGTTTC
CTAAACTCGGTCCTTCAATAACCCATTGCTTCCTATATCTCCCTATCTCT
CTTGATCTTCTCCTCTTTTTTATTTTCTGGCAAAAACAGGCTGCTAGCAG
TAGCGCCACGAGCAACGCCGGCGACTCCACCAGCAGTAGCGTGGCAAATG
CAAAAACCGCCGCAGACACGCCCACAATGAAACGCCGACTGCAAGTGGAG
AAGCTAACAAACTCGACCAACGCGCCGTCGGCCGCCCCGAACACCCCGCC
CCCAACACCCAACTTGGTCCCCACCCTTTCGCCTGTTGACATTACCGAGA
CTAACACACCGTCCGCGGGGCCGAATACGAACTCTCCAGTGACAGTAGCA
TTGGGAGAGACGGAAGAGCCGACCCCGTTTCTGCAGACACGAGCTCCTGT
AGATCTTAATACGCCCACGCCCAGCGGTGTCGGAGGGGTTACGCCTTCGC
CTTCTGTGCAGCTCGTGACTGCCCCGGTTGTCCCCGTGGTTGGTACTGAC
GATGATGCTGTCGATGACGATGCTGATGATGATGCTACTGATGATGGTGC
TACTGATGATGATGCTGAAGCTGACGATGATACGTGAGTAGGTTCGGTAG
GAGACGGTTTGATGTGGAGGCGGCCCGGGGAATGGACGTTATGCAGCTGA
GTTCAAACTCCAGATTTTTACACTTGCCAGCAATATTATATCTTCTACTG
GTGGACGCGACTGTCGGTGACCGTTTTGACACGTTTTTGGATTTCTGTGG
CCACGTTTTGTTGTGTGCACTCTTCTTAATACACGCACGTGCATTTCAAA
GGTCAAAGGTTAGTAGCTTGTAATCAATATGGCTAGATATCCTCTTGAGC
AAGACTGACACAGCTGAGGTATGAGGTATATATAATACTGTATACCGCAT
ATGTAACGTGAGCCACACCATACCACACCACGCCACTCATACTCGGGGAA
TCAACACATGAAATTGGACTACAGTCAGTATGTGGGCCCATTTCACCTCC
TTTTCGTTTCGTATACCCATGCCCCTTTACCCCTCCGGGATCTAATTTTA
CTGATACGTGTAACCCCCCCCCCACCCACCCACTCCCTTCGCCGCCGATT
CCTCCCGATGACCCGATACACCCACATCCCTTACTTGATCAAAATACTGA
TGGTTATTTGAACAAAAGGCCATTACCCACCCCAGCGCCGACTAAGCTCA
CCGCGGAACCGAGTGTAGCGGCGACAACAATATTTCCCATGACGGAGGCC
CCGTTCCCGGCCATAGAGGTGCCGGTGACGCCGGAGCCAACGGCCGTCGG
CCTCGCGGGGCAGCTGGCTGGGAGCATTCGCGCGCCGACGGCCGCGCTGA
ACGTAACCGCGGTGTCAAAGCTGCGGAACGTTCTCGAAGATGTTCTGGAA
ATGGAAGATCAGGACGAGATCACGGTGAAGATCAAAGCGACGGCTAGCCG
CCGGTTGCAGAGTTCGTTTTCGCTGGGTAGTGATGCTGGTGGTGGAGGTG
AGGATGAAGGCTTGATGGGGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig6587:3005..5977+

>mRNA_H-paniculata_contig6587.14456.1 ID=mRNA_H-paniculata_contig6587.14456.1|Name=mRNA_H-paniculata_contig6587.14456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1950bp|location=Sequence derived from alignment at H-paniculata_contig6587:3005..5977+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTCGTAGGCGGGCAGCGCCCATATGCCTTCTTTCAGTTGCTCTAAT
CGCATCGTGCAGATATAAAGGCCATTTGTTGGCGAACGGAGCCTACGCCT
CGACGAGCTTGCGGTGGTACTCTGTGATGGCTCGTAGGCGGGCAGCGCCC
ATATGCCTTCTTTCAGTTGCTCTAATCGCATCGTGCAGATATAAAGGCCA
TTTGTTGGCGAACGGAGCCTACGCCTCGACGAGCTTGCGGTGGTACTCTG
TGGCTGCTAGCAGTAGCGCCACGAGCAACGCCGGCGACTCCACCAGCAGT
AGCGTGGCAAATGCAAAAACCGCCGCAGACACGCCCACAATGAAACGCCG
ACTGCAAGTGGAGAAGCTAACAAACTCGACCAACGCGCCGTCGGCCGCCC
CGAACACCCCGCCCCCAACACCCAACTTGGTCCCCACCCTTTCGCCTGTT
GACATTACCGAGACTAACACACCGTCCGCGGGGCCGAATACGAACTCTCC
AGTGACAGTAGCATTGGGAGAGACGGAAGAGCCGACCCCGTTTCTGCAGA
CACGAGCTCCTGTAGATCTTAATACGCCCACGCCCAGCGGTGTCGGAGGG
GTTACGCCTTCGCCTTCTGTGCAGCTCGTGACTGCCCCGGTTGTCCCCGT
GGTTGGTACTGACGATGATGCTGTCGATGACGATGCTGATGATGATGCTA
CTGATGATGGTGCTACTGATGATGATGCTGAAGCTGACGATGATACGCTG
CTAGCAGTAGCGCCACGAGCAACGCCGGCGACTCCACCAGCAGTAGCGTG
GCAAATGCAAAAACCGCCGCAGACACGCCCACAATGAAACGCCGACTGCA
AGTGGAGAAGCTAACAAACTCGACCAACGCGCCGTCGGCCGCCCCGAACA
CCCCGCCCCCAACACCCAACTTGGTCCCCACCCTTTCGCCTGTTGACATT
ACCGAGACTAACACACCGTCCGCGGGGCCGAATACGAACTCTCCAGTGAC
AGTAGCATTGGGAGAGACGGAAGAGCCGACCCCGTTTCTGCAGACACGAG
CTCCTGTAGATCTTAATACGCCCACGCCCAGCGGTGTCGGAGGGGTTACG
CCTTCGCCTTCTGTGCAGCTCGTGACTGCCCCGGTTGTCCCCGTGGTTGG
TACTGACGATGATGCTGTCGATGACGATGCTGATGATGATGCTACTGATG
ATGGTGCTACTGATGATGATGCTGAAGCTGACGATGATACGCCATTACCC
ACCCCAGCGCCGACTAAGCTCACCGCGGAACCGAGTGTAGCGGCGACAAC
AATATTTCCCATGACGGAGGCCCCGTTCCCGGCCATAGAGGTGCCGGTGA
CGCCGGAGCCAACGGCCGTCGGCCTCGCGGGGCAGCTGGCTGGGAGCATT
CGCGCGCCGACGGCCGCGCTGAACGTAACCGCGGTGTCAAAGCTGCGGAA
CGTTCTCGAAGATGTTCTGGAAATGGAAGATCAGGACGAGATCACGGTGA
AGATCAAAGCGACGGCTAGCCGCCGGTTGCAGAGTTCGTTTTCGCTGGGT
AGTGATGCTGGTGGTGGAGGTGAGGATGAAGGCTTGATGGGGAGGGCCAT
TACCCACCCCAGCGCCGACTAAGCTCACCGCGGAACCGAGTGTAGCGGCG
ACAACAATATTTCCCATGACGGAGGCCCCGTTCCCGGCCATAGAGGTGCC
GGTGACGCCGGAGCCAACGGCCGTCGGCCTCGCGGGGCAGCTGGCTGGGA
GCATTCGCGCGCCGACGGCCGCGCTGAACGTAACCGCGGTGTCAAAGCTG
CGGAACGTTCTCGAAGATGTTCTGGAAATGGAAGATCAGGACGAGATCAC
GGTGAAGATCAAAGCGACGGCTAGCCGCCGGTTGCAGAGTTCGTTTTCGC
TGGGTAGTGATGCTGGTGGTGGAGGTGAGGATGAAGGCTTGATGGGGAGG
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